Pcsk6 (proprotein convertase subtilisin/kexin type 6) - Rat Genome Database

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Gene: Pcsk6 (proprotein convertase subtilisin/kexin type 6) Mus musculus
Analyze
Symbol: Pcsk6
Name: proprotein convertase subtilisin/kexin type 6
RGD ID: 1553015
MGI Page MGI
Description: Predicted to enable heparin binding activity; nerve growth factor binding activity; and serine-type endopeptidase activity. Acts upstream of or within determination of left/right symmetry; protein processing; and zygotic determination of anterior/posterior axis, embryo. Predicted to be active in several cellular components, including cell surface; collagen-containing extracellular matrix; and extracellular space. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; limb; and skeleton. Orthologous to human PCSK6 (proprotein convertase subtilisin/kexin type 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: b2b2830C; b2b2830Clo; C86343; PAC; Pace4; paired basic amino acid cleaving system 4; proprotein convertase subtilisin/kexin type 6 isoform 1; SP; SPC4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39765,511,884 - 65,700,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl765,511,482 - 65,700,134 (+)EnsemblGRCm39 Ensembl
GRCm38765,862,136 - 66,050,386 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl765,861,734 - 66,050,386 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,007,022 - 73,195,272 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36765,740,684 - 65,929,336 (+)NCBIMGSCv36mm8
Celera763,292,677 - 63,485,752 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
alachlor  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
butanal  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDT  (ISO)
diethylstilbestrol  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
flutamide  (ISO)
folic acid  (EXP)
inulin  (EXP)
L-ethionine  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
omeprazole  (ISO)
p-toluidine  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenethyl caffeate  (ISO)
phenobarbital  (ISO)
phenylephrine  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (ISO)
propanal  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (EXP)
tamoxifen  (EXP)
testosterone  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal direction of heart looping  (IAGP)
abnormal embryonic tissue morphology  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal extraembryonic ectoderm morphology  (IAGP)
abnormal female reproductive system physiology  (IAGP)
abnormal left-right axis patterning  (IAGP)
abnormal nervous system morphology  (IAGP)
abnormal optic disk morphology  (IEA)
abnormal ovary morphology  (IAGP)
abnormal primitive streak elongation  (IAGP)
abnormal primitive streak formation  (IAGP)
abnormal rostral-caudal axis patterning  (IAGP)
absent allantois  (IAGP)
absent amnion  (IAGP)
absent chorion  (IAGP)
absent embryonic telencephalon  (IAGP)
absent nasal capsule  (IAGP)
absent ovarian follicles  (IAGP)
agnathia  (IAGP)
anophthalmia  (IAGP)
cataract  (IEA)
common atrium  (IAGP)
common ventricle  (IAGP)
corneal opacity  (IEA)
cyclopia  (IAGP)
decreased embryo size  (IAGP)
decreased tumor latency  (IAGP)
dextrocardia  (IAGP)
disorganized extraembryonic tissue  (IAGP)
double outlet right ventricle  (IAGP)
early reproductive senescence  (IAGP)
embryonic lethality between implantation and placentation, complete penetrance  (IAGP)
fused first pharyngeal arch  (IAGP)
increased ovary tumor incidence  (IAGP)
increased reproductive system tumor incidence  (IAGP)
irregularly shaped pupil  (IEA)
left pulmonary isomerism  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
ovary cyst  (IAGP)
persistent truncus arteriosus  (IAGP)
small embryonic epiblast  (IAGP)
truncated foregut  (IAGP)
ventricular septal defect  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. PACE4: a subtilisin-like endoprotease prevalent in the anterior pituitary and regulated by thyroid status. Johnson RC, etal., Endocrinology 1994 Sep;135(3):1178-85.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1429684   PMID:7782070   PMID:7819324   PMID:8335106   PMID:8468318   PMID:8698813   PMID:9291583   PMID:9393739   PMID:9885250   PMID:10349636   PMID:10809672   PMID:10922068  
PMID:11007541   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11960907   PMID:12447384   PMID:12477932   PMID:12533406   PMID:14504233   PMID:14610273   PMID:15505202   PMID:15829518  
PMID:16103082   PMID:16135528   PMID:16141072   PMID:16141073   PMID:16163737   PMID:16280085   PMID:16481355   PMID:16728477   PMID:16829211   PMID:16829522   PMID:16950123   PMID:17914070  
PMID:17967808   PMID:18171685   PMID:18287559   PMID:18664504   PMID:18781635   PMID:18799693   PMID:19520771   PMID:19884258   PMID:20573697   PMID:20651981   PMID:20708584   PMID:20876279  
PMID:21183657   PMID:21267068   PMID:21491433   PMID:21873635   PMID:21896659   PMID:22440827   PMID:22925071   PMID:22987638   PMID:22988430   PMID:23233679   PMID:23441131   PMID:23552073  
PMID:23918928   PMID:24557631   PMID:24845697   PMID:24859004   PMID:25588837   PMID:25807483   PMID:26259032   PMID:26416966   PMID:26611327   PMID:26744331   PMID:27542691   PMID:28839193  
PMID:29659809   PMID:30728831   PMID:32325687   PMID:34321999   PMID:36362216   PMID:37211384   PMID:37463144  


Genomics

Comparative Map Data
Pcsk6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39765,511,884 - 65,700,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl765,511,482 - 65,700,134 (+)EnsemblGRCm39 Ensembl
GRCm38765,862,136 - 66,050,386 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl765,861,734 - 66,050,386 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,007,022 - 73,195,272 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36765,740,684 - 65,929,336 (+)NCBIMGSCv36mm8
Celera763,292,677 - 63,485,752 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map735.36NCBI
PCSK6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815101,303,933 - 101,489,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15101,289,784 - 101,525,202 (-)EnsemblGRCh38hg38GRCh38
GRCh3715101,844,138 - 102,029,910 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361599,661,656 - 99,847,710 (-)NCBINCBI36Build 36hg18NCBI36
Celera1578,256,961 - 78,396,788 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,966,553 - 78,106,326 (-)NCBIHuRef
CHM1_115101,685,119 - 101,871,305 (-)NCBICHM1_1
T2T-CHM13v2.01599,058,998 - 99,244,970 (-)NCBIT2T-CHM13v2.0
Pcsk6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81128,839,742 - 129,038,087 (+)NCBIGRCr8
mRatBN7.21119,428,978 - 119,627,626 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1119,429,265 - 119,627,596 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1127,422,899 - 127,620,747 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,594,338 - 134,792,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01127,403,150 - 127,601,477 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01126,749,508 - 126,947,392 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1126,749,508 - 126,947,392 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01127,884,080 - 128,033,742 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,324,843 - 120,476,913 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11120,403,185 - 120,555,256 (+)NCBI
Celera1111,644,666 - 111,839,248 (+)NCBICelera
Cytogenetic Map1q22NCBI
Pcsk6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541628,184,768 - 28,314,759 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541628,184,768 - 28,314,697 (-)NCBIChiLan1.0ChiLan1.0
PCSK6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21690,890,545 - 91,092,337 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11594,591,746 - 94,792,956 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01580,029,225 - 80,226,027 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11599,312,512 - 99,456,295 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1599,312,512 - 99,460,444 (-)Ensemblpanpan1.1panPan2
PCSK6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1339,582,804 - 39,768,838 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl339,582,819 - 39,767,929 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha342,273,277 - 42,458,425 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0339,974,680 - 40,160,403 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl339,974,274 - 40,160,332 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1339,508,310 - 39,693,874 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0339,735,714 - 39,930,680 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0339,946,780 - 40,132,048 (+)NCBIUU_Cfam_GSD_1.0
Pcsk6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640143,773,158 - 143,960,126 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364832,374,357 - 2,561,384 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364832,374,357 - 2,561,322 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCSK6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,508,534 - 145,695,666 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,508,658 - 145,697,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21311,243,196 - 311,347,239 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PCSK6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,758,198 - 19,949,875 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,754,625 - 19,949,382 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605926,590,273 - 26,782,701 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcsk6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247683,331,207 - 3,516,394 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247683,336,374 - 3,517,697 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcsk6
7228 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1883
Count of miRNA genes:543
Interacting mature miRNAs:642
Transcripts:ENSMUST00000055576, ENSMUST00000098391, ENSMUST00000176199, ENSMUST00000176209, ENSMUST00000177272, ENSMUST00000177369
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
13432171Rosd1_mrotarod saline difference 1 (mouse)75919437869004862Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
13506761Tbthq1_mtrabecular bone thickness QTL 1 (mouse)76234974867749748Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
13506750Tbthq2_mtrabecular bone thickness QTL 2 (mouse)76565974877549748Mouse

Markers in Region
D50060  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38766,049,067 - 66,049,247UniSTSGRCm38
MGSCv37773,193,953 - 73,194,133UniSTSGRCm37
Celera763,484,433 - 63,484,613UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
Whitehead_YAC7 UniSTS
D7Mit199  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38765,934,072 - 65,934,201UniSTSGRCm38
MGSCv37773,078,958 - 73,079,087UniSTSGRCm37
Celera763,365,434 - 63,365,563UniSTS
Cytogenetic Map7CUniSTS
cM Map727.8UniSTS
Whitehead Genetic726.2UniSTS
Whitehead_YAC7 UniSTS
UniSTS:235680  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38765,971,438 - 65,971,554UniSTSGRCm38
MGSCv37773,116,324 - 73,116,440UniSTSGRCm37
Celera763,405,302 - 63,405,418UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
UniSTS:235683  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38766,049,682 - 66,049,849UniSTSGRCm38
MGSCv37773,194,568 - 73,194,735UniSTSGRCm37
Celera763,485,048 - 63,485,215UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
C86343  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38766,050,146 - 66,050,236UniSTSGRCm38
MGSCv37773,195,032 - 73,195,122UniSTSGRCm37
Celera763,485,512 - 63,485,602UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
Whitehead/MRC_RH7861.56UniSTS
Pcsk6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37773,194,792 - 73,195,152UniSTSGRCm37
MGSCv37773,194,774 - 73,194,843UniSTSGRCm37
Celera763,485,272 - 63,485,632UniSTS
Celera763,485,254 - 63,485,323UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS
cM Map728.5UniSTS
Pcsk6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38766,049,888 - 66,049,957UniSTSGRCm38
MGSCv37773,194,774 - 73,194,843UniSTSGRCm37
Celera763,485,254 - 63,485,323UniSTS
Cytogenetic Map7CUniSTS
Pcsk6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38766,049,906 - 66,050,266UniSTSGRCm38
MGSCv37773,194,792 - 73,195,152UniSTSGRCm37
Celera763,485,272 - 63,485,632UniSTS
Cytogenetic Map7CUniSTS
cM Map728.5UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000055576   ⟹   ENSMUSP00000053742
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,511,777 - 65,700,134 (+)Ensembl
GRCm38.p6 Ensembl765,862,029 - 66,050,386 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098391   ⟹   ENSMUSP00000095992
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,511,884 - 65,700,082 (+)Ensembl
GRCm38.p6 Ensembl765,862,136 - 66,050,334 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176199   ⟹   ENSMUSP00000135851
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,511,482 - 65,602,732 (+)Ensembl
GRCm38.p6 Ensembl765,861,734 - 65,952,984 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176209   ⟹   ENSMUSP00000135033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,512,180 - 65,700,088 (+)Ensembl
GRCm38.p6 Ensembl765,862,432 - 66,050,340 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,688,166 - 65,693,276 (+)Ensembl
GRCm38.p6 Ensembl766,038,418 - 66,043,528 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl765,602,760 - 65,612,941 (+)Ensembl
GRCm38.p6 Ensembl765,953,012 - 65,963,193 (+)Ensembl
RefSeq Acc Id: NM_001291184   ⟹   NP_001278113
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,511,884 - 65,700,134 (+)NCBI
GRCm38765,862,136 - 66,050,386 (+)NCBI
Celera763,292,677 - 63,485,752 (+)NCBI
Sequence:
RefSeq Acc Id: NM_011048   ⟹   NP_035178
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39765,511,884 - 65,700,134 (+)NCBI
GRCm38765,862,136 - 66,050,386 (+)ENTREZGENE
MGSCv37773,007,022 - 73,195,272 (+)RGD
Celera763,292,677 - 63,485,752 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035178   ⟸   NM_011048
- Peptide Label: isoform 1 precursor
- UniProtKB: F6XJP7 (UniProtKB/TrEMBL),   Q62030 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001278113   ⟸   NM_001291184
- Peptide Label: isoform 2 precursor
- UniProtKB: E9Q4D0 (UniProtKB/TrEMBL),   Q62030 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000053742   ⟸   ENSMUST00000055576
RefSeq Acc Id: ENSMUSP00000095992   ⟸   ENSMUST00000098391
RefSeq Acc Id: ENSMUSP00000135851   ⟸   ENSMUST00000176199
RefSeq Acc Id: ENSMUSP00000135033   ⟸   ENSMUST00000176209
Protein Domains
P/Homo B   Peptidase S8/S53   PLAC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F6XJP7-F1-model_v2 AlphaFold F6XJP7 1-959 view protein structure

Promoters
RGD ID:8664373
Promoter ID:EPDNEW_M10217
Type:single initiation site
Name:Pcsk6_1
Description:Mus musculus proprotein convertase subtilisin/kexin type 6 ,transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38765,862,134 - 65,862,194EPDNEW
RGD ID:6841715
Promoter ID:MM_KWN:50943
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Liver
Transcripts:NM_011048,   UC009HGW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36773,006,446 - 73,006,946 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102897 AgrOrtholog
Ensembl Genes ENSMUSG00000030513 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055576 ENTREZGENE
  ENSMUST00000055576.12 UniProtKB/TrEMBL
  ENSMUST00000098391 ENTREZGENE
  ENSMUST00000098391.11 UniProtKB/TrEMBL
  ENSMUST00000176199.8 UniProtKB/TrEMBL
  ENSMUST00000176209.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.850 UniProtKB/TrEMBL
  3.40.50.200 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
InterPro EG-like_dom UniProtKB/TrEMBL
  Furin_repeat UniProtKB/TrEMBL
  Galactose-bd-like UniProtKB/TrEMBL
  GF_recep_IV UniProtKB/TrEMBL
  Growth_fac_rcpt UniProtKB/TrEMBL
  Kexin/furin UniProtKB/TrEMBL
  Peptidase_S8/S53_dom UniProtKB/TrEMBL
  Peptidase_S8/S53_dom_sf UniProtKB/TrEMBL
  Peptidase_S8_Asp-AS UniProtKB/TrEMBL
  Peptidase_S8_His-AS UniProtKB/TrEMBL
  Peptidase_S8_Ser-AS UniProtKB/TrEMBL
  Peptidase_S8_subtilisin-rel UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  PrprotnconvertsP UniProtKB/TrEMBL
  S8_pro-domain UniProtKB/TrEMBL
  S8_pro-domain_sf UniProtKB/TrEMBL
KEGG Report mmu:18553 UniProtKB/TrEMBL
MGD MGI:102897 ENTREZGENE
NCBI Gene 18553 ENTREZGENE
PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 6 UniProtKB/TrEMBL
  PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED UniProtKB/TrEMBL
Pfam GF_recep_IV UniProtKB/TrEMBL
  P_proprotein UniProtKB/TrEMBL
  Peptidase_S8 UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  S8_pro-domain UniProtKB/TrEMBL
PhenoGen Pcsk6 PhenoGen
PRINTS SUBTILISIN UniProtKB/TrEMBL
PROSITE P_HOMO_B UniProtKB/TrEMBL
  PLAC UniProtKB/TrEMBL
  SUBTILASE UniProtKB/TrEMBL
  SUBTILASE_ASP UniProtKB/TrEMBL
  SUBTILASE_HIS UniProtKB/TrEMBL
  SUBTILASE_SER UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  SM00261 UniProtKB/TrEMBL
Superfamily-SCOP Gal_bind_like UniProtKB/TrEMBL
  Grow_fac_recept UniProtKB/TrEMBL
  Pept_S8_S53 UniProtKB/TrEMBL
  Protease propeptides/inhibitors UniProtKB/TrEMBL
UniProt E9Q4D0 ENTREZGENE, UniProtKB/TrEMBL
  F6XJP7 ENTREZGENE, UniProtKB/TrEMBL
  H3BJL4_MOUSE UniProtKB/TrEMBL
  H3BLN2_MOUSE UniProtKB/TrEMBL
  O35171_MOUSE UniProtKB/TrEMBL
  Q62030 ENTREZGENE, UniProtKB/TrEMBL
  Q8C4U4_MOUSE UniProtKB/TrEMBL
  Q8R0Y1_MOUSE UniProtKB/TrEMBL
  Q99LE4_MOUSE UniProtKB/TrEMBL