Nme8 (NME/NM23 family member 8) - Rat Genome Database

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Gene: Nme8 (NME/NM23 family member 8) Mus musculus
Analyze
Symbol: Nme8
Name: NME/NM23 family member 8
RGD ID: 1552832
MGI Page MGI
Description: Predicted to enable 3'-5' exonuclease activity and microtubule binding activity. Acts upstream of or within cellular response to reactive oxygen species and flagellated sperm motility. Located in axoneme; sperm cytoplasmic droplet; and sperm principal piece. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 6. Orthologous to human NME8 (NME/NM23 family member 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700056P15Rik; 3'-5' exonuclease NME8; spermatid-specific thioredoxin-2; Sptr; Sptrx-2; thioredoxin domain containing 3 (spermatozoa); thioredoxin domain-containing protein 3; Txndc; Txndc3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391319,829,248 - 19,881,996 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1319,829,248 - 19,881,964 (-)EnsemblGRCm39 Ensembl
GRCm381319,645,078 - 19,697,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1319,645,078 - 19,697,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv371319,736,947 - 19,789,629 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361319,652,543 - 19,705,225 (-)NCBIMGSCv36mm8
Celera1319,988,291 - 19,996,418 (-)NCBICelera
Cytogenetic Map13A2NCBI
cM Map137.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Cloning and developmental analysis of murid spermatid-specific thioredoxin-2 (SPTRX-2), a novel sperm fibrous sheath protein and autoantigen. Miranda-Vizuete A, etal., J Biol Chem 2003 Nov 7;278(45):44874-85. Epub 2003 Aug 7.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:15781233   PMID:16141072   PMID:16141073   PMID:17360648   PMID:21677750   PMID:21873635   PMID:23707457  
PMID:38355793  


Genomics

Comparative Map Data
Nme8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391319,829,248 - 19,881,996 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1319,829,248 - 19,881,964 (-)EnsemblGRCm39 Ensembl
GRCm381319,645,078 - 19,697,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1319,645,078 - 19,697,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv371319,736,947 - 19,789,629 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361319,652,543 - 19,705,225 (-)NCBIMGSCv36mm8
Celera1319,988,291 - 19,996,418 (-)NCBICelera
Cytogenetic Map13A2NCBI
cM Map137.0NCBI
NME8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38737,848,597 - 37,900,397 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl737,848,597 - 37,900,397 (+)EnsemblGRCh38hg38GRCh38
GRCh37737,888,199 - 37,939,999 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36737,854,724 - 37,906,528 (+)NCBINCBI36Build 36hg18NCBI36
Build 34737,661,438 - 37,713,238NCBI
Celera737,872,948 - 37,924,718 (+)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef737,768,407 - 37,820,357 (+)NCBIHuRef
CHM1_1737,887,675 - 37,939,959 (+)NCBICHM1_1
T2T-CHM13v2.0737,989,652 - 38,041,414 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2737,926,134 - 37,977,903 (+)NCBI
Nme8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81749,932,861 - 50,000,610 (+)NCBIGRCr8
mRatBN7.21745,237,022 - 45,304,948 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1745,238,120 - 45,304,948 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1747,314,521 - 47,383,402 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01752,073,680 - 52,142,565 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01746,564,073 - 46,632,963 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01747,300,932 - 47,368,543 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1747,301,511 - 47,368,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01756,120,328 - 56,185,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41753,037,090 - 53,105,985 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11753,040,678 - 53,108,823 (+)NCBI
Celera1751,224,029 - 51,290,939 (-)NCBICelera
Cytogenetic Map17q11NCBI
Nme8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554605,680,678 - 5,718,628 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554605,672,768 - 5,718,707 (-)NCBIChiLan1.0ChiLan1.0
NME8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2642,326,546 - 42,733,330 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1790,651,590 - 91,058,066 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0738,128,610 - 38,536,611 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1738,708,937 - 38,757,802 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl738,708,937 - 38,757,795 (+)Ensemblpanpan1.1panPan2
NME8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,038,369 - 12,088,544 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,038,450 - 12,087,626 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1811,682,915 - 11,733,063 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01812,309,712 - 12,359,547 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11812,126,922 - 12,176,754 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,047,339 - 12,097,182 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01812,274,833 - 12,324,653 (-)NCBIUU_Cfam_GSD_1.0
Nme8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511893,964,657 - 94,040,183 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647813,177,529 - 13,243,037 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647813,176,388 - 13,243,043 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NME8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9108,358,535 - 108,392,781 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19108,358,289 - 108,393,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29119,105,762 - 119,136,177 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NME8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12120,617,683 - 20,670,346 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2120,620,941 - 20,668,888 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660621,671,514 - 1,725,043 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nme8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474023,349,858 - 23,396,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474023,351,832 - 23,396,905 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nme8
1961 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:178
Interacting mature miRNAs:190
Transcripts:ENSMUST00000039340, ENSMUST00000091763, ENSMUST00000144820
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301661Tshp13_mtooth shape 13 (mouse)Not determined13123454672Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13368020037680343Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse
1301984Pbd2_mpeak bone density 2 (mouse)Not determined131718950838947406Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
1301890Adip7_madiposity 7 (mouse)Not determined13123454672Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13361551237615672Mouse
1301227Skull19_mskull morphology 19 (mouse)Not determined13123454672Mouse
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000039340   ⟹   ENSMUSP00000047052
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1319,829,248 - 19,881,930 (-)Ensembl
GRCm38.p6 Ensembl1319,645,078 - 19,697,760 (-)Ensembl
RefSeq Acc Id: ENSMUST00000091763   ⟹   ENSMUSP00000089358
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1319,829,248 - 19,881,964 (-)Ensembl
GRCm38.p6 Ensembl1319,645,078 - 19,697,794 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1319,829,248 - 19,873,781 (-)Ensembl
GRCm38.p6 Ensembl1319,645,078 - 19,689,611 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1319,829,248 - 19,873,734 (-)Ensembl
GRCm38.p6 Ensembl1319,645,078 - 19,689,564 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223286
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1319,841,766 - 19,881,927 (-)Ensembl
GRCm38.p6 Ensembl1319,657,596 - 19,697,757 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223466   ⟹   ENSMUSP00000152780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1319,829,248 - 19,859,901 (-)Ensembl
GRCm38.p6 Ensembl1319,645,078 - 19,675,731 (-)Ensembl
RefSeq Acc Id: NM_001167909   ⟹   NP_001161381
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391319,829,248 - 19,881,930 (-)NCBI
GRCm381319,645,078 - 19,697,760 (-)NCBI
MGSCv371319,736,947 - 19,789,629 (-)RGD
Celera1319,988,322 - 19,996,418 (-)ENTREZGENE
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_181591   ⟹   NP_853622
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391319,829,248 - 19,881,930 (-)NCBI
GRCm381319,645,078 - 19,697,760 (-)NCBI
MGSCv371319,736,947 - 19,789,629 (-)RGD
Celera1319,988,322 - 19,996,418 (-)ENTREZGENE
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011244353   ⟹   XP_011242655
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391319,829,248 - 19,860,983 (-)NCBI
GRCm381319,645,078 - 19,676,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315615   ⟹   XP_017171104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391319,841,709 - 19,881,994 (-)NCBI
GRCm381319,657,539 - 19,697,824 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315616   ⟹   XP_017171105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391319,844,735 - 19,881,996 (-)NCBI
GRCm381319,660,565 - 19,697,826 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780821
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391319,829,376 - 19,881,995 (-)NCBI
GRCm381319,645,206 - 19,697,825 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_853622   ⟸   NM_181591
- Peptide Label: isoform 1
- UniProtKB: Q80W74 (UniProtKB/Swiss-Prot),   Q715T0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001161381   ⟸   NM_001167909
- Peptide Label: isoform 2
- UniProtKB: Q715T0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011242655   ⟸   XM_011244353
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017171104   ⟸   XM_017315615
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017171105   ⟸   XM_017315616
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000089358   ⟸   ENSMUST00000091763
RefSeq Acc Id: ENSMUSP00000152780   ⟸   ENSMUST00000223466
RefSeq Acc Id: ENSMUSP00000047052   ⟸   ENSMUST00000039340
Protein Domains
Nucleoside diphosphate kinase-like   Thioredoxin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q715T0-F1-model_v2 AlphaFold Q715T0 1-586 view protein structure

Promoters
RGD ID:8679672
Promoter ID:EPDNEW_M17867
Type:initiation region
Name:Nme8_1
Description:Mus musculus NME/NM23 family member 8 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381319,697,751 - 19,697,811EPDNEW
RGD ID:6824480
Promoter ID:MM_KWN:13338
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:OTTMUST00000059160
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361319,782,226 - 19,782,726 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920662 AgrOrtholog
Ensembl Genes ENSMUSG00000041138 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039340 ENTREZGENE
  ENSMUST00000039340.15 UniProtKB/Swiss-Prot
  ENSMUST00000091763 ENTREZGENE
  ENSMUST00000091763.3 UniProtKB/Swiss-Prot
  ENSMUST00000223286 ENTREZGENE
  ENSMUST00000223466 ENTREZGENE
  ENSMUST00000223466.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.141 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/Swiss-Prot
InterPro NDK-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NDK-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/Swiss-Prot
  Thioredoxin_CS UniProtKB/Swiss-Prot
  Thioredoxin_domain UniProtKB/Swiss-Prot
KEGG Report mmu:73412 UniProtKB/Swiss-Prot
MGD MGI:1920662 ENTREZGENE
NCBI Gene 73412 ENTREZGENE
PANTHER NME/NM23 FAMILY MEMBER 8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THIOREDOXIN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam NDK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thioredoxin UniProtKB/Swiss-Prot
PhenoGen Nme8 PhenoGen
PROSITE NDPK_LIKE UniProtKB/Swiss-Prot
  THIOREDOXIN_1 UniProtKB/Swiss-Prot
SMART NDK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
  SSF54919 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VK46_MOUSE UniProtKB/TrEMBL
  Q715T0 ENTREZGENE
  Q80W74 ENTREZGENE
  TXND3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q80W74 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-05 Nme8  NME/NM23 family member 8  Txndc3  thioredoxin domain containing 3 (spermatozoa)  Symbol and/or name change 5135510 APPROVED