Amigo1 (adhesion molecule with Ig like domain 1) - Rat Genome Database

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Gene: Amigo1 (adhesion molecule with Ig like domain 1) Mus musculus
Analyze
Symbol: Amigo1
Name: adhesion molecule with Ig like domain 1
RGD ID: 1552604
MGI Page MGI
Description: Enables potassium channel regulator activity. Involved in positive regulation of potassium ion transmembrane transport. Acts upstream of or within positive regulation of synapse assembly. Located in dendrite and neuronal cell body membrane. Part of voltage-gated potassium channel complex. Is expressed in several structures, including branchial arch; central nervous system; genitourinary system; gut; and sensory organ. Orthologous to human AMIGO1 (adhesion molecule with Ig like domain 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A; ali2; alivin 2; alivin-2; Amigo; AMIGO-1; amphoterin induced gene and ORF (Amigo); amphoterin-induced protein 1; MGC25558; RP23-89M15.6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,093,605 - 108,099,602 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,093,651 - 108,099,602 (+)EnsemblGRCm39 Ensembl
GRCm383108,186,289 - 108,192,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,186,335 - 108,192,286 (+)EnsemblGRCm38mm10GRCm38
MGSCv373107,989,253 - 107,994,695 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,314,391 - 108,319,833 (+)NCBIMGSCv36mm8
Celera3110,520,189 - 110,525,569 (+)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. AMIGO, a transmembrane protein implicated in axon tract development, defines a novel protein family with leucine-rich repeats. Kuja-Panula J, etal., J Cell Biol 2003 Mar 17;160(6):963-73.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. AMIGO-Kv2.1 Potassium Channel Complex Is Associated With Schizophrenia-Related Phenotypes. Peltola MA, etal., Schizophr Bull. 2016 Jan;42(1):191-201. doi: 10.1093/schbul/sbv105. Epub 2015 Aug 3.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8010975   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12843293   PMID:15368895   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18848646   PMID:19755105   PMID:21873635   PMID:21938721   PMID:22056818   PMID:24194600   PMID:24613359   PMID:24952961   PMID:25826454   PMID:27889896  
PMID:31315048   PMID:32325033   PMID:32708917   PMID:35169021   PMID:38355793  


Genomics

Comparative Map Data
Amigo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,093,605 - 108,099,602 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,093,651 - 108,099,602 (+)EnsemblGRCm39 Ensembl
GRCm383108,186,289 - 108,192,286 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,186,335 - 108,192,286 (+)EnsemblGRCm38mm10GRCm38
MGSCv373107,989,253 - 107,994,695 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,314,391 - 108,319,833 (+)NCBIMGSCv36mm8
Celera3110,520,189 - 110,525,569 (+)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.86NCBI
AMIGO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381109,504,178 - 109,509,727 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1109,504,178 - 109,509,738 (-)EnsemblGRCh38hg38GRCh38
GRCh371110,046,800 - 110,052,349 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,850,969 - 109,853,859 (-)NCBINCBI36Build 36hg18NCBI36
Celera1108,318,787 - 108,321,677 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,942,365 - 107,945,255 (-)NCBIHuRef
CHM1_11110,164,300 - 110,167,190 (-)NCBICHM1_1
T2T-CHM13v2.01109,536,945 - 109,542,494 (-)NCBIT2T-CHM13v2.0
Amigo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,511,285 - 198,516,744 (+)NCBIGRCr8
mRatBN7.22195,823,138 - 195,828,593 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,823,042 - 195,829,585 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,467,204 - 203,468,685 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,349,325 - 201,350,806 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,166,274 - 196,167,755 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,977,125 - 210,982,582 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,977,938 - 210,982,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,446,215 - 230,451,546 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42203,752,632 - 203,754,113 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12203,715,385 - 203,716,867 (+)NCBI
Celera2188,468,900 - 188,470,381 (+)NCBICelera
Cytogenetic Map2q34NCBI
Amigo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,924,240 - 12,930,362 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,918,270 - 12,930,362 (-)NCBIChiLan1.0ChiLan1.0
AMIGO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21117,794,747 - 117,800,316 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,954,644 - 116,960,222 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,881,753 - 111,887,308 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,110,361 - 111,115,714 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1111,113,632 - 111,115,113 (-)Ensemblpanpan1.1panPan2
AMIGO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,351,373 - 42,356,948 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,351,373 - 42,354,204 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,126,170 - 45,134,290 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,681,888 - 42,690,007 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl642,681,994 - 42,684,093 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,414,685 - 42,422,802 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,372,526 - 42,380,669 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,808,091 - 42,815,651 (+)NCBIUU_Cfam_GSD_1.0
Amigo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,115,946 - 19,122,210 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704991,306 - 998,198 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704992,858 - 998,200 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMIGO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4110,620,444 - 110,628,833 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14110,620,429 - 110,631,549 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,079,460 - 121,085,286 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AMIGO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,037,679 - 24,040,566 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,038,475 - 24,039,956 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603834,417,175 - 34,422,765 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Amigo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247725,231,266 - 5,236,496 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247725,231,266 - 5,236,703 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Amigo1
146 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3208
Count of miRNA genes:721
Interacting mature miRNAs:935
Transcripts:ENSMUST00000050909, ENSMUST00000106656, ENSMUST00000106659, ENSMUST00000106661, ENSMUST00000155782
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1357599msrvh1_mmodifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 (mouse)Not determined3107376936115624197Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse

Markers in Region
Amigo1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383108,187,503 - 108,188,398UniSTSGRCm38
MGSCv373107,990,421 - 107,991,316UniSTSGRCm37
Celera3110,521,295 - 110,522,190UniSTS
Cytogenetic Map3F2.3UniSTS
cM Map3 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB167509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY237008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB645598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000050909   ⟹   ENSMUSP00000061244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,093,651 - 108,099,092 (+)Ensembl
GRCm38.p6 Ensembl3108,186,335 - 108,191,776 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106656   ⟹   ENSMUSP00000102267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,093,674 - 108,099,602 (+)Ensembl
GRCm38.p6 Ensembl3108,186,358 - 108,192,286 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106659   ⟹   ENSMUSP00000102270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,093,666 - 108,099,093 (+)Ensembl
GRCm38.p6 Ensembl3108,186,350 - 108,191,777 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106661   ⟹   ENSMUSP00000102272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,095,359 - 108,099,091 (+)Ensembl
GRCm38.p6 Ensembl3108,188,043 - 108,191,775 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155782   ⟹   ENSMUSP00000142852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,095,417 - 108,099,083 (+)Ensembl
GRCm38.p6 Ensembl3108,188,101 - 108,191,767 (+)Ensembl
RefSeq Acc Id: NM_001004293   ⟹   NP_001004293
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
GRCm383108,186,289 - 108,192,286 (+)NCBI
MGSCv373107,989,253 - 107,994,695 (+)RGD
Celera3110,520,143 - 110,526,078 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001287093   ⟹   NP_001274022
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
GRCm383108,186,289 - 108,192,286 (+)NCBI
Celera3110,520,143 - 110,526,078 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001411560   ⟹   NP_001398489
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
RefSeq Acc Id: NM_001411561   ⟹   NP_001398490
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
RefSeq Acc Id: NM_001411562   ⟹   NP_001398491
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
RefSeq Acc Id: NM_001411563   ⟹   NP_001398492
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
RefSeq Acc Id: NM_001411564   ⟹   NP_001398493
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
RefSeq Acc Id: NM_001411565   ⟹   NP_001398494
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
RefSeq Acc Id: NM_146137   ⟹   NP_666249
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,677 - 108,099,602 (+)NCBI
GRCm383108,186,289 - 108,192,286 (+)NCBI
MGSCv373107,989,253 - 107,994,695 (+)RGD
Celera3110,520,143 - 110,526,078 (+)NCBI
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036163076   ⟹   XP_036018969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,093,605 - 108,099,095 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666249   ⟸   NM_146137
- Peptide Label: isoform a precursor
- UniProtKB: Q8R5D4 (UniProtKB/Swiss-Prot),   Q69ZQ0 (UniProtKB/Swiss-Prot),   A2AE40 (UniProtKB/Swiss-Prot),   Q921U9 (UniProtKB/Swiss-Prot),   Q80ZD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001004293   ⟸   NM_001004293
- Peptide Label: isoform a precursor
- UniProtKB: Q8R5D4 (UniProtKB/Swiss-Prot),   Q69ZQ0 (UniProtKB/Swiss-Prot),   A2AE40 (UniProtKB/Swiss-Prot),   Q921U9 (UniProtKB/Swiss-Prot),   Q80ZD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001274022   ⟸   NM_001287093
- Peptide Label: isoform b precursor
- UniProtKB: Q80ZD8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000061244   ⟸   ENSMUST00000050909
RefSeq Acc Id: ENSMUSP00000102267   ⟸   ENSMUST00000106656
RefSeq Acc Id: ENSMUSP00000102270   ⟸   ENSMUST00000106659
RefSeq Acc Id: ENSMUSP00000102272   ⟸   ENSMUST00000106661
RefSeq Acc Id: ENSMUSP00000142852   ⟸   ENSMUST00000155782
RefSeq Acc Id: XP_036018969   ⟸   XM_036163076
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001398490   ⟸   NM_001411561
- Peptide Label: isoform a precursor
- UniProtKB: Q8R5D4 (UniProtKB/Swiss-Prot),   Q80ZD8 (UniProtKB/Swiss-Prot),   Q69ZQ0 (UniProtKB/Swiss-Prot),   A2AE40 (UniProtKB/Swiss-Prot),   Q921U9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398492   ⟸   NM_001411563
- Peptide Label: isoform d precursor
RefSeq Acc Id: NP_001398494   ⟸   NM_001411565
- Peptide Label: isoform e precursor
RefSeq Acc Id: NP_001398489   ⟸   NM_001411560
- Peptide Label: isoform a precursor
- UniProtKB: Q8R5D4 (UniProtKB/Swiss-Prot),   Q80ZD8 (UniProtKB/Swiss-Prot),   Q69ZQ0 (UniProtKB/Swiss-Prot),   A2AE40 (UniProtKB/Swiss-Prot),   Q921U9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001398491   ⟸   NM_001411562
- Peptide Label: isoform d precursor
RefSeq Acc Id: NP_001398493   ⟸   NM_001411564
- Peptide Label: isoform e precursor
Protein Domains
Ig-like   Ig-like C2-type   LRRCT   LRRNT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80ZD8-F1-model_v2 AlphaFold Q80ZD8 1-492 view protein structure

Promoters
RGD ID:6833416
Promoter ID:MM_KWN:35761
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Lung
Transcripts:ENSMUST00000106656,   NM_146137,   OTTMUST00000016569
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363107,989,281 - 107,989,781 (+)MPROMDB
RGD ID:6882058
Promoter ID:EPDNEW_M4480
Type:initiation region
Name:Amigo1_1
Description:Mus musculus adhesion molecule with Ig like domain 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383108,186,306 - 108,186,366EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2653612 AgrOrtholog
Ensembl Genes ENSMUSG00000050947 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050909 ENTREZGENE
  ENSMUST00000050909.7 UniProtKB/Swiss-Prot
  ENSMUST00000106656 ENTREZGENE
  ENSMUST00000106656.2 UniProtKB/Swiss-Prot
  ENSMUST00000106659 ENTREZGENE
  ENSMUST00000106659.3 UniProtKB/Swiss-Prot
  ENSMUST00000106661.4 UniProtKB/TrEMBL
  ENSMUST00000155782.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot
InterPro AMIGO UniProtKB/Swiss-Prot
  Cys-rich_flank_reg_C UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_I-set UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:229715 UniProtKB/Swiss-Prot
MGD MGI:2653612 ENTREZGENE
NCBI Gene 229715 ENTREZGENE
PANTHER PTHR24368 UniProtKB/Swiss-Prot
  PTHR24368:SF1 UniProtKB/Swiss-Prot
Pfam I-set UniProtKB/Swiss-Prot
  LRR_8 UniProtKB/Swiss-Prot
PhenoGen Amigo1 PhenoGen
PRINTS LEURICHRPT UniProtKB/Swiss-Prot
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  LRR_TYP UniProtKB/Swiss-Prot
  LRRCT UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
  SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JEP5_MOUSE UniProtKB/TrEMBL
  A2AE38_MOUSE UniProtKB/TrEMBL
  A2AE40 ENTREZGENE
  AMGO1_MOUSE UniProtKB/Swiss-Prot
  Q69ZQ0 ENTREZGENE
  Q80ZD8 ENTREZGENE
  Q8R5D4 ENTREZGENE
  Q921U9 ENTREZGENE
UniProt Secondary A2AE40 UniProtKB/Swiss-Prot
  Q69ZQ0 UniProtKB/Swiss-Prot
  Q8R5D4 UniProtKB/Swiss-Prot
  Q921U9 UniProtKB/Swiss-Prot