Or1j4 (olfactory receptor family 1 subfamily J member 4) - Rat Genome Database

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Gene: Or1j4 (olfactory receptor family 1 subfamily J member 4) Mus musculus
Analyze
Symbol: Or1j4
Name: olfactory receptor family 1 subfamily J member 4
RGD ID: 1552585
MGI Page MGI
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR1J4 (olfactory receptor family 1 subfamily J member 4).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GA_x6K02T2NLDC-33544602-33545540; MOR136-; MOR136-13; olfactory receptor 350; olfactory receptor MOR136-13; Olfr350
RGD Orthologs
Human
Rat
Bonobo
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39236,740,060 - 36,740,998 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl236,736,322 - 36,741,714 (+)EnsemblGRCm39 Ensembl
GRCm38236,850,048 - 36,850,986 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl236,846,310 - 36,851,702 (+)EnsemblGRCm38mm10GRCm38
MGSCv37236,705,568 - 36,706,506 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36236,672,057 - 36,672,995 (+)NCBIMGSCv36mm8
Celera236,544,602 - 36,545,540 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:12477932   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or1j4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39236,740,060 - 36,740,998 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl236,736,322 - 36,741,714 (+)EnsemblGRCm39 Ensembl
GRCm38236,850,048 - 36,850,986 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl236,846,310 - 36,851,702 (+)EnsemblGRCm38mm10GRCm38
MGSCv37236,705,568 - 36,706,506 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36236,672,057 - 36,672,995 (+)NCBIMGSCv36mm8
Celera236,544,602 - 36,545,540 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.19NCBI
OR1J4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389122,519,141 - 122,520,082 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9122,519,141 - 122,520,082 (+)EnsemblGRCh38hg38GRCh38
GRCh379125,281,420 - 125,282,361 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369124,321,241 - 124,322,182 (+)NCBINCBI36Build 36hg18NCBI36
Build 349122,360,973 - 122,361,915NCBI
Celera995,929,745 - 95,930,686 (+)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef994,896,123 - 94,897,064 (+)NCBIHuRef
CHM1_19125,429,453 - 125,430,394 (+)NCBICHM1_1
T2T-CHM13v2.09134,716,588 - 134,717,529 (+)NCBIT2T-CHM13v2.0
Or1j4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8340,800,528 - 40,801,466 (+)NCBIGRCr8
mRatBN7.2320,409,641 - 20,410,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl320,399,989 - 20,410,939 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx323,477,577 - 23,478,515 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0332,062,479 - 32,063,417 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0330,287,454 - 30,288,392 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0320,878,701 - 20,879,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl320,878,701 - 20,879,639 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0326,120,364 - 26,121,302 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4316,374,293 - 16,375,231 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1316,270,664 - 16,271,603 (+)NCBI
Celera315,080,832 - 15,081,770 (+)NCBICelera
Cytogenetic Map3p11NCBI
LOC100994379
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,823,259 - 16,825,375 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1916,826,709 - 16,827,723 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0993,645,865 - 93,647,017 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19121,986,686 - 121,987,627 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9121,986,686 - 121,987,627 (+)Ensemblpanpan1.1panPan2
LOC110258977
(Sus scrofa - pig)		 No map positions available.

Variants

.
Variants in Or1j4
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:34
Interacting mature miRNAs:34
Transcripts:ENSMUST00000055130
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
13464253Ifvrq1_minfluenza virus resistance QTL 1 (mouse)23303449252034492Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse

Markers in Region
UniSTS:489396  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38236,850,048 - 36,850,986UniSTSGRCm38
MGSCv37236,705,568 - 36,706,506UniSTSGRCm37
Celera236,544,602 - 36,545,540UniSTS
Cytogenetic Map2C1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000055130   ⟹   ENSMUSP00000053105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl236,740,060 - 36,740,998 (+)Ensembl
GRCm38.p6 Ensembl236,850,048 - 36,850,986 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214457   ⟹   ENSMUSP00000150158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl236,736,322 - 36,741,714 (+)Ensembl
GRCm38.p6 Ensembl236,846,310 - 36,851,702 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215100   ⟹   ENSMUSP00000149667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl236,736,322 - 36,741,714 (+)Ensembl
GRCm38.p6 Ensembl236,846,310 - 36,851,702 (+)Ensembl
RefSeq Acc Id: NM_146627   ⟹   NP_666838
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39236,740,060 - 36,740,998 (+)NCBI
GRCm38236,850,048 - 36,850,986 (+)ENTREZGENE
MGSCv37236,705,568 - 36,706,506 (+)RGD
Celera236,544,602 - 36,545,540 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666838   ⟸   NM_146627
- UniProtKB: Q8VFP8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000053105   ⟸   ENSMUST00000055130
RefSeq Acc Id: ENSMUSP00000149667   ⟸   ENSMUST00000215100
RefSeq Acc Id: ENSMUSP00000150158   ⟸   ENSMUST00000214457
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VFP8-F1-model_v2 AlphaFold Q8VFP8 1-312 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030184 AgrOrtholog
Ensembl Genes ENSMUSG00000050015 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055130 ENTREZGENE
  ENSMUST00000055130.3 UniProtKB/TrEMBL
  ENSMUST00000214457.2 UniProtKB/TrEMBL
  ENSMUST00000215100.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258620 UniProtKB/TrEMBL
MGD MGI:3030184 ENTREZGENE
NCBI Gene 258620 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 1J4 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or1j4 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt Q8VFP8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-24 Or1j4  olfactory receptor family 1 subfamily J member 4  Olfr350  olfactory receptor 350  Symbol and/or name change 5135510 APPROVED