Trmt11 (tRNA methyltransferase 11) - Rat Genome Database

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Gene: Trmt11 (tRNA methyltransferase 11) Mus musculus
Analyze
Symbol: Trmt11
Name: tRNA methyltransferase 11
RGD ID: 1552155
MGI Page MGI
Description: Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation and tRNA processing. Predicted to be active in cytoplasm. Is expressed in submandibular gland primordium. Orthologous to human TRMT11 (tRNA methyltransferase 11 homolog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410075D05Rik; 3110045I18Rik; AW213713; tRNA (guanine(10)-N2)-methyltransferase homolog; tRNA guanosine-2'-O-methyltransferase TRM11 homolog; tRNA methyltransferase 11 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391030,410,218 - 30,477,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1030,410,221 - 30,476,745 (-)EnsemblGRCm39 Ensembl
GRCm381030,534,225 - 30,602,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1030,534,225 - 30,600,749 (-)EnsemblGRCm38mm10GRCm38
MGSCv371030,254,031 - 30,320,555 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361030,223,641 - 30,290,108 (-)NCBIMGSCv36mm8
Celera1031,459,990 - 31,526,850 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1017.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  
PMID:32325033  


Genomics

Comparative Map Data
Trmt11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391030,410,218 - 30,477,598 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1030,410,221 - 30,476,745 (-)EnsemblGRCm39 Ensembl
GRCm381030,534,225 - 30,602,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1030,534,225 - 30,600,749 (-)EnsemblGRCm38mm10GRCm38
MGSCv371030,254,031 - 30,320,555 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361030,223,641 - 30,290,108 (-)NCBIMGSCv36mm8
Celera1031,459,990 - 31,526,850 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1017.07NCBI
TRMT11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386125,986,540 - 126,272,343 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6125,986,479 - 126,203,817 (+)EnsemblGRCh38hg38GRCh38
GRCh376126,307,686 - 126,400,874 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366126,349,269 - 126,402,115 (+)NCBINCBI36Build 36hg18NCBI36
Build 346126,349,323 - 126,402,111NCBI
Celera6127,049,859 - 127,102,703 (+)NCBICelera
Cytogenetic Map6q22.32NCBI
HuRef6123,883,922 - 123,936,767 (+)NCBIHuRef
CHM1_16126,571,484 - 126,624,331 (+)NCBICHM1_1
T2T-CHM13v2.06127,175,155 - 127,468,301 (+)NCBIT2T-CHM13v2.0
Trmt11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8128,873,361 - 28,928,679 (+)NCBIGRCr8
mRatBN7.2127,054,437 - 27,109,765 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl127,054,420 - 27,201,610 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,805,590 - 26,860,866 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0132,805,396 - 32,860,678 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0127,006,171 - 27,061,450 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0129,432,109 - 29,576,079 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl129,432,152 - 29,487,473 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0130,871,680 - 31,014,648 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4127,737,888 - 27,793,207 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1127,740,832 - 27,796,148 (+)NCBI
Celera125,731,346 - 25,786,348 (+)NCBICelera
Cytogenetic Map1p11NCBI
Trmt11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554367,274,745 - 7,320,997 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554367,274,848 - 7,318,762 (+)NCBIChiLan1.0ChiLan1.0
TRMT11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25145,976,663 - 146,029,505 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16143,881,943 - 143,975,245 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06123,770,783 - 123,825,179 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16127,888,697 - 127,941,505 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6127,888,697 - 127,941,505 (+)Ensemblpanpan1.1panPan2
TRMT11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1164,861,404 - 64,917,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl164,834,770 - 65,064,562 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha165,671,144 - 65,727,209 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0165,071,886 - 65,127,836 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl165,036,893 - 65,127,836 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1164,999,643 - 65,055,645 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0164,788,305 - 64,844,339 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0165,438,364 - 65,494,421 (+)NCBIUU_Cfam_GSD_1.0
Trmt11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946114,924,830 - 114,978,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366393,440,703 - 3,494,362 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366393,442,026 - 3,494,303 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl136,940,334 - 37,002,056 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1136,930,857 - 37,002,079 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2140,704,053 - 40,774,748 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11347,680,321 - 47,735,103 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1347,680,332 - 47,734,857 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604019,992,464 - 20,046,599 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Trmt11
1801 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:240
Count of miRNA genes:222
Interacting mature miRNAs:231
Transcripts:ENSMUST00000019927
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12879494Facq1_mfear acquisition QTL 1 (mouse)10131279130Mouse
15039341Nmrs28_mNAFLD-associated magnetic resonance shift 28 (mouse)1035100134351001Mouse
1357813Ath20_matherosclerosis 20 (mouse)Not determined10328318537283334Mouse
1300790Pgia6_mproteoglycan induced arthritis 6 (mouse)Not determined10381017137810295Mouse
1300997Eae15_msusceptibility to experimental allergic encephalomyelitis 15 (mouse)Not determined10440815438408276Mouse
13208561Wght8_mweight 8 (mouse)10495000043875996Mouse
1302092Ath11_matherosclerosis 11 (mouse)Not determined10615194558693521Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1558865Lith21_mlithogenic gene 21 (mouse)Not determined10852500342525126Mouse
1301448Pas11_mpulmonary adenoma susceptibility 11 (mouse)Not determined10989026443890391Mouse
1301129Alcp15_malcohol preference locus 15 (mouse)Not determined10989026443890391Mouse
1302133Alcp16_malcohol preference locus 16 (mouse)Not determined10989026443890391Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
10755518Chol16_mcholesterol 16 (mouse)101891504352915043Mouse
1302160Mbis2_mMycobacterium bovis-induced systemic lupus erythematosus 2 (mouse)Not determined102028318556031223Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102159119268091639Mouse
26884394Humsd3_mhumerus midshaft diameter 3, 10 week (mouse)102237589951076096Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
4142209Psrs1_mpsoriasis susceptibility 1 (mouse)Not determined102689026446720483Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102972040363720483Mouse

Markers in Region
AW213713  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381030,535,042 - 30,535,123UniSTSGRCm38
MGSCv371030,254,848 - 30,254,929UniSTSGRCm37
Celera1031,460,807 - 31,460,888UniSTS
Cytogenetic Map10A4UniSTS
Whitehead/MRC_RH10366.4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF532979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG083636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY259542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000019927   ⟹   ENSMUSP00000019927
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1030,410,221 - 30,476,745 (-)Ensembl
GRCm38.p6 Ensembl1030,534,225 - 30,600,749 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215041   ⟹   ENSMUSP00000151084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1030,435,117 - 30,466,105 (-)Ensembl
GRCm38.p6 Ensembl1030,559,121 - 30,590,109 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215595   ⟹   ENSMUSP00000149835
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1030,410,711 - 30,476,691 (-)Ensembl
GRCm38.p6 Ensembl1030,534,715 - 30,600,695 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216638
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1030,472,323 - 30,476,691 (-)Ensembl
GRCm38.p6 Ensembl1030,596,327 - 30,600,695 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216705   ⟹   ENSMUSP00000149246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1030,465,951 - 30,476,646 (-)Ensembl
GRCm38.p6 Ensembl1030,589,955 - 30,600,650 (-)Ensembl
RefSeq Acc Id: ENSMUST00000216790   ⟹   ENSMUSP00000149782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1030,441,195 - 30,476,673 (-)Ensembl
GRCm38.p6 Ensembl1030,565,199 - 30,600,677 (-)Ensembl
RefSeq Acc Id: NM_001358806   ⟹   NP_001345735
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,221 - 30,476,696 (-)NCBI
GRCm381030,534,225 - 30,600,700 (-)NCBI
Sequence:
RefSeq Acc Id: NM_028604   ⟹   NP_082880
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,221 - 30,476,696 (-)NCBI
GRCm381030,534,225 - 30,600,700 (-)NCBI
MGSCv371030,254,031 - 30,320,555 (-)RGD
Celera1031,459,990 - 31,526,850 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512877   ⟹   XP_006512940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,218 - 30,477,598 (-)NCBI
GRCm381030,534,712 - 30,601,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006512880   ⟹   XP_006512943
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,218 - 30,476,711 (-)NCBI
GRCm381030,534,712 - 30,600,717 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245317   ⟹   XP_030101177
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,218 - 30,476,701 (-)NCBI
GRCm381030,534,712 - 30,600,671 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245319   ⟹   XP_030101179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,218 - 30,477,577 (-)NCBI
GRCm381030,534,712 - 30,601,581 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245320   ⟹   XP_030101180
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,218 - 30,476,682 (-)NCBI
GRCm381030,534,712 - 30,600,686 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156047   ⟹   XP_036011940
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,218 - 30,476,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156048   ⟹   XP_036011941
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391030,410,218 - 30,476,511 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_082880   ⟸   NM_028604
- Peptide Label: isoform 1
- UniProtKB: Q80Y71 (UniProtKB/Swiss-Prot),   Q9CWH5 (UniProtKB/Swiss-Prot),   E9QKG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006512940   ⟸   XM_006512877
- Peptide Label: isoform X1
- UniProtKB: Q9CWH5 (UniProtKB/Swiss-Prot),   Q80Y71 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512943   ⟸   XM_006512880
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001345735   ⟸   NM_001358806
- Peptide Label: isoform 2
RefSeq Acc Id: XP_030101179   ⟸   XM_030245319
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030101180   ⟸   XM_030245320
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030101177   ⟸   XM_030245317
- Peptide Label: isoform X3
- UniProtKB: Q9CWH5 (UniProtKB/Swiss-Prot),   Q80Y71 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000149782   ⟸   ENSMUST00000216790
RefSeq Acc Id: ENSMUSP00000149246   ⟸   ENSMUST00000216705
RefSeq Acc Id: ENSMUSP00000149835   ⟸   ENSMUST00000215595
RefSeq Acc Id: ENSMUSP00000019927   ⟸   ENSMUST00000019927
RefSeq Acc Id: ENSMUSP00000151084   ⟸   ENSMUST00000215041
RefSeq Acc Id: XP_036011940   ⟸   XM_036156047
- Peptide Label: isoform X2
- UniProtKB: Q9CWH5 (UniProtKB/Swiss-Prot),   Q80Y71 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036011941   ⟸   XM_036156048
- Peptide Label: isoform X5
Protein Domains
UPF0020

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CWH5-F1-model_v2 AlphaFold Q9CWH5 1-460 view protein structure

Promoters
RGD ID:6820053
Promoter ID:MM_KWN:3840
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_028604,   UC007ETF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361030,320,536 - 30,321,317 (-)MPROMDB
RGD ID:8671736
Promoter ID:EPDNEW_M13898
Type:multiple initiation site
Name:Trmt11_1
Description:Mus musculus tRNA methyltransferase 11 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381030,600,676 - 30,600,736EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920931 AgrOrtholog
Ensembl Genes ENSMUSG00000019792 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019927 ENTREZGENE
  ENSMUST00000019927.7 UniProtKB/TrEMBL
  ENSMUST00000215041.2 UniProtKB/TrEMBL
  ENSMUST00000215595.2 UniProtKB/TrEMBL
  ENSMUST00000216705.2 UniProtKB/TrEMBL
  ENSMUST00000216790.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DNA_methylase_N6_adenine_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_methylase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA_mtfrase_TRM11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1920931 ENTREZGENE
NCBI Gene 73681 ENTREZGENE
PANTHER RNA METHYLASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRNA (GUANINE(10)-N2)-METHYLTRANSFERASE HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UPF0020 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trmt11 PhenoGen
PIRSF tRNA_mtfrase_TRM11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS N12N6MTFRASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE N6_MTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM_MT_TRM11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SQZ0_MOUSE UniProtKB/TrEMBL
  A0A1L1SSB7_MOUSE UniProtKB/TrEMBL
  A0A1L1SVA9_MOUSE UniProtKB/TrEMBL
  E9QKG3 ENTREZGENE, UniProtKB/TrEMBL
  Q80Y71 ENTREZGENE
  Q9CWH5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q80Y71 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Trmt11  tRNA methyltransferase 11    tRNA methyltransferase 11 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED