Or14c39 (olfactory receptor family 14 subfamily C member 39) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Or14c39 (olfactory receptor family 14 subfamily C member 39) Mus musculus
Analyze
Symbol: Or14c39
Name: olfactory receptor family 14 subfamily C member 39
RGD ID: 1551584
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in membrane. Orthologous to human OR14C36 (olfactory receptor family 14 subfamily C member 36).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2NHDJ-9425121-9424195; MOR220; MOR220-2; olfactory receptor 292; olfactory receptor MOR220-2; Olfr292
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39786,337,549 - 86,344,592 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl786,337,538 - 86,346,715 (+)EnsemblGRCm39 Ensembl
GRCm38786,688,341 - 86,695,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl786,688,330 - 86,697,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv37793,836,851 - 93,843,894 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36786,570,219 - 86,571,145 (+)NCBIMGSCv36mm8
Celera784,059,830 - 84,066,682 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map748.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (ISA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or14c39
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39786,337,549 - 86,344,592 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl786,337,538 - 86,346,715 (+)EnsemblGRCm39 Ensembl
GRCm38786,688,341 - 86,695,384 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl786,688,330 - 86,697,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv37793,836,851 - 93,843,894 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36786,570,219 - 86,571,145 (+)NCBIMGSCv36mm8
Celera784,059,830 - 84,066,682 (+)NCBICelera
Cytogenetic Map7D3NCBI
cM Map748.51NCBI
OR14C36
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381248,348,775 - 248,349,713 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,348,775 - 248,349,713 (+)EnsemblGRCh38hg38GRCh38
GRCh371248,512,077 - 248,513,015 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,578,700 - 246,579,638 (+)NCBINCBI36Build 36hg18NCBI36
Build 341244,838,117 - 244,839,056NCBI
Celera1221,796,592 - 221,797,530 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1218,895,544 - 218,896,482 (+)NCBIHuRef
CHM1_11249,784,276 - 249,785,214 (+)NCBICHM1_1
T2T-CHM13v2.01247,775,304 - 247,776,242 (+)NCBIT2T-CHM13v2.0
Or14c39b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81149,742,340 - 149,743,269 (+)NCBIGRCr8
mRatBN7.21140,329,678 - 140,330,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1140,329,678 - 140,330,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1148,233,824 - 148,234,753 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01155,404,465 - 155,405,394 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01148,278,396 - 148,279,325 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01150,225,373 - 150,226,302 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1150,225,373 - 150,226,302 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01156,533,564 - 156,534,493 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41142,835,594 - 142,836,523 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11142,913,999 - 142,914,929 (+)NCBI
Celera1138,672,627 - 138,673,556 (+)NCBICelera
Cytogenetic Map1q32NCBI
LOC100973979
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21701,661 - 702,599 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11977,927 - 978,866 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01223,985,485 - 223,986,423 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,431,538 - 229,432,475 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC106559671
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,384,785 - 2,385,766 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha142,033,717 - 2,035,728 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0142,116,079 - 2,118,090 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1142,293,300 - 2,295,311 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0142,094,576 - 2,096,587 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0142,458,894 - 2,460,905 (+)NCBIUU_Cfam_GSD_1.0
LOC101973789
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721389,468,924 - 89,470,001 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936878152,727 - 153,738 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100517216
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1254,214,539 - 54,215,450 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.238,353,272 - 8,354,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Or14c39
353 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENSMUST00000080165
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
1301383Aem2_manti-erythrocyte autoantibody modifier 2 (mouse)Not determined76413542498135653Mouse
26884381Bzwq2_mbi-zygomatic width QTL 2, 5 week (mouse)76524974896949207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
11553865Stmm1c_mskin tumor modifier of MSM 1c (mouse)76578898699788986Mouse
11553866Stmm1d_mskin tumor modifier of MSM 1d (mouse)76578898699788986Mouse
27095937Ulnl7_mulna length 7, 10 week (mouse)76644974898349207Mouse
12801463Rta1_mretinal aging 1 (mouse)76716802789089989Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
4142319Powg_mpost-ovarectomy weight gain (mouse)Not determined7285710592582163Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
4142212Png1_mPostnatal growth 1 (mouse)Not determined7432612192394346Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
27226792Feml7_mfemur length 7, 5 week (mouse)78614920898949207Mouse

Markers in Region
UniSTS:485129  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38786,694,458 - 86,695,384UniSTSGRCm38
MGSCv37793,842,968 - 93,843,894UniSTSGRCm37
Celera784,065,756 - 84,066,682UniSTS
Cytogenetic Map7E1UniSTS
UniSTS:495618  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38786,694,413 - 86,695,433UniSTSGRCm38
MGSCv37793,842,923 - 93,843,943UniSTSGRCm37
Celera784,065,711 - 84,066,731UniSTS
Cytogenetic Map7E1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000080165   ⟹   ENSMUSP00000079060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl786,337,538 - 86,346,715 (+)Ensembl
GRCm38.p6 Ensembl786,688,330 - 86,697,507 (+)Ensembl
RefSeq Acc Id: NM_146620   ⟹   NP_666831
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39786,337,549 - 86,344,592 (+)NCBI
GRCm38786,688,341 - 86,695,384 (+)ENTREZGENE
MGSCv37793,836,851 - 93,843,894 (+)RGD
Celera784,059,830 - 84,066,682 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_666831 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAL61140 (Get FASTA)   NCBI Sequence Viewer  
  AAP70837 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000079060
  ENSMUSP00000079060.4
RefSeq Acc Id: NP_666831   ⟸   NM_146620
- UniProtKB: F8VQ84 (UniProtKB/TrEMBL),   Q7TS11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000079060   ⟸   ENSMUST00000080165
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F8VQ84-F1-model_v2 AlphaFold F8VQ84 1-308 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3030126 AgrOrtholog
Ensembl Genes ENSMUSG00000060688 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000080165 ENTREZGENE
  ENSMUST00000080165.5 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report mmu:258613 UniProtKB/TrEMBL
MGD MGI:3030126 ENTREZGENE
NCBI Gene 258613 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 14C36 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or14c39 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt F8VQ84 ENTREZGENE, UniProtKB/TrEMBL
  Q7TS11 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-23 Or14c39  olfactory receptor family 14 subfamily C member 39  Olfr292  olfactory receptor 292  Symbol and/or name updated 27372883 PROVISIONAL