Wdr47 (WD repeat domain 47) - Rat Genome Database

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Gene: Wdr47 (WD repeat domain 47) Mus musculus
Analyze
Symbol: Wdr47
Name: WD repeat domain 47
RGD ID: 1550965
MGI Page MGI
Description: Acts upstream of or within several processes, including detection of hot stimulus involved in thermoception; neuronal stem cell population maintenance; and telencephalon development. Located in several cellular components, including growth cone; microtubule; and neuronal cell body. Is expressed in several structures, including central nervous system; pancreas; respiratory system; sensory organ; and vibrissa. Orthologous to human WDR47 (WD repeat domain 47).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810073M12Rik; AA552998; mKIAA0893; nemitin; neuronal enriched MAP interacting protein; WD repeat-containing protein 47
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,498,302 - 108,553,035 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,498,595 - 108,553,035 (+)EnsemblGRCm39 Ensembl
GRCm383108,591,223 - 108,645,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,591,279 - 108,645,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,394,196 - 108,448,637 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,719,473 - 108,773,775 (+)NCBIMGSCv36mm8
Celera3110,926,074 - 110,980,507 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:22523538   PMID:28671696   PMID:29078390   PMID:30973865   PMID:32320668   PMID:32581705   PMID:34321999   PMID:34608154   PMID:36417873   PMID:38355793  


Genomics

Comparative Map Data
Wdr47
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393108,498,302 - 108,553,035 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3108,498,595 - 108,553,035 (+)EnsemblGRCm39 Ensembl
GRCm383108,591,223 - 108,645,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3108,591,279 - 108,645,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv373108,394,196 - 108,448,637 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363108,719,473 - 108,773,775 (+)NCBIMGSCv36mm8
Celera3110,926,074 - 110,980,507 (+)NCBICelera
Cytogenetic Map3F3NCBI
cM Map347.38NCBI
WDR47
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381108,970,214 - 109,042,102 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1108,970,214 - 109,042,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371109,512,836 - 109,584,724 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361109,314,359 - 109,386,258 (-)NCBINCBI36Build 36hg18NCBI36
Build 341109,224,877 - 109,296,777NCBI
Celera1107,782,247 - 107,854,996 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1107,405,708 - 107,478,125 (-)NCBIHuRef
CHM1_11109,627,778 - 109,697,851 (-)NCBICHM1_1
T2T-CHM13v2.01109,003,568 - 109,075,520 (-)NCBIT2T-CHM13v2.0
Wdr47
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82198,914,977 - 198,975,844 (+)NCBIGRCr8
mRatBN7.22196,226,757 - 196,287,739 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2196,205,238 - 196,287,739 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2203,870,632 - 203,931,344 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02201,752,528 - 201,813,311 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02196,569,499 - 196,630,285 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02211,380,894 - 211,441,817 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,381,036 - 211,441,815 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02230,852,107 - 230,914,752 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42204,159,071 - 204,236,688 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12204,146,464 - 204,198,316 (+)NCBI
Celera2188,872,989 - 188,934,368 (+)NCBICelera
Cytogenetic Map2q34NCBI
Wdr47
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543512,414,600 - 12,466,040 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543512,414,964 - 12,479,883 (-)NCBIChiLan1.0ChiLan1.0
WDR47
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,260,838 - 118,333,374 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11117,421,107 - 117,493,391 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01111,347,559 - 111,419,866 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,512,346 - 110,584,165 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,512,347 - 110,584,155 (-)Ensemblpanpan1.1panPan2
WDR47
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1642,733,834 - 42,800,419 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl642,715,951 - 42,799,271 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha645,508,218 - 45,575,949 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0643,065,261 - 43,133,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl643,047,507 - 43,133,404 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1642,795,864 - 42,863,922 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0642,754,031 - 42,822,334 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0643,189,227 - 43,263,861 (+)NCBIUU_Cfam_GSD_1.0
Wdr47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505819,510,722 - 19,570,961 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936704543,196 - 603,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936704543,189 - 603,488 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR47
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4111,006,968 - 111,076,918 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14111,006,338 - 111,076,924 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24121,500,716 - 121,569,043 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR47
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12024,535,838 - 24,604,157 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2024,535,913 - 24,604,646 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603833,738,720 - 33,807,697 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr47
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247724,750,931 - 4,806,717 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247724,749,748 - 4,821,490 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr47
1900 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:911
Count of miRNA genes:545
Interacting mature miRNAs:674
Transcripts:ENSMUST00000051145, ENSMUST00000123568, ENSMUST00000124731, ENSMUST00000133453, ENSMUST00000139626, ENSMUST00000144325
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
1357599msrvh1_mmodifier of susceptibility to renal vascular hypertrophy/hyperplasia 1 (mouse)Not determined3107376936115624197Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse

Markers in Region
RH124515  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383108,644,780 - 108,644,861UniSTSGRCm38
MGSCv373108,447,698 - 108,447,779UniSTSGRCm37
Celera3110,979,568 - 110,979,649UniSTS
Cytogenetic Map3F3UniSTS
RH139348  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383108,645,269 - 108,645,378UniSTSGRCm38
MGSCv373108,448,187 - 108,448,296UniSTSGRCm37
Celera3110,980,057 - 110,980,166UniSTS
Cytogenetic Map3F3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001358053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK028113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL683823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000051145   ⟹   ENSMUSP00000057482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,498,595 - 108,553,035 (+)Ensembl
GRCm38.p6 Ensembl3108,591,279 - 108,645,719 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,526,169 - 108,531,971 (+)Ensembl
GRCm38.p6 Ensembl3108,618,853 - 108,624,655 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124731   ⟹   ENSMUSP00000143335
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,498,668 - 108,525,972 (+)Ensembl
GRCm38.p6 Ensembl3108,591,352 - 108,618,656 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,526,550 - 108,534,861 (+)Ensembl
GRCm38.p6 Ensembl3108,619,234 - 108,627,545 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,498,705 - 108,522,276 (+)Ensembl
GRCm38.p6 Ensembl3108,591,389 - 108,614,960 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,534,510 - 108,545,238 (+)Ensembl
GRCm38.p6 Ensembl3108,627,194 - 108,637,922 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3108,530,665 - 108,540,454 (+)Ensembl
GRCm38.p6 Ensembl3108,623,349 - 108,633,138 (+)Ensembl
RefSeq Acc Id: NM_001358053   ⟹   NP_001344982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,594 - 108,553,035 (+)NCBI
GRCm383108,591,278 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001358054   ⟹   NP_001344983
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,594 - 108,553,035 (+)NCBI
GRCm383108,591,278 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001358055   ⟹   NP_001344984
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,049 - 108,553,035 (+)NCBI
GRCm383108,591,733 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: NM_181400   ⟹   NP_852065
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,594 - 108,553,035 (+)NCBI
GRCm383108,591,278 - 108,645,719 (+)NCBI
MGSCv373108,394,196 - 108,448,637 (+)RGD
Celera3110,926,074 - 110,980,507 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502414   ⟹   XP_006502477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,302 - 108,553,035 (+)NCBI
GRCm383108,591,248 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502415   ⟹   XP_006502478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,302 - 108,553,035 (+)NCBI
GRCm383108,591,259 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502417   ⟹   XP_006502480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,302 - 108,553,035 (+)NCBI
GRCm383108,591,223 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240308   ⟹   XP_011238610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,070 - 108,553,035 (+)NCBI
GRCm383108,591,754 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240309   ⟹   XP_011238611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,040 - 108,553,035 (+)NCBI
GRCm383108,591,737 - 108,645,593 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240310   ⟹   XP_011238612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,302 - 108,553,035 (+)NCBI
GRCm383108,591,223 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319818   ⟹   XP_017175307
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,040 - 108,553,035 (+)NCBI
GRCm383108,591,946 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319819   ⟹   XP_017175308
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,040 - 108,553,035 (+)NCBI
GRCm383108,591,733 - 108,645,593 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252932   ⟹   XP_030108792
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,070 - 108,553,035 (+)NCBI
GRCm383108,591,754 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252933   ⟹   XP_030108793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,070 - 108,553,035 (+)NCBI
GRCm383108,591,754 - 108,645,593 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252934   ⟹   XP_030108794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,070 - 108,553,035 (+)NCBI
GRCm383108,591,754 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252935   ⟹   XP_030108795
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,070 - 108,553,035 (+)NCBI
GRCm383108,591,754 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252936   ⟹   XP_030108796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,070 - 108,553,035 (+)NCBI
GRCm383108,591,754 - 108,645,593 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252937   ⟹   XP_030108797
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,055 - 108,553,035 (+)NCBI
GRCm383108,591,754 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252938   ⟹   XP_030108798
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,040 - 108,553,035 (+)NCBI
GRCm383108,591,737 - 108,645,719 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252939   ⟹   XP_030108799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,068 - 108,545,196 (+)NCBI
GRCm383108,591,750 - 108,637,880 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163435   ⟹   XP_036019328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,070 - 108,553,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163436   ⟹   XP_036019329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,302 - 108,553,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163437   ⟹   XP_036019330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,499,040 - 108,553,035 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941418
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393108,498,302 - 108,546,055 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001344982 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344983 (Get FASTA)   NCBI Sequence Viewer  
  NP_001344984 (Get FASTA)   NCBI Sequence Viewer  
  NP_852065 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502477 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502478 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502480 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238610 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238611 (Get FASTA)   NCBI Sequence Viewer  
  XP_011238612 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175307 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175308 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108792 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108793 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108794 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108795 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108796 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108797 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108798 (Get FASTA)   NCBI Sequence Viewer  
  XP_030108799 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019328 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019329 (Get FASTA)   NCBI Sequence Viewer  
  XP_036019330 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH40337 (Get FASTA)   NCBI Sequence Viewer  
  BAC25754 (Get FASTA)   NCBI Sequence Viewer  
  BAC33033 (Get FASTA)   NCBI Sequence Viewer  
  EDL01977 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000057482
  ENSMUSP00000057482.9
  ENSMUSP00000143335.2
GenBank Protein Q8CGF6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_852065   ⟸   NM_181400
- Peptide Label: isoform 1
- UniProtKB: A2AGC7 (UniProtKB/Swiss-Prot),   Q80TP4 (UniProtKB/Swiss-Prot),   Q8CGF6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502477   ⟸   XM_006502414
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006502480   ⟸   XM_006502417
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006502478   ⟸   XM_006502415
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_011238611   ⟸   XM_011240309
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_011238610   ⟸   XM_011240308
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011238612   ⟸   XM_011240310
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017175308   ⟸   XM_017319819
- Peptide Label: isoform X13
- UniProtKB: A2AGC7 (UniProtKB/Swiss-Prot),   Q80TP4 (UniProtKB/Swiss-Prot),   Q8CGF6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175307   ⟸   XM_017319818
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: NP_001344983   ⟸   NM_001358054
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001344982   ⟸   NM_001358053
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001344984   ⟸   NM_001358055
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030108798   ⟸   XM_030252938
- Peptide Label: isoform X11
RefSeq Acc Id: XP_030108799   ⟸   XM_030252939
- Peptide Label: isoform X15
RefSeq Acc Id: XP_030108792   ⟸   XM_030252932
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108794   ⟸   XM_030252934
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030108795   ⟸   XM_030252935
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030108797   ⟸   XM_030252937
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030108793   ⟸   XM_030252933
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030108796   ⟸   XM_030252936
- Peptide Label: isoform X7
RefSeq Acc Id: ENSMUSP00000057482   ⟸   ENSMUST00000051145
RefSeq Acc Id: ENSMUSP00000143335   ⟸   ENSMUST00000124731
RefSeq Acc Id: XP_036019329   ⟸   XM_036163436
- Peptide Label: isoform X10
RefSeq Acc Id: XP_036019330   ⟸   XM_036163437
- Peptide Label: isoform X14
RefSeq Acc Id: XP_036019328   ⟸   XM_036163435
- Peptide Label: isoform X4
Protein Domains
CTLH   LisH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CGF6-F1-model_v2 AlphaFold Q8CGF6 1-920 view protein structure

Promoters
RGD ID:6834103
Promoter ID:MM_KWN:35795
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_181400,   OTTMUST00000016749,   UC008QZI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363108,393,939 - 108,394,439 (+)MPROMDB
RGD ID:6834618
Promoter ID:MM_KWN:35797
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000016751,   OTTMUST00000016752
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363108,421,351 - 108,421,851 (+)MPROMDB
RGD ID:6882092
Promoter ID:EPDNEW_M4497
Type:initiation region
Name:Wdr47_1
Description:Mus musculus WD repeat domain 47 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383108,591,360 - 108,591,420EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2139593 AgrOrtholog
Ensembl Genes ENSMUSG00000040389 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051145 ENTREZGENE
  ENSMUST00000051145.15 UniProtKB/Swiss-Prot
  ENSMUST00000124731.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CTLH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WDR47 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:99512 UniProtKB/Swiss-Prot
MGD MGI:2139593 ENTREZGENE
NCBI Gene 99512 ENTREZGENE
PANTHER PTHR19863 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 47 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LisH_TPL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdr47 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE CTLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LISH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CTLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JFW8_MOUSE UniProtKB/TrEMBL
  A2AGC7 ENTREZGENE
  Q80TP4 ENTREZGENE
  Q8C8E3_MOUSE UniProtKB/TrEMBL
  Q8CEH9_MOUSE UniProtKB/TrEMBL
  Q8CGF6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2AGC7 UniProtKB/Swiss-Prot
  Q80TP4 UniProtKB/Swiss-Prot