Golph3l (golgi phosphoprotein 3-like) - Rat Genome Database

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Gene: Golph3l (golgi phosphoprotein 3-like) Mus musculus
Analyze
Symbol: Golph3l
Name: golgi phosphoprotein 3-like
RGD ID: 1550624
MGI Page MGI
Description: Predicted to enable phosphatidylinositol-4-phosphate binding activity. Predicted to be involved in Golgi organization; Golgi vesicle transport; and positive regulation of protein secretion. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cisterna; cytosol; and trans-Golgi network. Orthologous to human GOLPH3L (golgi phosphoprotein 3 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010204I15Rik; AU015439; AW549227; C77637; GPP; GPP34R; MGC28597
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,496,280 - 95,526,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,496,245 - 95,526,553 (+)EnsemblGRCm39 Ensembl
GRCm38395,588,915 - 95,619,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,588,934 - 95,619,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,392,856 - 95,423,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,674,363 - 95,704,646 (+)NCBIMGSCv36mm8
Celera397,020,564 - 97,050,880 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21873635  
PMID:32554809  


Genomics

Comparative Map Data
Golph3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,496,280 - 95,526,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,496,245 - 95,526,553 (+)EnsemblGRCm39 Ensembl
GRCm38395,588,915 - 95,619,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,588,934 - 95,619,247 (+)EnsemblGRCm38mm10GRCm38
MGSCv37395,392,856 - 95,423,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,674,363 - 95,704,646 (+)NCBIMGSCv36mm8
Celera397,020,564 - 97,050,880 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.74NCBI
GOLPH3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,646,230 - 150,697,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,646,230 - 150,697,154 (-)EnsemblGRCh38hg38GRCh38
GRCh371150,618,706 - 150,669,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,885,330 - 148,936,257 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,431,778 - 147,482,706NCBI
Celera1123,734,457 - 123,785,433 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1121,996,544 - 122,048,138 (-)NCBIHuRef
CHM1_11152,014,434 - 152,065,394 (-)NCBICHM1_1
T2T-CHM13v2.01149,770,312 - 149,822,032 (-)NCBIT2T-CHM13v2.0
Golph3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82185,840,879 - 185,872,037 (+)NCBIGRCr8
mRatBN7.22183,151,941 - 183,183,094 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,153,301 - 183,183,083 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2190,818,181 - 190,846,933 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02188,613,698 - 188,642,408 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02183,450,708 - 183,479,459 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02197,720,259 - 197,749,060 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2197,715,761 - 197,750,115 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,210,324 - 217,236,006 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2175,684,192 - 175,712,842 (+)NCBICelera
Cytogenetic Map2q34NCBI
Golph3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413150,864 - 183,657 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955413154,696 - 183,657 (+)NCBIChiLan1.0ChiLan1.0
GOLPH3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,129,911 - 99,180,807 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1198,883,544 - 98,934,437 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01126,002,787 - 126,053,672 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,652,118 - 129,703,379 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,652,118 - 129,703,379 (-)Ensemblpanpan1.1panPan2
GOLPH3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,819,152 - 59,859,650 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,819,157 - 59,859,602 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,263,685 - 59,305,397 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,833,163 - 60,875,319 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,833,162 - 60,875,356 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,663,181 - 59,705,339 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,748,888 - 59,789,094 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,475,048 - 60,517,186 (-)NCBIUU_Cfam_GSD_1.0
Golph3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,859,696 - 21,901,507 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580890,063 - 931,951 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580890,078 - 931,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLPH3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,470,463 - 98,510,633 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,470,463 - 98,510,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,719,118 - 107,758,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GOLPH3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,581,975 - 12,631,877 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golph3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,342,520 - 18,377,653 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,342,613 - 18,378,037 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Golph3l
1020 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3326
Count of miRNA genes:599
Interacting mature miRNAs:695
Transcripts:ENSMUST00000060323, ENSMUST00000098861, ENSMUST00000176541, ENSMUST00000176674, ENSMUST00000176755, ENSMUST00000177389, ENSMUST00000177390, ENSMUST00000177399
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse

Markers in Region
AW549227  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,618,659 - 95,618,747UniSTSGRCm38
MGSCv37395,422,581 - 95,422,669UniSTSGRCm37
Celera397,050,292 - 97,050,380UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH31085.81UniSTS
AU015439  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,618,946 - 95,619,191UniSTSGRCm38
MGSCv37395,422,868 - 95,423,113UniSTSGRCm37
Celera397,050,579 - 97,050,824UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH3929.26UniSTS
RH126203  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,618,893 - 95,619,135UniSTSGRCm38
MGSCv37395,422,815 - 95,423,057UniSTSGRCm37
Celera397,050,526 - 97,050,768UniSTS
Cytogenetic Map3F2.1UniSTS
Whitehead/MRC_RH31085.81UniSTS
RH140416  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38395,619,060 - 95,619,192UniSTSGRCm38
MGSCv37395,422,982 - 95,423,114UniSTSGRCm37
Celera397,050,693 - 97,050,825UniSTS
Cytogenetic Map3F2.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_146133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC092203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC092479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY107376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY381725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000060323   ⟹   ENSMUSP00000058654
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,245 - 95,526,558 (+)Ensembl
GRCm38.p6 Ensembl395,588,934 - 95,619,247 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098861   ⟹   ENSMUSP00000096460
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,245 - 95,526,558 (+)Ensembl
GRCm38.p6 Ensembl395,588,934 - 95,619,247 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176541   ⟹   ENSMUSP00000135056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,292 - 95,526,552 (+)Ensembl
GRCm38.p6 Ensembl395,588,981 - 95,619,241 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176674   ⟹   ENSMUSP00000134885
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,280 - 95,524,875 (+)Ensembl
GRCm38.p6 Ensembl395,588,969 - 95,617,564 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176755   ⟹   ENSMUSP00000134804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,285 - 95,526,551 (+)Ensembl
GRCm38.p6 Ensembl395,588,974 - 95,619,240 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177389   ⟹   ENSMUSP00000135406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,280 - 95,526,552 (+)Ensembl
GRCm38.p6 Ensembl395,588,969 - 95,619,241 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177390   ⟹   ENSMUSP00000134799
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,245 - 95,526,553 (+)Ensembl
GRCm38.p6 Ensembl395,588,934 - 95,619,242 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177399   ⟹   ENSMUSP00000134998
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl395,496,301 - 95,524,806 (+)Ensembl
GRCm38.p6 Ensembl395,588,990 - 95,617,495 (+)Ensembl
RefSeq Acc Id: NM_001177669   ⟹   NP_001171140
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
GRCm38395,588,934 - 95,619,247 (+)NCBI
MGSCv37395,392,856 - 95,423,169 (+)RGD
Celera397,020,564 - 97,050,880 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177670   ⟹   NP_001171141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
GRCm38395,588,934 - 95,619,247 (+)NCBI
MGSCv37395,392,856 - 95,423,169 (+)RGD
Celera397,020,564 - 97,050,880 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001404119   ⟹   NP_001391048
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
RefSeq Acc Id: NM_001404120   ⟹   NP_001391049
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
RefSeq Acc Id: NM_001404121   ⟹   NP_001391050
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
RefSeq Acc Id: NM_001404122   ⟹   NP_001391051
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
RefSeq Acc Id: NM_001404123   ⟹   NP_001391052
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
RefSeq Acc Id: NM_146133   ⟹   NP_666245
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
GRCm38395,588,934 - 95,619,247 (+)NCBI
MGSCv37395,392,856 - 95,423,169 (+)RGD
Celera397,020,564 - 97,050,880 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_175818
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
RefSeq Acc Id: NR_175819
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
RefSeq Acc Id: NR_175821
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39395,496,280 - 95,526,553 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_666245   ⟸   NM_146133
- Peptide Label: isoform 1
- UniProtKB: Q8R088 (UniProtKB/Swiss-Prot),   Q3TIX2 (UniProtKB/Swiss-Prot),   Q3TV24 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171140   ⟸   NM_001177669
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001171141   ⟸   NM_001177670
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: ENSMUSP00000096460   ⟸   ENSMUST00000098861
RefSeq Acc Id: ENSMUSP00000135406   ⟸   ENSMUST00000177389
RefSeq Acc Id: ENSMUSP00000134799   ⟸   ENSMUST00000177390
RefSeq Acc Id: ENSMUSP00000134998   ⟸   ENSMUST00000177399
RefSeq Acc Id: ENSMUSP00000058654   ⟸   ENSMUST00000060323
RefSeq Acc Id: ENSMUSP00000134804   ⟸   ENSMUST00000176755
RefSeq Acc Id: ENSMUSP00000135056   ⟸   ENSMUST00000176541
RefSeq Acc Id: ENSMUSP00000134885   ⟸   ENSMUST00000176674
RefSeq Acc Id: NP_001391049   ⟸   NM_001404120
- Peptide Label: isoform 1
- UniProtKB: Q8R088 (UniProtKB/Swiss-Prot),   Q3TIX2 (UniProtKB/Swiss-Prot),   Q3TV24 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391051   ⟸   NM_001404122
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001391052   ⟸   NM_001404123
- Peptide Label: isoform 6
- UniProtKB: H3BJN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001391050   ⟸   NM_001404121
- Peptide Label: isoform 4
- UniProtKB: H3BJ82 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001391048   ⟸   NM_001404119
- Peptide Label: isoform 1
- UniProtKB: Q8R088 (UniProtKB/Swiss-Prot),   Q3TIX2 (UniProtKB/Swiss-Prot),   Q3TV24 (UniProtKB/Swiss-Prot)
Protein Domains
Orange

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R088-F1-model_v2 AlphaFold Q8R088 1-285 view protein structure

Promoters
RGD ID:6833906
Promoter ID:MM_KWN:35310
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:NM_146133,   UC008QKE.1,   UC008QKF.1,   UC008QKH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36395,392,596 - 95,393,096 (+)MPROMDB
RGD ID:6881598
Promoter ID:EPDNEW_M4250
Type:initiation region
Name:Golph3l_1
Description:Mus musculus golgi phosphoprotein 3-like , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38395,588,969 - 95,589,029EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917129 AgrOrtholog
Ensembl Genes ENSMUSG00000046519 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000176541 ENTREZGENE
  ENSMUST00000176541.2 UniProtKB/TrEMBL
  ENSMUST00000176674 ENTREZGENE
  ENSMUST00000176674.8 UniProtKB/TrEMBL
  ENSMUST00000176755 ENTREZGENE
  ENSMUST00000176755.8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUST00000177389 ENTREZGENE
  ENSMUST00000177389.8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUST00000177390 ENTREZGENE
  ENSMUST00000177390.8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSMUST00000177399.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3630.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GPP34-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPP34-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Orange_dom UniProtKB/TrEMBL
KEGG Report mmu:229593 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1917129 ENTREZGENE
NCBI Gene 229593 ENTREZGENE
PANTHER GOLGI PHOSPHOPROTEIN 3-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12704 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GPP34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Golph3l PhenoGen
PROSITE ORANGE UniProtKB/TrEMBL
UniProt GLP3L_MOUSE UniProtKB/Swiss-Prot
  H3BJ07_MOUSE UniProtKB/TrEMBL
  H3BJ12_MOUSE UniProtKB/TrEMBL
  H3BJ82 ENTREZGENE, UniProtKB/TrEMBL
  H3BJI3_MOUSE UniProtKB/TrEMBL
  H3BJN5 ENTREZGENE, UniProtKB/TrEMBL
  H3BKI7_MOUSE UniProtKB/TrEMBL
  Q3TIX2 ENTREZGENE
  Q3TV24 ENTREZGENE
  Q8R088 ENTREZGENE
UniProt Secondary Q3TIX2 UniProtKB/Swiss-Prot
  Q3TV24 UniProtKB/Swiss-Prot