Rps6kc1 (ribosomal protein S6 kinase polypeptide 1) - Rat Genome Database

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Gene: Rps6kc1 (ribosomal protein S6 kinase polypeptide 1) Mus musculus
Analyze
Symbol: Rps6kc1
Name: ribosomal protein S6 kinase polypeptide 1
RGD ID: 1550524
MGI Page MGI
Description: Predicted to enable ATP binding activity; phosphatidylinositol binding activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within phosphorylation. Is active in postsynaptic density. Is expressed in olfactory epithelium and vomeronasal organ. Orthologous to human RPS6KC1 (ribosomal protein S6 kinase C1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 52 kDa ribosomal protein S6 kinase; AA682037; B130003F20Rik; C80612; ribosomal protein S6 kinase delta-1; ribosomal protein S6 kinase, 52kDa, polypeptide 1; RPK1; RPK118; S6K-delta-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,505,076 - 190,645,207 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,432,399 - 190,643,967 (-)EnsemblGRCm39 Ensembl
GRCm381190,772,879 - 190,913,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1190,700,202 - 190,911,770 (-)EnsemblGRCm38mm10GRCm38
MGSCv371192,596,758 - 192,735,649 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,496,684 - 192,612,385 (-)NCBIMGSCv36mm8
Celera1197,692,126 - 197,832,214 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
early endosome  (IBA,ISO)
endosome  (ISO)
lysosome  (ISO)
membrane  (IEA)
postsynaptic density  (EXP,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:25211037   PMID:31040226   PMID:36417873  


Genomics

Comparative Map Data
Rps6kc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,505,076 - 190,645,207 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,432,399 - 190,643,967 (-)EnsemblGRCm39 Ensembl
GRCm381190,772,879 - 190,913,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1190,700,202 - 190,911,770 (-)EnsemblGRCm38mm10GRCm38
MGSCv371192,596,758 - 192,735,649 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,496,684 - 192,612,385 (-)NCBIMGSCv36mm8
Celera1197,692,126 - 197,832,214 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.2NCBI
RPS6KC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381213,051,241 - 213,862,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1213,051,233 - 213,274,774 (+)EnsemblGRCh38hg38GRCh38
GRCh371213,224,583 - 213,448,117 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361211,291,220 - 211,513,431 (+)NCBINCBI36Build 36hg18NCBI36
Build 341209,612,991 - 209,835,202NCBI
Celera1186,446,090 - 186,668,258 (+)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,899,388 - 184,120,831 (+)NCBIHuRef
CHM1_11214,496,914 - 214,719,164 (+)NCBICHM1_1
T2T-CHM13v2.01212,294,330 - 213,102,289 (+)NCBIT2T-CHM13v2.0
Rps6kc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813104,877,296 - 105,021,490 (-)NCBIGRCr8
mRatBN7.213102,346,160 - 102,491,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,346,160 - 102,490,303 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13104,866,235 - 105,010,379 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,250,216 - 106,394,359 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013103,465,218 - 103,609,348 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013109,338,761 - 109,589,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,338,762 - 109,483,891 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013113,940,375 - 114,084,609 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413106,842,538 - 106,989,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113107,032,348 - 107,186,512 (-)NCBI
Celera13101,819,362 - 101,958,886 (-)NCBICelera
Cytogenetic Map13q27NCBI
Rps6kc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554064,381,867 - 4,543,029 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554064,382,931 - 4,542,926 (-)NCBIChiLan1.0ChiLan1.0
RPS6KC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,135,620 - 36,348,922 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,100,263 - 36,313,175 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,622,154 - 188,834,327 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,479,905 - 193,689,809 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,479,905 - 193,689,809 (+)Ensemblpanpan1.1panPan2
RPS6KC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1711,152,316 - 11,329,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl711,152,328 - 11,329,244 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,726,946 - 10,904,184 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,858,720 - 11,035,857 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,858,707 - 11,035,852 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,779,585 - 10,956,362 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,883,115 - 11,060,549 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0711,006,566 - 11,183,987 (+)NCBIUU_Cfam_GSD_1.0
Rps6kc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,118,002 - 63,338,011 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557358,221 - 578,453 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936557361,071 - 578,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS6KC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,255,308 - 130,435,315 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19130,222,631 - 130,453,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,181,977 - 143,279,842 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS6KC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,298,782 - 16,510,108 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2516,297,144 - 16,510,023 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605516,787,227 - 17,004,837 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps6kc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477118,375,831 - 18,561,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps6kc1
4475 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4687
Count of miRNA genes:933
Interacting mature miRNAs:1335
Transcripts:ENSMUST00000061611, ENSMUST00000159066, ENSMUST00000159367, ENSMUST00000159624, ENSMUST00000159823, ENSMUST00000160889, ENSMUST00000160891, ENSMUST00000162500, ENSMUST00000162692
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
1300727Mptp1_mMPTP sensitivity 1 (mouse)Not determined1171632048192681050Mouse
1357732Tbbmd1_mtotal body bone mineral density 1 (mouse)Not determined1171983110195154279Mouse
11049575Lmr8b_mleishmaniasis resistance 8b (mouse)1172303451195154279Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
10043863Swrl5_mSWR lupus locus 5 (mouse)Not determined1172303451195154279Mouse
12880426V25Dq2_mvitamin D inactive form serum level QTL 2 (mouse)1172532197195154279Mouse
12880429V25Dq1_mvitamin D inactive form serum level QTL 1 (mouse)1172632197195154279Mouse
1302023Orch4_mautoimmune orchitis resistance 4 (mouse)Not determined1175211318195154279Mouse
11532690Sluc37_msusceptibility to lung cancer 37 (mouse)1175468817194111528Mouse
1357692Axtq1_manxiety QTL 1 (mouse)Not determined1180832317191851043Mouse
1357620Aaj1_manxiety in A/J 1 (mouse)Not determined1180832317191851043Mouse

Markers in Region
D1Mit462.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381190,802,070 - 190,802,270UniSTSGRCm38
MGSCv371192,625,949 - 192,626,149UniSTSGRCm37
Celera1197,721,649 - 197,721,849UniSTS
Cytogenetic Map1H6UniSTS
cM Map1107.3UniSTS
cM Map1 UniSTS
Whitehead Genetic1111.5UniSTS
Whitehead_YAC1 UniSTS
MTH1884  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381190,801,955 - 190,802,075UniSTSGRCm38
MGSCv371192,625,834 - 192,625,954UniSTSGRCm37
Celera1197,721,538 - 197,721,654UniSTS
Cytogenetic Map1H6UniSTS
cM Map1107.3UniSTS
Whitehead Genetic1111.5UniSTS
Whitehead/MRC_RH12430.63UniSTS
RH124353  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381190,773,078 - 190,773,309UniSTSGRCm38
MGSCv371192,596,957 - 192,597,188UniSTSGRCm37
Celera1197,692,325 - 197,692,556UniSTS
Cytogenetic Map1H6UniSTS
UniSTS:234304  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381190,796,938 - 190,797,029UniSTSGRCm38
MGSCv371192,620,817 - 192,620,908UniSTSGRCm37
Celera1197,716,534 - 197,716,625UniSTS
Cytogenetic Map1H6UniSTS
RH126952  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381190,772,904 - 190,773,148UniSTSGRCm38
MGSCv371192,596,783 - 192,597,027UniSTSGRCm37
Celera1197,692,151 - 197,692,395UniSTS
Cytogenetic Map1H6UniSTS
Whitehead/MRC_RH12430.63UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_178775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC137146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB619353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG079911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ045347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000061611   ⟹   ENSMUSP00000061769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,505,076 - 190,643,967 (-)Ensembl
GRCm38.p6 Ensembl1190,772,879 - 190,911,770 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159066   ⟹   ENSMUSP00000124558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,617,573 - 190,643,966 (-)Ensembl
GRCm38.p6 Ensembl1190,885,376 - 190,911,769 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159367   ⟹   ENSMUSP00000124383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,505,076 - 190,643,935 (-)Ensembl
GRCm38.p6 Ensembl1190,772,879 - 190,911,738 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159624   ⟹   ENSMUSP00000125010
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,432,399 - 190,643,944 (-)Ensembl
GRCm38.p6 Ensembl1190,700,202 - 190,911,747 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,528,266 - 190,576,781 (-)Ensembl
GRCm38.p6 Ensembl1190,796,069 - 190,844,584 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160889   ⟹   ENSMUSP00000123733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,505,076 - 190,566,233 (-)Ensembl
GRCm38.p6 Ensembl1190,772,879 - 190,834,036 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,541,085 - 190,542,660 (-)Ensembl
GRCm38.p6 Ensembl1190,808,888 - 190,810,463 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162500
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,530,645 - 190,643,931 (-)Ensembl
GRCm38.p6 Ensembl1190,798,448 - 190,911,734 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162692
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1190,604,127 - 190,631,914 (-)Ensembl
GRCm38.p6 Ensembl1190,871,930 - 190,899,717 (-)Ensembl
RefSeq Acc Id: NM_178775   ⟹   NP_848890
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,643,967 (-)NCBI
GRCm381190,772,879 - 190,911,770 (-)NCBI
MGSCv371192,596,758 - 192,735,649 (-)RGD
Celera1197,692,126 - 197,832,214 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497172   ⟹   XP_006497235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,645,207 (-)NCBI
GRCm381190,772,879 - 190,913,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497173   ⟹   XP_006497236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,645,207 (-)NCBI
GRCm381190,772,879 - 190,913,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497174   ⟹   XP_006497237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,645,207 (-)NCBI
GRCm381190,772,879 - 190,913,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006497175   ⟹   XP_006497238
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,645,207 (-)NCBI
GRCm381190,772,879 - 190,913,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238921   ⟹   XP_011237223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,643,785 (-)NCBI
GRCm381190,772,879 - 190,905,118 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254961   ⟹   XP_030110821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,645,207 (-)NCBI
GRCm381190,772,879 - 190,913,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254962   ⟹   XP_030110822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,645,207 (-)NCBI
GRCm381190,772,879 - 190,913,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165697   ⟹   XP_036021590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,637,243 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036165698   ⟹   XP_036021591
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,576,799 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942884
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391190,505,076 - 190,645,207 (-)NCBI
Sequence:
RefSeq Acc Id: NP_848890   ⟸   NM_178775
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   E9QMX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006497238   ⟸   XM_006497175
- Peptide Label: isoform X4
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497236   ⟸   XM_006497173
- Peptide Label: isoform X2
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497235   ⟸   XM_006497172
- Peptide Label: isoform X1
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006497237   ⟸   XM_006497174
- Peptide Label: isoform X3
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011237223   ⟸   XM_011238921
- Peptide Label: isoform X5
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030110822   ⟸   XM_030254962
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030110821   ⟸   XM_030254961
- Peptide Label: isoform X5
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000124558   ⟸   ENSMUST00000159066
RefSeq Acc Id: ENSMUSP00000124383   ⟸   ENSMUST00000159367
RefSeq Acc Id: ENSMUSP00000125010   ⟸   ENSMUST00000159624
RefSeq Acc Id: ENSMUSP00000123733   ⟸   ENSMUST00000160889
RefSeq Acc Id: ENSMUSP00000061769   ⟸   ENSMUST00000061611
RefSeq Acc Id: XP_036021590   ⟸   XM_036165697
- Peptide Label: isoform X5
- UniProtKB: Q8BX49 (UniProtKB/Swiss-Prot),   Q8BMQ5 (UniProtKB/Swiss-Prot),   Q8BLK9 (UniProtKB/Swiss-Prot),   Q6PDY4 (UniProtKB/Swiss-Prot),   Q3UDY3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036021591   ⟸   XM_036165698
- Peptide Label: isoform X7
Protein Domains
MIT   Protein kinase   PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BLK9-F1-model_v2 AlphaFold Q8BLK9 1-1056 view protein structure

Promoters
RGD ID:6876078
Promoter ID:EPDNEW_M1490
Type:initiation region
Name:Rps6kc1_1
Description:Mus musculus ribosomal protein S6 kinase polypeptide 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381190,911,755 - 190,911,815EPDNEW
RGD ID:6818419
Promoter ID:MM_KWN:3287
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000056178,   ENSMUST00000061611,   ENSMUST00000097440,   NM_178775,   UC007EBI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361192,735,379 - 192,735,879 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443419 AgrOrtholog
Ensembl Genes ENSMUSG00000037581
  ENSMUSG00000089872 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000061611 ENTREZGENE
  ENSMUST00000061611.15 UniProtKB/TrEMBL
  ENSMUST00000159066.2 UniProtKB/TrEMBL
  ENSMUST00000159367.8 UniProtKB/TrEMBL
  ENSMUST00000159624.8 UniProtKB/Swiss-Prot
  ENSMUST00000160889.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIT_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PX_S6K-delta-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STK_RPK118-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:320119 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2443419 ENTREZGENE
NCBI Gene 320119 ENTREZGENE
PANTHER RIBOSOMAL PROTEIN S6 KINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN S6 KINASE DELTA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pkinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps6kc1 PhenoGen
PROSITE PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MIT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_TKc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00312 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF116846 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF64268 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E0CY13_MOUSE UniProtKB/TrEMBL
  E0CYA1_MOUSE UniProtKB/TrEMBL
  E9QMX4 ENTREZGENE, UniProtKB/TrEMBL
  F6VA16_MOUSE UniProtKB/TrEMBL
  KS6C1_MOUSE UniProtKB/Swiss-Prot
  Q3UDY3 ENTREZGENE
  Q6PDY4 ENTREZGENE
  Q8BLK9 ENTREZGENE
  Q8BMQ5 ENTREZGENE
  Q8BX49 ENTREZGENE
UniProt Secondary Q3UDY3 UniProtKB/Swiss-Prot
  Q6PDY4 UniProtKB/Swiss-Prot
  Q8BMQ5 UniProtKB/Swiss-Prot
  Q8BX49 UniProtKB/Swiss-Prot