Gm22572 (predicted gene, 22572) - Rat Genome Database

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Gene: Gm22572 (predicted gene, 22572) Mus musculus
Analyze
Symbol: Gm22572
Name: predicted gene, 22572
RGD ID: 15002391
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,098,635 - 25,098,739 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,098,635 - 25,098,739 (+)EnsemblGRCm39 Ensembl
GRCm38225,208,623 - 25,208,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,208,623 - 25,208,727 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22572
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,098,635 - 25,098,739 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,098,635 - 25,098,739 (+)EnsemblGRCm39 Ensembl
GRCm38225,208,623 - 25,208,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,208,623 - 25,208,727 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
RNU6-977P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381283,021,890 - 83,021,992 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1283,021,890 - 83,021,992 (+)EnsemblGRCh38hg38GRCh38
GRCh371283,415,669 - 83,415,771 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q21.31NCBI
CHM1_11283,381,198 - 83,381,300 (+)NCBICHM1_1
T2T-CHM13v2.01283,001,575 - 83,001,677 (+)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm22572
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:25
Interacting mature miRNAs:29
Transcripts:ENSMUST00000082985
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004941144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000082985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl225,098,635 - 25,098,739 (+)Ensembl
GRCm38.p6 Ensembl225,208,623 - 25,208,727 (+)Ensembl
RefSeq Acc Id: XR_004941144
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,098,635 - 25,098,739 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000064919 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000082985 ENTREZGENE
MGD MGI:5452349 ENTREZGENE
NCBI Gene Gm22572 ENTREZGENE
PhenoGen Gm22572 PhenoGen