RNU6-977P (RNA, U6 small nuclear 977, pseudogene) - Rat Genome Database

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Gene: RNU6-977P (RNA, U6 small nuclear 977, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-977P
Name: RNA, U6 small nuclear 977, pseudogene
RGD ID: 10413521
HGNC Page HGNC:47940
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381283,021,890 - 83,021,992 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1283,021,890 - 83,021,992 (+)EnsemblGRCh38hg38GRCh38
GRCh371283,415,669 - 83,415,771 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q21.31NCBI
CHM1_11283,381,198 - 83,381,300 (+)NCBICHM1_1
T2T-CHM13v2.01283,001,575 - 83,001,677 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-977P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381283,021,890 - 83,021,992 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1283,021,890 - 83,021,992 (+)EnsemblGRCh38hg38GRCh38
GRCh371283,415,669 - 83,415,771 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q21.31NCBI
CHM1_11283,381,198 - 83,381,300 (+)NCBICHM1_1
T2T-CHM13v2.01283,001,575 - 83,001,677 (+)NCBIT2T-CHM13v2.0
Gm22572
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,098,635 - 25,098,739 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,098,635 - 25,098,739 (+)EnsemblGRCm39 Ensembl
GRCm38225,208,623 - 25,208,727 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,208,623 - 25,208,727 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map2A3NCBI
LOC119871692
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha470,961,303 - 70,961,400 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0471,860,724 - 71,860,821 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl471,860,724 - 71,860,821 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1471,608,554 - 71,608,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0471,728,501 - 71,728,598 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0472,261,541 - 72,261,638 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:64
Interacting mature miRNAs:66
Transcripts:ENST00000516411
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2
Low 25 5 16 3 37 2 40 7 42 27 44 36 1 3 11
Below cutoff 44 8 19 5 27 2 52 16 106 22 39 44 4 13 24 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516411
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1283,021,890 - 83,021,992 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-977P COSMIC
Ensembl Genes ENSG00000252220 Ensembl, ENTREZGENE
GTEx ENSG00000252220 GTEx
HGNC ID HGNC:47940 ENTREZGENE
Human Proteome Map RNU6-977P Human Proteome Map
NCBI Gene RNU6-977P ENTREZGENE