Gm24635 (predicted gene, 24635) - Rat Genome Database

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Gene: Gm24635 (predicted gene, 24635) Mus musculus
Analyze
Symbol: Gm24635
Name: predicted gene, 24635
RGD ID: 15000568
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Dog
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391380,306,782 - 80,306,917 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1380,306,782 - 80,306,909 (+)EnsemblGRCm39 Ensembl
GRCm381380,158,663 - 80,158,798 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1380,158,663 - 80,158,790 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map13C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm24635
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391380,306,782 - 80,306,917 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1380,306,782 - 80,306,909 (+)EnsemblGRCm39 Ensembl
GRCm381380,158,663 - 80,158,798 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1380,158,663 - 80,158,790 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map13C2NCBI
RNU4-89P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,747,192 - 196,747,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,747,192 - 196,747,324 (-)EnsemblGRCh38hg38GRCh38
GRCh373196,474,063 - 196,474,195 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q29NCBI
CHM1_13196,445,294 - 196,445,426 (-)NCBICHM1_1
T2T-CHM13v2.03199,466,573 - 199,466,705 (-)NCBIT2T-CHM13v2.0
LOC120096437
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81365,715,241 - 65,715,386 (-)NCBIGRCr8
mRatBN7.21363,165,284 - 63,165,394 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,165,284 - 63,165,394 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1363,165,284 - 63,165,394 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1368,441,005 - 68,441,115 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map13q21NCBI
LOC119869949
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha141,591,216 - 41,591,422 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0140,934,743 - 40,934,949 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl140,934,743 - 40,934,949 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1140,810,433 - 40,810,639 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0140,654,196 - 40,654,402 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0141,157,793 - 41,157,999 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm24635
13 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSMUST00000122712
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
1301610Dps1_mdelta power in slow-wave sleep 1 (mouse)Not determined137719586295730894Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
12880402Emlq1_memotional learning QTL 1 (mouse)137810885896866553Mouse
12879495Fexq1_mfear expression QTL 1 (mouse)137826885895836553Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004938312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CT573085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000122712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1380,306,782 - 80,306,909 (+)Ensembl
GRCm38.p6 Ensembl1380,158,663 - 80,158,790 (+)Ensembl
RefSeq Acc Id: XR_004938312
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391380,306,782 - 80,306,917 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084661 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000122712 ENTREZGENE
MGD MGI:5454412 ENTREZGENE
NCBI Gene Gm24635 ENTREZGENE
PhenoGen Gm24635 PhenoGen