RNU4-89P (RNA, U4 small nuclear 89, pseudogene) - Rat Genome Database

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Gene: RNU4-89P (RNA, U4 small nuclear 89, pseudogene) Homo sapiens
Analyze
Symbol: RNU4-89P
Name: RNA, U4 small nuclear 89, pseudogene
RGD ID: 10399579
HGNC Page HGNC:47025
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU4-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,747,192 - 196,747,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,747,192 - 196,747,324 (-)EnsemblGRCh38hg38GRCh38
GRCh373196,474,063 - 196,474,195 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q29NCBI
CHM1_13196,445,294 - 196,445,426 (-)NCBICHM1_1
T2T-CHM13v2.03199,466,573 - 199,466,705 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU4-89P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383196,747,192 - 196,747,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3196,747,192 - 196,747,324 (-)EnsemblGRCh38hg38GRCh38
GRCh373196,474,063 - 196,474,195 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q29NCBI
CHM1_13196,445,294 - 196,445,426 (-)NCBICHM1_1
T2T-CHM13v2.03199,466,573 - 199,466,705 (-)NCBIT2T-CHM13v2.0
Gm24635
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391380,306,782 - 80,306,917 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1380,306,782 - 80,306,909 (+)EnsemblGRCm39 Ensembl
GRCm381380,158,663 - 80,158,798 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1380,158,663 - 80,158,790 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map13C2NCBI
LOC120098422
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81866,071,718 - 66,071,796 (+)NCBIGRCr8
mRatBN7.21863,796,336 - 63,796,423 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1863,796,336 - 63,796,423 (+)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1863,796,336 - 63,796,423 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1868,683,893 - 68,683,980 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map18q12.1NCBI
LOC119874368
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1243,678,559 - 43,678,677 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01244,632,682 - 44,632,800 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1244,632,682 - 44,632,800 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11243,971,732 - 43,971,850 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01243,904,963 - 43,905,081 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01244,082,265 - 44,082,383 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:27
Interacting mature miRNAs:27
Transcripts:ENST00000607443
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 35 2 2 1
Low 409 370 289 126 502 91 862 178 404 130 409 467 40 206 464 1
Below cutoff 631 706 402 141 306 85 1018 466 702 60 316 323 56 315 647

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000607443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3196,747,192 - 196,747,324 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU4-89P COSMIC
Ensembl Genes ENSG00000272359 Ensembl, ENTREZGENE
GTEx ENSG00000272359 GTEx
HGNC ID HGNC:47025 ENTREZGENE
Human Proteome Map RNU4-89P Human Proteome Map
NCBI Gene RNU4-89P ENTREZGENE