Gm22845 (predicted gene, 22845) - Rat Genome Database

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Gene: Gm22845 (predicted gene, 22845) Mus musculus
Analyze
Symbol: Gm22845
Name: predicted gene, 22845
RGD ID: 14996951
MGI Page MGI
Description:
Type: snrna
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39129,915,347 - 9,915,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl129,915,347 - 9,915,450 (-)EnsemblGRCm39 Ensembl
GRCm38129,865,347 - 9,865,450 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl129,865,347 - 9,865,450 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12A1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gm22845
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39129,915,347 - 9,915,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl129,915,347 - 9,915,450 (-)EnsemblGRCm39 Ensembl
GRCm38129,865,347 - 9,865,450 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl129,865,347 - 9,865,450 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12A1.1NCBI
RNU6-500P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,362,134 - 173,362,240 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,362,134 - 173,362,240 (-)EnsemblGRCh38hg38GRCh38
GRCh375172,789,137 - 172,789,243 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q35.2NCBI
CHM1_15172,221,546 - 172,221,652 (-)NCBICHM1_1
T2T-CHM13v2.05173,902,196 - 173,902,302 (-)NCBIT2T-CHM13v2.0
LOC119865791
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2418,787,655 - 18,787,759 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02419,416,131 - 19,416,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,416,131 - 19,416,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,972,603 - 18,972,707 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02419,083,149 - 19,083,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,411,781 - 19,411,885 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Gm22845
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:23
Interacting mature miRNAs:23
Transcripts:ENSMUST00000157712
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039525Tbbr2_mTrypanosoma brucei brucei response 2 (mouse)12122418579Mouse
1301393Dyscalc3_mdystrophic cardiac calcinosis 3 (mouse)Not determined12122418579Mouse
10402496Lmr22_mleishmaniasis resistance 22 (mouse)Not determined12122418579Mouse
1301143Skull17_mskull morphology 17 (mouse)Not determined12122418579Mouse
1357519Vtbt12_mvertebral trabecular bone trait 12 (mouse)Not determined12124662697Mouse
1301655Bmd12_mbone mineral density 12 (mouse)Not determined12124662697Mouse
4141296Femwf9_mfemur work to failure 9 (mouse)Not determined127920733Mouse
4141436Chldq7_mcholesterol and HDL QTL 7 (mouse)Not determined12127920733Mouse
12910983Pifs1_mpeptide-induced fatal syndrome 1 (mouse)12130433078Mouse
1301925Ath6_matherosclerosis 6 (mouse)Not determined12132758756Mouse
1301207Circp1_mcircadian photosensitivity 1 (mouse)Not determined12133430339Mouse
4141660Nbwa1_mNZB and NZW autoimmunity 1 (mouse)Not determined1234013434340302Mouse
26884410Bzwq15_mbi-zygomatic width QTL 15, 16 week (mouse)12365000029749999Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301163Eae16_msusceptibility to experimental allergic encephalomyelitis 16 (mouse)Not determined12772315841723301Mouse
13208568Bmiq11_mbody mass index QTL 11 (mouse)12805000040049999Mouse
25394547Skmw75_mskeletal muscle weight 75, gastroc (mouse)12821257610451853Mouse
1301037Cd4ts5_mCD4 T cell subset 5 (mouse)Not determined12835244442352581Mouse
1301723Fcsa7_mfemoral cross-sectional area 7 (mouse)Not determined12949100443491112Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_004937829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000157712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl129,915,347 - 9,915,450 (-)Ensembl
GRCm38.p6 Ensembl129,865,347 - 9,865,450 (-)Ensembl
RefSeq Acc Id: XR_004937829
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39129,915,347 - 9,915,450 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000088337 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000157712 ENTREZGENE
MGD MGI:5452622 ENTREZGENE
NCBI Gene Gm22845 ENTREZGENE
PhenoGen Gm22845 PhenoGen