RNU6-500P (RNA, U6 small nuclear 500, pseudogene) - Rat Genome Database

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Gene: RNU6-500P (RNA, U6 small nuclear 500, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-500P
Name: RNA, U6 small nuclear 500, pseudogene
RGD ID: 10413310
HGNC Page HGNC:47463
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,362,134 - 173,362,240 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,362,134 - 173,362,240 (-)EnsemblGRCh38hg38GRCh38
GRCh375172,789,137 - 172,789,243 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q35.2NCBI
CHM1_15172,221,546 - 172,221,652 (-)NCBICHM1_1
T2T-CHM13v2.05173,902,196 - 173,902,302 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-500P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,362,134 - 173,362,240 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,362,134 - 173,362,240 (-)EnsemblGRCh38hg38GRCh38
GRCh375172,789,137 - 172,789,243 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q35.2NCBI
CHM1_15172,221,546 - 172,221,652 (-)NCBICHM1_1
T2T-CHM13v2.05173,902,196 - 173,902,302 (-)NCBIT2T-CHM13v2.0
Gm22845
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39129,915,347 - 9,915,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl129,915,347 - 9,915,450 (-)EnsemblGRCm39 Ensembl
GRCm38129,865,347 - 9,865,450 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl129,865,347 - 9,865,450 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map12A1.1NCBI
LOC119865791
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2418,787,655 - 18,787,759 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02419,416,131 - 19,416,235 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,416,131 - 19,416,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,972,603 - 18,972,707 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02419,083,149 - 19,083,253 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,411,781 - 19,411,885 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:183
Count of miRNA genes:170
Interacting mature miRNAs:171
Transcripts:ENST00000362349
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 3 1 3 1
Below cutoff 3 8 1 4 11 1 5 2 3 1 1 7

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000362349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5173,362,134 - 173,362,240 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-500P COSMIC
Ensembl Genes ENSG00000199219 Ensembl, ENTREZGENE
GTEx ENSG00000199219 GTEx
HGNC ID HGNC:47463 ENTREZGENE
Human Proteome Map RNU6-500P Human Proteome Map
NCBI Gene RNU6-500P ENTREZGENE