CD1D (CD1d molecule) - Rat Genome Database

Name: CD1D
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CD1D (CD1d molecule) Sus scrofa

Analyze

Symbol:

CD1D

Name:

CD1d molecule

RGD ID:

14284911

Description:

ENCODES a protein that exhibits cell adhesion molecule binding (inferred); endogenous lipid antigen binding (inferred); exogenous lipid antigen binding (inferred); INVOLVED IN antigen processing and presentation, endogenous lipid antigen via MHC class Ib (inferred); antigen processing and presentation, exogenous lipid antigen via MHC class Ib (inferred); immune response (inferred); ASSOCIATED WITH Chronic Hepatitis B (ortholog); dengue hemorrhagic fever (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cell surface (inferred); cytoplasm (inferred); endoplasmic reticulum (inferred)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

antigen-presenting glycoprotein CD1d; CD1; CD1 protein; CD1D antigen

RGD Orthologs

Human

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	92,094,700 - 92,101,095 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	92,096,670 - 92,101,177 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	100,437,380 - 100,442,082 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chronic Hepatitis B (ISO)

dengue hemorrhagic fever (ISO)

gastrointestinal stromal tumor (ISO)

Helicobacter Infections (ISO)

parathyroid carcinoma (ISO)

pulmonary tuberculosis (ISO)

stomach cancer (ISO)

urinary schistosomiasis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation, endogenous lipid antigen via MHC class Ib (IEA)

antigen processing and presentation, exogenous lipid antigen via MHC class Ib (IEA)

immune response (IEA)

innate immune response (IEA)

positive regulation of T cell mediated cytotoxicity (IEA)

positive regulation of T cell proliferation (IEA)

Cellular Component

cell surface (IEA)

cytoplasm (IEA)

endoplasmic reticulum (IEA)

external side of plasma membrane (IEA)

extracellular space (IEA)

lysosome (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

cell adhesion molecule binding (IEA)

endogenous lipid antigen binding (IEA)

exogenous lipid antigen binding (IEA)

histone binding (IEA)

lipid antigen binding (IEA)

lipopeptide binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:9925939	PMID:14681463	PMID:17112699	PMID:17145712	PMID:17407547	PMID:30032202

Genomics

Comparative Map Data

CD1D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	92,094,700 - 92,101,095 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	92,096,670 - 92,101,177 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	100,437,380 - 100,442,082 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD1D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	158,178,030 - 158,186,427 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	158,178,030 - 158,186,427 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	158,147,820 - 158,156,217 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	156,416,361 - 156,422,841 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	154,962,809 - 154,967,758	NCBI
Celera	1	131,220,809 - 131,227,289 (+)	NCBI		Celera
Cytogenetic Map	1	q23.1	NCBI
HuRef	1	129,508,011 - 129,514,491 (+)	NCBI		HuRef
CHM1_1	1	159,546,145 - 159,552,625 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	157,297,517 - 157,323,522 (+)	NCBI		T2T-CHM13v2.0

Variants

Variants in CD1D
116 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001102680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005663236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB189911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB221036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB221037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ007717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK238636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK238943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK352027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK394569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU570749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EW639476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01130527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000007067 ⟹ ENSSSCP00000006876

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	92,094,700 - 92,101,095 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000105460 ⟹ ENSSSCP00000080702

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	92,094,700 - 92,101,083 (-)	Ensembl

RefSeq Acc Id:

NM_001102680 ⟹ NP_001096150

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	92,096,672 - 92,101,125 (-)	NCBI

Sequence:

show sequence

GAATCAAAGTCGGAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTGTGT
TGCTCTGGGGGCTCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATTCCCTTCC
AGCCTCGCCGAGGTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAACAGCAGCTGG
ACACGCACGGATGGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTTGGCGCAATGACTCGG
ACACCATCGTCTTCCTGAAGCCCTGGTCCCAGGGCACACTGAGCGACCAGCTGGCGAATCAGCT
GCAGCATATATTTAAGGGTTATCGCAGCAGCTTCACCAGGGACATAAGGGAATTCGTCAAGATG
CTGGGCAGCGACTACCCCTTTGAGATCCAGATATCTGCTGGATGTGAGGTGCTTTCGGGGAACA
GCTCAGAAAGCTTCCTCCACTCAGCATTTCAAGGAACAGACATCATGAGTTTCCAAGGAACTTC
TTGGGTGTCAGCTCCAGATGCTCCACCTTGGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGAC
CAGGGAACCAAGGAAACGGTGCAGTGGCTCCTCTACGACATCTGCCCCCAATTTGTCAGAGGCG
TCCTGGAGACAGGGAAGTCGGAGCTGGAGAAGCAAGTGAAGCCTGAAGCTTGGCTGTCCAGTGG
CCCCACTCCTGGACCTGGCCGTCTGCTGCTCGTCTGCCACGTCTCAGGATTCTACCCCAAACCC
GTGTGGGTGATGTGGATGCGGGGTGAGCAGGAGCAGCCTGGCACTCAGCAAGGTGACATCCTCC
CCCATGCAGACGGGACGTGGTATCTCCGAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGG
CTTGAGTTGCCGAGTGAAGCACAGCAGCCTAGGAGACCAGGACATCATCCTTTACTGGGACCAC
AGTCATGTCTTGGTGATCGTCTTGTCAGTACTGGCTTTCATCCTTGTGCTCGGTGGAAGCTTCG
CCTTCTGGTTTAGGAGGCGCCGTGTCTATCAAAACATCCAGTGACTGTTCTTACCATATCCCGT
CTATGTGGACCTCAAGATCTTAGGGTTTTGGTGCTCAGAATTCGGCAGTGAAAGAGAGCTACCT
TGAAGAAGCAGAGGACAAGCATAAAGCAGCTCTTGTCACATCCTTTGAACATGTTATCTAAGAG
GATTCAAGTTCTTTTTCAGTGTACTGAAAGTTTATAAGCCCTGGCGGTTCTGTAAAAACAGATG
TGCAGACTCAGATACCTCTCAGGGACAAGCAGATGAGGGCTGAGGTGGAATTGTGTCATTTTTT
TTGTTGTTTGTTTTCTTTTGGACATCCTGTGGCATATGGAGTTCCTGGGCCAGGGATCTAATCT
GAACCACTGTTTCGACTTATGCTGCAGCTGCAGTAGTGCTGGATCCTTTTACCCACCGCACACG
GCTGGGGATCGAACCTGCCTCCTGGCACTGCAGAGACGCCACAGATCCCGTTGTGCCACATTGG
GAACTCCTATGGTTATCATTTGGACGATGGATTCTGCAGTGAACTGGAAAGCACATTTTCTGTC
CAAAGAAAACATGTCCAGCTGTTTGTTGTCAACTATCACGTAAGACCCTGGCTTGGCTGTAACC
CACATTTTTTCAAGAAAAGTGGAAATCTAGTTATATGCAAACATGCCTGATATTAATGTGTTGA
CTCAAACTTTTATAAAATATACCTCTGCCAGCTGATGGCAACCCTGGGGCTCCCAGTCTGTGTC
TCTGATATAAAAAGTTTGTCCTGAAGGACGTATTGGCAGTTTCAGGACCTCATTTCTATTGCGA
ATTTGCATTTATAAAGGGGGACATTTTCTTTTTAAAAGAAAATTAGGTTGTAAGAAACAGAGGT
GTTGAAAGCTTTGTATTTGGCGTAACTTGATTAAAAGAGGAGAAATCA

hide sequence

RefSeq Acc Id:

XM_005663234 ⟹ XP_005663291

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	92,096,670 - 92,101,177 (-)	NCBI

Sequence:

show sequence

AGGCTGTCAGAAGAGGCGTGGAGGAGGGGACGAGGGAGGGGCCCGGGGAGGAGAATCAAAGTCG
GAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTGTGTTGCTCTGGGGGC
TCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATTCCCTTCCAGCCTCGCCGAG
GTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAACAGCAGCTGGACACGCACGGAT
GGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTTGGCGCAATGACTCGGACACCATCGTCT
TCCTGAAGCCCTGGTCCCAGGGCACACTGAGCGACCAGCTGGCGAATCAGCTGCAGCATATATT
TAAGGGTTATCGCAGCAGCTTCACCAGGGACATAAGGGAATTCGTCAAGATGCTGGGCAGCGAC
TACCCCTTTGAGATCCAGATATCTGCTGGATGTGAGGTGCTTTCGGGGAACAGCTCAGAAAGCT
TCCTCCACTCAGCATTTCAAGGAACAGACATCATGAGTTTCCAAGGAACTTCTTGGGTGTCAGC
TCCAGATGCTCCACCTTGGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGACCAGGGAACCAAG
GAAACGGTGCAGTGGCTCCTCTACGACATCTGCCCCCAATTTGTCAGAGGCGTCCTGGAGACAG
GGAAGTCGGAGCTGGAGAAGCAAGTGAAGCCTGAAGCTTGGCTGTCCAGTGGCCCCACTCCTGG
ACCTGGCCGTCTGCTGCTCGTCTGCCACGTCTCAGGATTCTACCCCAAACCCGTGTGGGTGATG
TGGATGCGGGGTGAGCAGGAGCAGCCTGGCACTCAGCAAGGTGACATCCTCCCCCATGCAGACG
GGACGTGGTATCTCCGAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGGCTTGAGTTGCCG
AGTGAAGCACAGCAGCCTAGGAGACCAGGACATCATCCTTTACTGGGCAGACCACAGTCATGTC
TTGGTGATCGTCTTGTCAGTACTGGCTTTCATCCTTGTGCTCGGTGGAAGCTTCGCCTTCTGGT
TTAGGAGGCGCCGTGTCTATCAAAACATCCAGTGACTGTTCTTACCATATCCCGTCTATGTGGA
CCTCAAGATCTTAGGGTTTTGGTGCTCAGAATTCGGCAGTGAAAGAGAGCTACCTTGAAGAAGC
AGAGGACAAGCATAAAGCAGCTCTTGTCACATCCTTTGAACATGTTATCTAAGAGGATTCAAGT
TCTTTTTCAGTGTACTGAAAGTTTATAAGCCCTGGCGGTTCTGTAAAAACAGATGTGCAGACTC
AGATACCTCTCAGGGACAAGCAGATGAGGGCTGAGGTGGAATTGTGTCATTTTTTTTGTTGTTT
GTTTTCTTTTGGACATCCTGTGGCATATGGAGTTCCTGGGCCAGGGATCTAATCTGAACCACTG
TTTCGACTTATGCTGCAGCTGCAGTAGTGCTGGATCCTTTTACCCACCGCACACGGCTGGGGAT
CGAACCTGCCTCCTGGCACTGCAGAGACGCCACAGATCCCGTTGTGCCACATTGGGAACTCCTA
TGGTTATCATTTGGACGATGGATTCTGCAGTGAACTGGAAAGCACATTTTCTGTCCAAAGAAAA
CATGTCCAGCTGTTTGTTGTCAACTATCACGTAAGACCCTGGCTTGGCTGTAACCCACATTTTT
TCAAGAAAAGTGGAAATCTAGTTATATGCAAACATGCCTGATATTAATGTGTTGACTCAAACTT
TTATAAAATATACCTCTGCCAGCTGATGGCAACCCTGGGGCTCCCAGTCTGTGTCTCTGATATA
AAAAGTTTGTCCTGAAGGACGTATTGGCAGTTTCAGGACCTCATTTCTATTGCGAATTTGCATT
TATAAAGGGGGACATTTTCTTTTTAAAAGAAAATTAGGTTGTAAGAAACAGAGGTGTTGAAAGC
TTTGTATTTGGCGTAACTTGATTAAAAGAGGAGAAATCATA

hide sequence

RefSeq Acc Id:

XM_005663236 ⟹ XP_005663293

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	92,096,670 - 92,101,177 (-)	NCBI

Sequence:

show sequence

AGGCTGTCAGAAGAGGCGTGGAGGAGGGGACGAGGGAGGGGCCCGGGGAGGAGAATCAAAGTCG
GAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTGTGTTGCTCTGGGGGC
TCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATTCCCTTCCAGCCTCGCCGAG
GTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAACAGCAGCTGGACACGCACGGAT
GGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTTGGCGCAATGACTCGGACACCATCGTCT
TCCTGAAGCCCTGGTCCCAGGGCACACTGAGCGACCAGCTGGCGAATCAGCTGCAGCATATATT
TAAGGGTTATCGCAGCAGCTTCACCAGGGACATAAGGGAATTCGTCAAGATGCTGGGCAGCGAC
TCTCCAGATGCTCCACCTTGGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGACCAGGGAACCA
AGGAAACGGTGCAGTGGCTCCTCTACGACATCTGCCCCCAATTTGTCAGAGGCGTCCTGGAGAC
AGGGAAGTCGGAGCTGGAGAAGCAAGTGAAGCCTGAAGCTTGGCTGTCCAGTGGCCCCACTCCT
GGACCTGGCCGTCTGCTGCTCGTCTGCCACGTCTCAGGATTCTACCCCAAACCCGTGTGGGTGA
TGTGGATGCGGGGTGAGCAGGAGCAGCCTGGCACTCAGCAAGGTGACATCCTCCCCCATGCAGA
CGGGACGTGGTATCTCCGAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGGCTTGAGTTGC
CGAGTGAAGCACAGCAGCCTAGGAGACCAGGACATCATCCTTTACTGGGCAGACCACAGTCATG
TCTTGGTGATCGTCTTGTCAGTACTGGCTTTCATCCTTGTGCTCGGTGGAAGCTTCGCCTTCTG
GTTTAGGAGGCGCCGTGTCTATCAAAACATCCAGTGACTGTTCTTACCATATCCCGTCTATGTG
GACCTCAAGATCTTAGGGTTTTGGTGCTCAGAATTCGGCAGTGAAAGAGAGCTACCTTGAAGAA
GCAGAGGACAAGCATAAAGCAGCTCTTGTCACATCCTTTGAACATGTTATCTAAGAGGATTCAA
GTTCTTTTTCAGTGTACTGAAAGTTTATAAGCCCTGGCGGTTCTGTAAAAACAGATGTGCAGAC
TCAGATACCTCTCAGGGACAAGCAGATGAGGGCTGAGGTGGAATTGTGTCATTTTTTTTGTTGT
TTGTTTTCTTTTGGACATCCTGTGGCATATGGAGTTCCTGGGCCAGGGATCTAATCTGAACCAC
TGTTTCGACTTATGCTGCAGCTGCAGTAGTGCTGGATCCTTTTACCCACCGCACACGGCTGGGG
ATCGAACCTGCCTCCTGGCACTGCAGAGACGCCACAGATCCCGTTGTGCCACATTGGGAACTCC
TATGGTTATCATTTGGACGATGGATTCTGCAGTGAACTGGAAAGCACATTTTCTGTCCAAAGAA
AACATGTCCAGCTGTTTGTTGTCAACTATCACGTAAGACCCTGGCTTGGCTGTAACCCACATTT
TTTCAAGAAAAGTGGAAATCTAGTTATATGCAAACATGCCTGATATTAATGTGTTGACTCAAAC
TTTTATAAAATATACCTCTGCCAGCTGATGGCAACCCTGGGGCTCCCAGTCTGTGTCTCTGATA
TAAAAAGTTTGTCCTGAAGGACGTATTGGCAGTTTCAGGACCTCATTTCTATTGCGAATTTGCA
TTTATAAAGGGGGACATTTTCTTTTTAAAAGAAAATTAGGTTGTAAGAAACAGAGGTGTTGAAA
GCTTTGTATTTGGCGTAACTTGATTAAAAGAGGAGAAATCATA

hide sequence

RefSeq Acc Id:

XM_021088434 ⟹ XP_020944093

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	92,096,670 - 92,101,177 (-)	NCBI

Sequence:

show sequence

AGGCTGTCAGAAGAGGCGTGGAGGAGGGGACGAGGGAGGGGCCCGGGGAGGAGAATCAAAGTCG
GAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTGTGTTGCTCTGGGGGC
TCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATTCCCTTCCAGCCTCGCCGAG
GTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAACAGCAGCTGGACACGCACGGAT
GGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTTGGCGCAATGACTCGGACACCATCGTCT
TCCTGAAGCCCTGGTCCCAGGGCACACTGAGCGACCAGCTGGCGAATCAGCTGCAGCATATATT
TAAGGGTTATCGCAGCAGCTTCACCAGGGACATAAGGGAATTCGTCAAGATGCTGGGCAGCGAC
TCATTTCAAGGAACAGACATCATGAGTTTCCAAGGAACTTCTTGGGTGTCAGCTCCAGATGCTC
CACCTTGGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGACCAGGGAACCAAGGAAACGGTGCA
GTGGCTCCTCTACGACATCTGCCCCCAATTTGTCAGAGGCGTCCTGGAGACAGGGAAGTCGGAG
CTGGAGAAGCAAGTGAAGCCTGAAGCTTGGCTGTCCAGTGGCCCCACTCCTGGACCTGGCCGTC
TGCTGCTCGTCTGCCACGTCTCAGGATTCTACCCCAAACCCGTGTGGGTGATGTGGATGCGGGG
TGAGCAGGAGCAGCCTGGCACTCAGCAAGGTGACATCCTCCCCCATGCAGACGGGACGTGGTAT
CTCCGAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGGCTTGAGTTGCCGAGTGAAGCACA
GCAGCCTAGGAGACCAGGACATCATCCTTTACTGGGCAGACCACAGTCATGTCTTGGTGATCGT
CTTGTCAGTACTGGCTTTCATCCTTGTGCTCGGTGGAAGCTTCGCCTTCTGGTTTAGGAGGCGC
CGTGTCTATCAAAACATCCAGTGACTGTTCTTACCATATCCCGTCTATGTGGACCTCAAGATCT
TAGGGTTTTGGTGCTCAGAATTCGGCAGTGAAAGAGAGCTACCTTGAAGAAGCAGAGGACAAGC
ATAAAGCAGCTCTTGTCACATCCTTTGAACATGTTATCTAAGAGGATTCAAGTTCTTTTTCAGT
GTACTGAAAGTTTATAAGCCCTGGCGGTTCTGTAAAAACAGATGTGCAGACTCAGATACCTCTC
AGGGACAAGCAGATGAGGGCTGAGGTGGAATTGTGTCATTTTTTTTGTTGTTTGTTTTCTTTTG
GACATCCTGTGGCATATGGAGTTCCTGGGCCAGGGATCTAATCTGAACCACTGTTTCGACTTAT
GCTGCAGCTGCAGTAGTGCTGGATCCTTTTACCCACCGCACACGGCTGGGGATCGAACCTGCCT
CCTGGCACTGCAGAGACGCCACAGATCCCGTTGTGCCACATTGGGAACTCCTATGGTTATCATT
TGGACGATGGATTCTGCAGTGAACTGGAAAGCACATTTTCTGTCCAAAGAAAACATGTCCAGCT
GTTTGTTGTCAACTATCACGTAAGACCCTGGCTTGGCTGTAACCCACATTTTTTCAAGAAAAGT
GGAAATCTAGTTATATGCAAACATGCCTGATATTAATGTGTTGACTCAAACTTTTATAAAATAT
ACCTCTGCCAGCTGATGGCAACCCTGGGGCTCCCAGTCTGTGTCTCTGATATAAAAAGTTTGTC
CTGAAGGACGTATTGGCAGTTTCAGGACCTCATTTCTATTGCGAATTTGCATTTATAAAGGGGG
ACATTTTCTTTTTAAAAGAAAATTAGGTTGTAAGAAACAGAGGTGTTGAAAGCTTTGTATTTGG
CGTAACTTGATTAAAAGAGGAGAAATCATA

hide sequence

RefSeq Acc Id:

XM_021088435 ⟹ XP_020944094

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	92,096,670 - 92,101,177 (-)	NCBI

Sequence:

show sequence

AGGCTGTCAGAAGAGGCGTGGAGGAGGGGACGAGGGAGGGGCCCGGGGAGGAGAATCAAAGTCG
GAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTGTGTTGCTCTGGGGGC
TCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATTCCCTTCCAGCCTCGCCGAG
GTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAACAGCAGCTGGACACGCACGGAT
GGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTTGGCGCAATGACTCGGACACCATCGTCT
TCCTGAAGCCCTGGTCCCAGGGCACACTGAGCGACCAGCTGGCGAATCAGCTGCAGCATATATT
TAAGGGTTATCGCAGCAGCTTCACCAGGGACATAAGGGAATTCGTCAAGATGCTGGGCAGCGAC
TCATTTCAAGGAACAGACATCATGAGTTTCCAAGGAACTTCTTGGGTGTCAGCTCCAGATGCTC
CACCTTGGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGACCAGGGAACCAAGGAAACGGTGCA
GTGGCTCCTCTACGACATCTGCCCCCAATTTGTCAGAGGCGTCCTGGAGACAGGGAAGTCGGAG
CTGGAGAAGCAAGTGAAGCCTGAAGCTTGGCTGTCCAGTGGCCCCACTCCTGGACCTGGCCGTC
TGCTGCTCGTCTGCCACGTCTCAGGATTCTACCCCAAACCCGTGTGGGTGATGTGGATGCGGGG
TGAGCAGGAGCAGCCTGGCACTCAGCAAGGTGACATCCTCCCCCATGCAGACGGGACGTGGTAT
CTCCGAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGGCTTGAGTTGCCGAGTGAAGCACA
GCAGCCTAGGAGACCAGGACATCATCCTTTACTGGGACCACAGTCATGTCTTGGTGATCGTCTT
GTCAGTACTGGCTTTCATCCTTGTGCTCGGTGGAAGCTTCGCCTTCTGGTTTAGGAGGCGCCGT
GTCTATCAAAACATCCAGTGACTGTTCTTACCATATCCCGTCTATGTGGACCTCAAGATCTTAG
GGTTTTGGTGCTCAGAATTCGGCAGTGAAAGAGAGCTACCTTGAAGAAGCAGAGGACAAGCATA
AAGCAGCTCTTGTCACATCCTTTGAACATGTTATCTAAGAGGATTCAAGTTCTTTTTCAGTGTA
CTGAAAGTTTATAAGCCCTGGCGGTTCTGTAAAAACAGATGTGCAGACTCAGATACCTCTCAGG
GACAAGCAGATGAGGGCTGAGGTGGAATTGTGTCATTTTTTTTGTTGTTTGTTTTCTTTTGGAC
ATCCTGTGGCATATGGAGTTCCTGGGCCAGGGATCTAATCTGAACCACTGTTTCGACTTATGCT
GCAGCTGCAGTAGTGCTGGATCCTTTTACCCACCGCACACGGCTGGGGATCGAACCTGCCTCCT
GGCACTGCAGAGACGCCACAGATCCCGTTGTGCCACATTGGGAACTCCTATGGTTATCATTTGG
ACGATGGATTCTGCAGTGAACTGGAAAGCACATTTTCTGTCCAAAGAAAACATGTCCAGCTGTT
TGTTGTCAACTATCACGTAAGACCCTGGCTTGGCTGTAACCCACATTTTTTCAAGAAAAGTGGA
AATCTAGTTATATGCAAACATGCCTGATATTAATGTGTTGACTCAAACTTTTATAAAATATACC
TCTGCCAGCTGATGGCAACCCTGGGGCTCCCAGTCTGTGTCTCTGATATAAAAAGTTTGTCCTG
AAGGACGTATTGGCAGTTTCAGGACCTCATTTCTATTGCGAATTTGCATTTATAAAGGGGGACA
TTTTCTTTTTAAAAGAAAATTAGGTTGTAAGAAACAGAGGTGTTGAAAGCTTTGTATTTGGCGT
AACTTGATTAAAAGAGGAGAAATCATA

hide sequence

RefSeq Acc Id:

XM_021088436 ⟹ XP_020944095

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	92,096,670 - 92,101,177 (-)	NCBI

Sequence:

show sequence

AGGCTGTCAGAAGAGGCGTGGAGGAGGGGACGAGGGAGGGGCCCGGGGAGGAGAATCAAAGTCG
GAGAGAGCAGAGCCAGCCTCGCCCAGCGACATGGGGTACCTGCCGTTTGTGTTGCTCTGGGGGC
TCCCCCAGATCTGGGAAAATTCTGAGGGCTCCTCGGATCTGCATTCCCTTCCAGCCTCGCCGAG
GTTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAACAGCAGCTGGACACGCACGGAT
GGCCTGGGGTGGGTGGGGGAGCTGCAAGCCTACACTTGGCGCAATGACTCGGACACCATCGTCT
TCCTGAAGCCCTGGTCCCAGGGCACACTGAGCGACCAGCTGGCGAATCAGCTGCAGCATATATT
TAAGGGTTATCGCAGCAGCTTCACCAGGGACATAAGGGAATTCGTCAAGATGCTGGGCAGCGAC
TCTCCAGATGCTCCACCTTGGATGCAGAGGGTCTGTAGAGTGCTCAACGAGGACCAGGGAACCA
AGGAAACGGTGCAGTGGCTCCTCTACGACATCTGCCCCCAATTTGTCAGAGGCGTCCTGGAGAC
AGGGAAGTCGGAGCTGGAGAAGCAAGTGAAGCCTGAAGCTTGGCTGTCCAGTGGCCCCACTCCT
GGACCTGGCCGTCTGCTGCTCGTCTGCCACGTCTCAGGATTCTACCCCAAACCCGTGTGGGTGA
TGTGGATGCGGGGTGAGCAGGAGCAGCCTGGCACTCAGCAAGGTGACATCCTCCCCCATGCAGA
CGGGACGTGGTATCTCCGAGTAACCCTGGATGTGGCGGCTGGGGAGGCATCTGGCTTGAGTTGC
CGAGTGAAGCACAGCAGCCTAGGAGACCAGGACATCATCCTTTACTGGGACCACAGTCATGTCT
TGGTGATCGTCTTGTCAGTACTGGCTTTCATCCTTGTGCTCGGTGGAAGCTTCGCCTTCTGGTT
TAGGAGGCGCCGTGTCTATCAAAACATCCAGTGACTGTTCTTACCATATCCCGTCTATGTGGAC
CTCAAGATCTTAGGGTTTTGGTGCTCAGAATTCGGCAGTGAAAGAGAGCTACCTTGAAGAAGCA
GAGGACAAGCATAAAGCAGCTCTTGTCACATCCTTTGAACATGTTATCTAAGAGGATTCAAGTT
CTTTTTCAGTGTACTGAAAGTTTATAAGCCCTGGCGGTTCTGTAAAAACAGATGTGCAGACTCA
GATACCTCTCAGGGACAAGCAGATGAGGGCTGAGGTGGAATTGTGTCATTTTTTTTGTTGTTTG
TTTTCTTTTGGACATCCTGTGGCATATGGAGTTCCTGGGCCAGGGATCTAATCTGAACCACTGT
TTCGACTTATGCTGCAGCTGCAGTAGTGCTGGATCCTTTTACCCACCGCACACGGCTGGGGATC
GAACCTGCCTCCTGGCACTGCAGAGACGCCACAGATCCCGTTGTGCCACATTGGGAACTCCTAT
GGTTATCATTTGGACGATGGATTCTGCAGTGAACTGGAAAGCACATTTTCTGTCCAAAGAAAAC
ATGTCCAGCTGTTTGTTGTCAACTATCACGTAAGACCCTGGCTTGGCTGTAACCCACATTTTTT
CAAGAAAAGTGGAAATCTAGTTATATGCAAACATGCCTGATATTAATGTGTTGACTCAAACTTT
TATAAAATATACCTCTGCCAGCTGATGGCAACCCTGGGGCTCCCAGTCTGTGTCTCTGATATAA
AAAGTTTGTCCTGAAGGACGTATTGGCAGTTTCAGGACCTCATTTCTATTGCGAATTTGCATTT
ATAAAGGGGGACATTTTCTTTTTAAAAGAAAATTAGGTTGTAAGAAACAGAGGTGTTGAAAGCT
TTGTATTTGGCGTAACTTGATTAAAAGAGGAGAAATCATA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001096150	(Get FASTA)	NCBI Sequence Viewer
	XP_005663291	(Get FASTA)	NCBI Sequence Viewer
	XP_005663293	(Get FASTA)	NCBI Sequence Viewer
	XP_020944093	(Get FASTA)	NCBI Sequence Viewer
	XP_020944094	(Get FASTA)	NCBI Sequence Viewer
	XP_020944095	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAF38760	(Get FASTA)	NCBI Sequence Viewer
	BAF38763	(Get FASTA)	NCBI Sequence Viewer
	BAF38764	(Get FASTA)	NCBI Sequence Viewer
	CAB38184	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000006876
	ENSSSCP00000006876.4
	ENSSSCP00000080702.1
	ENSSSCP00045019544.1
	ENSSSCP00050021738.1
	ENSSSCP00070046156.1

RefSeq Acc Id:	XP_020944095 ⟸ XM_021088436
- Peptide Label:	isoform X5
- UniProtKB:	A0A4X1VXX2 (UniProtKB/TrEMBL), A0A8D1MBL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGYLPFVLLWGLPQIWENSEGSSDLHSLPASPRFFPLRCLQISSFANSSWTRTDGLGWVGELQA YTWRNDSDTIVFLKPWSQGTLSDQLANQLQHIFKGYRSSFTRDIREFVKMLGSDSPDAPPWMQR VCRVLNEDQGTKETVQWLLYDICPQFVRGVLETGKSELEKQVKPEAWLSSGPTPGPGRLLLVCH VSGFYPKPVWVMWMRGEQEQPGTQQGDILPHADGTWYLRVTLDVAAGEASGLSCRVKHSSLGDQ DIILYWDHSHVLVIVLSVLAFILVLGGSFAFWFRRRRVYQNIQ hide sequence

RefSeq Acc Id:	XP_005663293 ⟸ XM_005663236
- Peptide Label:	isoform X4
- UniProtKB:	A0A4X1VXX2 (UniProtKB/TrEMBL), A0A8D1MBL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGYLPFVLLWGLPQIWENSEGSSDLHSLPASPRFFPLRCLQISSFANSSWTRTDGLGWVGELQA YTWRNDSDTIVFLKPWSQGTLSDQLANQLQHIFKGYRSSFTRDIREFVKMLGSDSPDAPPWMQR VCRVLNEDQGTKETVQWLLYDICPQFVRGVLETGKSELEKQVKPEAWLSSGPTPGPGRLLLVCH VSGFYPKPVWVMWMRGEQEQPGTQQGDILPHADGTWYLRVTLDVAAGEASGLSCRVKHSSLGDQ DIILYWADHSHVLVIVLSVLAFILVLGGSFAFWFRRRRVYQNIQ hide sequence

RefSeq Acc Id:	XP_020944094 ⟸ XM_021088435
- Peptide Label:	isoform X3
- UniProtKB:	A0A4X1VXX2 (UniProtKB/TrEMBL), A0A8D1MBL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGYLPFVLLWGLPQIWENSEGSSDLHSLPASPRFFPLRCLQISSFANSSWTRTDGLGWVGELQA YTWRNDSDTIVFLKPWSQGTLSDQLANQLQHIFKGYRSSFTRDIREFVKMLGSDSFQGTDIMSF QGTSWVSAPDAPPWMQRVCRVLNEDQGTKETVQWLLYDICPQFVRGVLETGKSELEKQVKPEAW LSSGPTPGPGRLLLVCHVSGFYPKPVWVMWMRGEQEQPGTQQGDILPHADGTWYLRVTLDVAAG EASGLSCRVKHSSLGDQDIILYWDHSHVLVIVLSVLAFILVLGGSFAFWFRRRRVYQNIQ hide sequence

RefSeq Acc Id:	XP_020944093 ⟸ XM_021088434
- Peptide Label:	isoform X2
- UniProtKB:	A0A4X1VXX2 (UniProtKB/TrEMBL), A0A8D1MBL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGYLPFVLLWGLPQIWENSEGSSDLHSLPASPRFFPLRCLQISSFANSSWTRTDGLGWVGELQA YTWRNDSDTIVFLKPWSQGTLSDQLANQLQHIFKGYRSSFTRDIREFVKMLGSDSFQGTDIMSF QGTSWVSAPDAPPWMQRVCRVLNEDQGTKETVQWLLYDICPQFVRGVLETGKSELEKQVKPEAW LSSGPTPGPGRLLLVCHVSGFYPKPVWVMWMRGEQEQPGTQQGDILPHADGTWYLRVTLDVAAG EASGLSCRVKHSSLGDQDIILYWADHSHVLVIVLSVLAFILVLGGSFAFWFRRRRVYQNIQ hide sequence

RefSeq Acc Id:	XP_005663291 ⟸ XM_005663234
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1VXX2 (UniProtKB/TrEMBL), A0A8D1MBL4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGYLPFVLLWGLPQIWENSEGSSDLHSLPASPRFFPLRCLQISSFANSSWTRTDGLGWVGELQA YTWRNDSDTIVFLKPWSQGTLSDQLANQLQHIFKGYRSSFTRDIREFVKMLGSDYPFEIQISAG CEVLSGNSSESFLHSAFQGTDIMSFQGTSWVSAPDAPPWMQRVCRVLNEDQGTKETVQWLLYDI CPQFVRGVLETGKSELEKQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVWVMWMRGEQEQPG TQQGDILPHADGTWYLRVTLDVAAGEASGLSCRVKHSSLGDQDIILYWADHSHVLVIVLSVLAF ILVLGGSFAFWFRRRRVYQNIQ hide sequence

RefSeq Acc Id:

NP_001096150 ⟸ NM_001102680

- UniProtKB:

A0ZQ05 (UniProtKB/TrEMBL), A0A8D1HKC2 (UniProtKB/TrEMBL), F6PUL8 (UniProtKB/TrEMBL), A0A4X1VXX2 (UniProtKB/TrEMBL), A0A8D1MBL4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGYLPFVLLWGLPQIWENSEGSSDLHSLPASPRFFPLRCLQISSFANSSWTRTDGLGWVGELQA
YTWRNDSDTIVFLKPWSQGTLSDQLANQLQHIFKGYRSSFTRDIREFVKMLGSDYPFEIQISAG
CEVLSGNSSESFLHSAFQGTDIMSFQGTSWVSAPDAPPWMQRVCRVLNEDQGTKETVQWLLYDI
CPQFVRGVLETGKSELEKQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVWVMWMRGEQEQPG
TQQGDILPHADGTWYLRVTLDVAAGEASGLSCRVKHSSLGDQDIILYWDHSHVLVIVLSVLAFI
LVLGGSFAFWFRRRRVYQNIQ

hide sequence

RefSeq Acc Id:

ENSSSCP00000080702 ⟸ ENSSSCT00000105460

RefSeq Acc Id:

ENSSSCP00000006876 ⟸ ENSSSCT00000007067

Protein Domains

Ig-like MHC class I-like antigen recognition-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000058723	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00045016637	UniProtKB/TrEMBL
	ENSSSCG00050038382	UniProtKB/TrEMBL
	ENSSSCG00070027143	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000007067	ENTREZGENE
	ENSSSCT00000007067.6	UniProtKB/TrEMBL
	ENSSSCT00000105460.1	UniProtKB/TrEMBL
	ENSSSCT00045028274.1	UniProtKB/TrEMBL
	ENSSSCT00050051768.1	UniProtKB/TrEMBL
	ENSSSCT00070054421.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.30.500.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_C1-set	UniProtKB/TrEMBL
	MHC_I-like_Ag-recog	UniProtKB/TrEMBL
	MHC_I-like_Ag-recog_sf	UniProtKB/TrEMBL
	MHC_I/II-like_Ag-recog	UniProtKB/TrEMBL
KEGG Report	ssc:100124526	UniProtKB/TrEMBL
NCBI Gene	CD1D	ENTREZGENE
PANTHER	ANTIGEN-PRESENTING GLYCOPROTEIN CD1D	UniProtKB/TrEMBL
	MHC CLASS I-RELATED	UniProtKB/TrEMBL
Pfam	C1-set	UniProtKB/TrEMBL
	MHC_I_3	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
	SSF54452	UniProtKB/TrEMBL
UniProt	A0A4X1VXX2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1HKC2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1MBL4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FNC6_PIG	UniProtKB/TrEMBL
	A0ZQ05	ENTREZGENE, UniProtKB/TrEMBL
	F6PUL8	ENTREZGENE
UniProt Secondary	F6PUL8	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar