IFN-OMEGA-7 (interferon omega 7) - Rat Genome Database

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Gene: IFN-OMEGA-7 (interferon omega 7) Sus scrofa
Analyze
Symbol: IFN-OMEGA-7
Name: interferon omega 7
RGD ID: 14270861
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); response to exogenous dsRNA (inferred); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: inferferon omega 7; PoIFN-alpha II-3
RGD Orthologs
Human
Mouse
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,316,989 - 201,317,561 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,316,989 - 201,317,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,853,285 - 224,853,857 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:1800582   PMID:20406849   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IFN-OMEGA-7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,316,989 - 201,317,561 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,316,989 - 201,317,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,853,285 - 224,853,857 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFNW1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38921,140,632 - 21,141,832 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl921,140,632 - 21,141,832 (-)EnsemblGRCh38hg38GRCh38
GRCh37921,140,631 - 21,141,831 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36921,130,631 - 21,132,144 (-)NCBINCBI36Build 36hg18NCBI36
Build 34921,130,630 - 21,132,144NCBI
Celera921,078,911 - 21,080,424 (-)NCBICelera
Cytogenetic Map9p21.3NCBI
HuRef921,103,789 - 21,105,302 (-)NCBIHuRef
CHM1_1921,140,436 - 21,141,949 (-)NCBICHM1_1
T2T-CHM13v2.0921,154,492 - 21,155,692 (-)NCBIT2T-CHM13v2.0
Gm13271
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39488,673,105 - 88,673,653 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl488,673,105 - 88,673,653 (+)EnsemblGRCm39 Ensembl
GRCm38488,754,868 - 88,755,416 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl488,754,868 - 88,755,416 (+)EnsemblGRCm38mm10GRCm38
MGSCv37488,400,772 - 88,401,320 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36488,226,099 - 88,226,647 (+)NCBIMGSCv36mm8
Celera487,265,377 - 87,265,925 (+)NCBICelera
Cytogenetic Map4C4NCBI
cM Map442.03NCBI
LOC100996206
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211103,403,727 - 103,407,229 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19103,409,608 - 103,413,174 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0920,948,943 - 20,950,629 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1921,604,387 - 21,605,643 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl921,604,716 - 21,605,318 (-)Ensemblpanpan1.1panPan2
LOC100686162
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11140,697,253 - 40,697,786 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1139,362,763 - 39,363,305 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01141,642,248 - 41,642,790 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11140,334,315 - 40,334,857 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01140,122,937 - 40,123,479 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01140,758,117 - 40,758,659 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in IFN-OMEGA-7
11 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 5 4 3 5 2 17 1 2 1
Below cutoff 3 2 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000026435   ⟹   ENSSSCP00000019860
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1201,316,989 - 201,317,561 (-)Ensembl
RefSeq Acc Id: NM_001130232   ⟹   NP_001123704
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11201,316,989 - 201,317,561 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001123704   ⟸   NM_001130232
- Peptide Label: precursor
- UniProtKB: B3VSC8 (UniProtKB/TrEMBL),   A0A4X1WC42 (UniProtKB/TrEMBL),   I3L756 (UniProtKB/TrEMBL),   Q29098 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000019860   ⟸   ENSSSCT00000026435


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040054 Ensembl
  ENSSSCG00000056734 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025040594 UniProtKB/TrEMBL
  ENSSSCG00035032751 UniProtKB/TrEMBL
  ENSSSCG00055007979 UniProtKB/TrEMBL
  ENSSSCG00065018518 UniProtKB/TrEMBL
  ENSSSCG00070030363 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026435 ENTREZGENE
  ENSSSCT00000026435.2 UniProtKB/TrEMBL
  ENSSSCT00025055156.1 UniProtKB/TrEMBL
  ENSSSCT00035043384.1 UniProtKB/TrEMBL
  ENSSSCT00055015573.1 UniProtKB/TrEMBL
  ENSSSCT00065024610.1 UniProtKB/TrEMBL
  ENSSSCT00070061099.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report ssc:100154075 UniProtKB/TrEMBL
NCBI Gene IFN-OMEGA-7 ENTREZGENE
PANTHER INTERFERON OMEGA-1 UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A4X1WC42 ENTREZGENE, UniProtKB/TrEMBL
  B3VSC8 ENTREZGENE, UniProtKB/TrEMBL
  I3L756 ENTREZGENE
  Q29098 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary I3L756 UniProtKB/TrEMBL