IFN-OMEGA-5 (interferon omega 7) - Rat Genome Database

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Gene: IFN-OMEGA-5 (interferon omega 7) Sus scrofa
Analyze
No known orthologs.
Symbol: IFN-OMEGA-5
Name: interferon omega 7
RGD ID: 14250251
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); response to exogenous dsRNA (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,781,339 - 201,781,911 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,781,339 - 201,781,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,400,323 - 225,400,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:20406849   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in IFN-OMEGA-5
1 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system
High
Medium
Low 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000034967   ⟹   ENSSSCP00000030951
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1201,781,339 - 201,781,911 (+)Ensembl
RefSeq Acc Id: NM_001130533   ⟹   NP_001124005
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11201,781,339 - 201,781,911 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001124005   ⟸   NM_001130533
- Peptide Label: precursor
- UniProtKB: B3VSD1 (UniProtKB/TrEMBL),   A0A4X1WC82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000030951   ⟸   ENSSSCT00000034967


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038075 Ensembl
  ENSSSCG00000056145 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015028773 UniProtKB/TrEMBL
  ENSSSCG00025055668 UniProtKB/TrEMBL
  ENSSSCG00030070401 UniProtKB/TrEMBL
  ENSSSCG00035018730 UniProtKB/TrEMBL
  ENSSSCG00040069554 UniProtKB/TrEMBL
  ENSSSCG00045011547 UniProtKB/TrEMBL
  ENSSSCG00050065246 UniProtKB/TrEMBL
  ENSSSCG00055006968 UniProtKB/TrEMBL
  ENSSSCG00060012506 UniProtKB/TrEMBL
  ENSSSCG00065054996 UniProtKB/TrEMBL
  ENSSSCG00070030330 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000034967 ENTREZGENE
  ENSSSCT00000034967.2 UniProtKB/TrEMBL
  ENSSSCT00015038192.1 UniProtKB/TrEMBL
  ENSSSCT00025076207.1 UniProtKB/TrEMBL
  ENSSSCT00030098477.1 UniProtKB/TrEMBL
  ENSSSCT00035024207.1 UniProtKB/TrEMBL
  ENSSSCT00040095361.1 UniProtKB/TrEMBL
  ENSSSCT00045019540.1 UniProtKB/TrEMBL
  ENSSSCT00050088874.1 UniProtKB/TrEMBL
  ENSSSCT00055013496.1 UniProtKB/TrEMBL
  ENSSSCT00060016406.1 UniProtKB/TrEMBL
  ENSSSCT00065075295.1 UniProtKB/TrEMBL
  ENSSSCT00070061054.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report ssc:100154098 UniProtKB/TrEMBL
NCBI Gene IFN-OMEGA-5 ENTREZGENE
PANTHER INTERFERON OMEGA-1 UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A4X1WC82 ENTREZGENE, UniProtKB/TrEMBL
  B3VSD1 ENTREZGENE, UniProtKB/TrEMBL