NOTCH3 (notch receptor 3) - Rat Genome Database

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Gene: NOTCH3 (notch receptor 3) Sus scrofa
Analyze
Symbol: NOTCH3
Name: notch receptor 3
RGD ID: 14213700
Description: ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN artery morphogenesis (ortholog); forebrain development (ortholog); glomerular capillary formation (ortholog); PARTICIPATES IN altered Notch signaling pathway involving the main players; CADASIL pathway; Notch signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Auditory Neuropathy (ortholog); autism spectrum disorder (ortholog); FOUND IN membrane (inferred); nucleoplasm (inferred); nucleus (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurogenic locus notch homolog protein 3; notch 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl262,364,501 - 62,402,344 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1262,364,507 - 62,402,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,891,971 - 61,909,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:24366099  


Genomics

Comparative Map Data
NOTCH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl262,364,501 - 62,402,344 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1262,364,507 - 62,402,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,891,971 - 61,909,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOTCH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,159,038 - 15,200,995 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,159,038 - 15,200,995 (-)EnsemblGRCh38hg38GRCh38
GRCh371915,269,849 - 15,311,806 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,131,444 - 15,172,792 (-)NCBINCBI36Build 36hg18NCBI36
Build 341915,131,444 - 15,172,792NCBI
Celera1915,166,185 - 15,207,451 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,838,304 - 14,879,920 (-)NCBIHuRef
CHM1_11915,269,920 - 15,311,263 (-)NCBICHM1_1
T2T-CHM13v2.01915,283,989 - 15,325,912 (-)NCBIT2T-CHM13v2.0
Notch3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391732,339,794 - 32,385,869 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1732,339,794 - 32,385,826 (-)EnsemblGRCm39 Ensembl
GRCm381732,120,820 - 32,166,896 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,120,820 - 32,166,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv371732,257,838 - 32,303,797 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361731,849,599 - 31,895,558 (-)NCBIMGSCv36mm8
Celera1733,039,371 - 33,085,333 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.37NCBI
Notch3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8711,783,550 - 11,834,585 (-)NCBIGRCr8
mRatBN7.2711,132,984 - 11,184,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,133,706 - 11,184,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx713,952,392 - 14,002,867 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0715,829,787 - 15,880,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0713,701,326 - 13,751,735 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0714,138,495 - 14,189,688 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl714,138,495 - 14,189,688 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0714,294,587 - 14,345,774 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,688,267 - 12,740,015 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1712,688,266 - 12,740,015 (-)NCBI
Celera79,246,229 - 9,296,285 (-)NCBICelera
Cytogenetic Map7q11NCBI
Notch3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554958,012,502 - 8,047,710 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554958,012,370 - 8,048,616 (+)NCBIChiLan1.0ChiLan1.0
NOTCH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,073,377 - 20,114,601 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,075,966 - 19,117,408 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,692,571 - 14,733,758 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11915,677,649 - 15,715,703 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1915,678,674 - 15,715,080 (-)Ensemblpanpan1.1panPan2
NOTCH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,946,654 - 46,978,821 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,937,485 - 46,978,219 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,794,145 - 46,827,285 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02047,433,115 - 47,466,250 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2047,432,263 - 47,465,239 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,667,867 - 46,700,947 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02047,084,556 - 47,117,682 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02047,358,143 - 47,391,299 (+)NCBIUU_Cfam_GSD_1.0
Notch3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118205,716,842 - 205,752,291 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365965,265,999 - 5,300,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365965,265,984 - 5,301,430 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOTCH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,762,570 - 13,803,676 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,761,512 - 13,793,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,702,583 - 5,746,374 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Notch3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249012,292,640 - 2,328,433 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249012,292,257 - 2,328,433 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NOTCH3
424 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 9 4 3 3 2 23 2 3 2
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000029966   ⟹   ENSSSCP00000021312
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl262,364,501 - 62,402,344 (+)Ensembl
RefSeq Acc Id: XM_021083631   ⟹   XP_020939290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1262,364,507 - 62,402,348 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020939290   ⟸   XM_021083631
- UniProtKB: A0A8D1BF26 (UniProtKB/TrEMBL),   I3LB93 (UniProtKB/TrEMBL),   A0A8D1K9Z4 (UniProtKB/TrEMBL),   A0A8D1PVJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000021312   ⟸   ENSSSCT00000029966
Protein Domains
EGF-like   LNR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025065460 UniProtKB/TrEMBL
  ENSSSCG00030062748 UniProtKB/TrEMBL
  ENSSSCG00035077539 UniProtKB/TrEMBL
  ENSSSCG00040037102 UniProtKB/TrEMBL
  ENSSSCG00045037694 UniProtKB/TrEMBL
  ENSSSCG00055006304 UniProtKB/TrEMBL
  ENSSSCG00060064992 UniProtKB/TrEMBL
  ENSSSCG00065004288 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029966 ENTREZGENE
  ENSSSCT00000029966.3 UniProtKB/TrEMBL
  ENSSSCT00025089865.1 UniProtKB/TrEMBL
  ENSSSCT00030087786.1 UniProtKB/TrEMBL
  ENSSSCT00035105673.1 UniProtKB/TrEMBL
  ENSSSCT00040049743.1 UniProtKB/TrEMBL
  ENSSSCT00045065141.1 UniProtKB/TrEMBL
  ENSSSCT00055012233.1 UniProtKB/TrEMBL
  ENSSSCT00060088732.1 UniProtKB/TrEMBL
  ENSSSCT00065005892.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.30.300.320 UniProtKB/TrEMBL
  3.30.70.3310 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  DUF3454_notch UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Notch UniProtKB/TrEMBL
  Notch-like_dom_sf UniProtKB/TrEMBL
  Notch_3 UniProtKB/TrEMBL
  Notch_dom UniProtKB/TrEMBL
  Notch_NOD_dom UniProtKB/TrEMBL
  Notch_NODP_dom UniProtKB/TrEMBL
NCBI Gene NOTCH3 ENTREZGENE
PANTHER CRUMBS FAMILY MEMBER UniProtKB/TrEMBL
  DROSOPHILA CRUMBS HOMOLOG UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  hEGF UniProtKB/TrEMBL
  NOD UniProtKB/TrEMBL
  NODP UniProtKB/TrEMBL
  Notch UniProtKB/TrEMBL
PIRSF Notch UniProtKB/TrEMBL
PRINTS EGFBLOOD UniProtKB/TrEMBL
  LNOTCHREPEAT UniProtKB/TrEMBL
  NOTCH UniProtKB/TrEMBL
  NOTCH3 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LNR UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  DUF3454 UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  NOD UniProtKB/TrEMBL
  NODP UniProtKB/TrEMBL
  SM00004 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF90193 UniProtKB/TrEMBL
UniProt A0A8D1BF26 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CF93_PIG UniProtKB/TrEMBL
  A0A8D1K9Z4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PVJ4 ENTREZGENE, UniProtKB/TrEMBL
  I3LB93 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:100314 ENTREZGENE