Notch3 (notch receptor 3) - Rat Genome Database

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Gene: Notch3 (notch receptor 3) Ictidomys tridecemlineatus
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Symbol: Notch3
Name: notch receptor 3
RGD ID: 12532283
Description: ENCODES a protein that exhibits calcium ion binding (inferred); enzyme binding (inferred); identical protein binding (inferred); INVOLVED IN artery morphogenesis (ortholog); forebrain development (ortholog); negative regulation of cell differentiation (ortholog); PARTICIPATES IN altered Notch signaling pathway involving the main players; CADASIL pathway; Notch signaling pathway; ASSOCIATED WITH Auditory Neuropathy (ortholog); autism spectrum disorder (ortholog); breast ductal carcinoma (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurogenic locus notch homolog protein 3; notch 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118205,716,842 - 205,752,291 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365965,265,999 - 5,300,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365965,265,984 - 5,301,430 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Notch3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118205,716,842 - 205,752,291 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365965,265,999 - 5,300,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365965,265,984 - 5,301,430 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOTCH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,159,038 - 15,200,995 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,159,038 - 15,200,995 (-)EnsemblGRCh38hg38GRCh38
GRCh371915,269,849 - 15,311,806 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,131,444 - 15,172,792 (-)NCBINCBI36Build 36hg18NCBI36
Build 341915,131,444 - 15,172,792NCBI
Celera1915,166,185 - 15,207,451 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,838,304 - 14,879,920 (-)NCBIHuRef
CHM1_11915,269,920 - 15,311,263 (-)NCBICHM1_1
T2T-CHM13v2.01915,283,989 - 15,325,912 (-)NCBIT2T-CHM13v2.0
Notch3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391732,339,794 - 32,385,869 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1732,339,794 - 32,385,826 (-)EnsemblGRCm39 Ensembl
GRCm381732,120,820 - 32,166,896 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,120,820 - 32,166,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv371732,257,838 - 32,303,797 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361731,849,599 - 31,895,558 (-)NCBIMGSCv36mm8
Celera1733,039,371 - 33,085,333 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.37NCBI
Notch3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8711,783,550 - 11,834,585 (-)NCBIGRCr8
mRatBN7.2711,132,984 - 11,184,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,133,706 - 11,184,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx713,952,392 - 14,002,867 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0715,829,787 - 15,880,272 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0713,701,326 - 13,751,735 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0714,138,495 - 14,189,688 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl714,138,495 - 14,189,688 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0714,294,587 - 14,345,774 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4712,688,267 - 12,740,015 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1712,688,266 - 12,740,015 (-)NCBI
Celera79,246,229 - 9,296,285 (-)NCBICelera
Cytogenetic Map7q11NCBI
Notch3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554958,012,502 - 8,047,710 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554958,012,370 - 8,048,616 (+)NCBIChiLan1.0ChiLan1.0
NOTCH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22020,073,377 - 20,114,601 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11919,075,966 - 19,117,408 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,692,571 - 14,733,758 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11915,677,649 - 15,715,703 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1915,678,674 - 15,715,080 (-)Ensemblpanpan1.1panPan2
NOTCH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,946,654 - 46,978,821 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,937,485 - 46,978,219 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,794,145 - 46,827,285 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02047,433,115 - 47,466,250 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2047,432,263 - 47,465,239 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12046,667,867 - 46,700,947 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02047,084,556 - 47,117,682 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02047,358,143 - 47,391,299 (+)NCBIUU_Cfam_GSD_1.0
NOTCH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl262,364,501 - 62,402,344 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1262,364,507 - 62,402,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,891,971 - 61,909,274 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOTCH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,762,570 - 13,803,676 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,761,512 - 13,793,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,702,583 - 5,746,374 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Notch3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249012,292,640 - 2,328,433 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249012,292,257 - 2,328,433 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021731430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000003412   ⟹   ENSSTOP00000003054
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365965,265,999 - 5,300,429 (+)Ensembl
RefSeq Acc Id: XM_021731430   ⟹   XP_021587105
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118205,716,842 - 205,752,291 (+)NCBI
SpeTri2.0NW_0049365965,265,984 - 5,301,430 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021587105 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003054.3
GenBank Protein KAG3280055 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021587105   ⟸   XM_021731430
- UniProtKB: I3M287 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000003054   ⟸   ENSSTOT00000003412
Protein Domains
EGF-like   LNR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003378 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003412.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  3.30.300.320 UniProtKB/TrEMBL
  3.30.70.3310 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  DUF3454_notch UniProtKB/TrEMBL
  EGF-like_Ca-bd_dom UniProtKB/TrEMBL
  EGF-like_CS UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  EGF-type_Asp/Asn_hydroxyl_site UniProtKB/TrEMBL
  EGF_Ca-bd_CS UniProtKB/TrEMBL
  Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Notch UniProtKB/TrEMBL
  Notch-like_dom_sf UniProtKB/TrEMBL
  Notch_3 UniProtKB/TrEMBL
  Notch_dom UniProtKB/TrEMBL
  Notch_NOD_dom UniProtKB/TrEMBL
  Notch_NODP_dom UniProtKB/TrEMBL
NCBI Gene Notch3 ENTREZGENE
PANTHER METALLOENDOPEPTIDASE UniProtKB/TrEMBL
  NOTCH LIGAND FAMILY MEMBER UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  hEGF UniProtKB/TrEMBL
  NOD UniProtKB/TrEMBL
  NODP UniProtKB/TrEMBL
  Notch UniProtKB/TrEMBL
PIRSF Notch UniProtKB/TrEMBL
PRINTS LNOTCHREPEAT UniProtKB/TrEMBL
  NOTCH UniProtKB/TrEMBL
  NOTCH3 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  ASX_HYDROXYL UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  LNR UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  DUF3454 UniProtKB/TrEMBL
  EGF UniProtKB/TrEMBL
  EGF_CA UniProtKB/TrEMBL
  NOD UniProtKB/TrEMBL
  NODP UniProtKB/TrEMBL
  SM00004 UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
  SSF90193 UniProtKB/TrEMBL
UniProt I3M287 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-08 Notch3  notch receptor 3    notch 3  Symbol and/or name change 5135510 APPROVED