C2H5orf24 (chromosome 2 C5orf24 homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: C2H5orf24 (chromosome 2 C5orf24 homolog) Sus scrofa
Analyze
Symbol: C2H5orf24 (Ensembl: C5orf24)
Name: chromosome 2 C5orf24 homolog
RGD ID: 14212744
Description: ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UPF0461 protein C5orf24 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2137,037,929 - 137,049,447 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12137,037,971 - 137,049,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22142,654,058 - 142,665,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
C2H5orf24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2137,037,929 - 137,049,447 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12137,037,971 - 137,049,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22142,654,058 - 142,665,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C5orf24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,833,602 - 134,859,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,845,680 - 134,859,735 (+)EnsemblGRCh38hg38GRCh38
GRCh375134,181,370 - 134,195,425 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365134,209,269 - 134,222,687 (+)NCBINCBI36Build 36hg18NCBI36
Celera5130,309,065 - 130,323,730 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5129,367,584 - 129,381,643 (+)NCBIHuRef
CHM1_15133,613,998 - 133,628,061 (+)NCBICHM1_1
T2T-CHM13v2.05135,360,554 - 135,386,687 (+)NCBIT2T-CHM13v2.0
B230219D22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,840,937 - 55,851,313 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,840,937 - 55,851,313 (+)EnsemblGRCm39 Ensembl
GRCm381355,693,124 - 55,703,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,693,124 - 55,703,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,794,485 - 55,804,861 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,702,746 - 55,713,122 (+)NCBIMGSCv36mm8
Celera1356,747,801 - 56,758,238 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
C17h5orf24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,928,209 - 8,938,126 (-)NCBIGRCr8
mRatBN7.2178,923,041 - 8,932,958 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,922,675 - 8,933,356 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,938,568 - 8,948,505 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,468,054 - 10,477,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0178,934,958 - 8,944,895 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,454,121 - 9,464,076 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,457,719 - 9,458,288 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,561,574 - 11,571,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,950,864 - 14,968,381 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,004,898 - 9,014,909 (-)NCBICelera
Cytogenetic Map17p14NCBI
LOC102006745
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540830,044,031 - 30,054,015 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540830,043,402 - 30,054,015 (+)NCBIChiLan1.0ChiLan1.0
C4H5orf24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24130,142,790 - 130,156,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15128,282,350 - 128,296,116 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05130,247,436 - 130,261,173 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15136,390,786 - 136,404,092 (+)NCBIpanpan1.1PanPan1.1panPan2
C11H5orf24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,913,598 - 22,924,979 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,920,483 - 22,922,639 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,662,999 - 21,674,347 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,720,333 - 23,731,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1123,720,338 - 23,731,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11122,419,597 - 22,430,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01122,285,523 - 22,296,881 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,927,875 - 22,939,230 (+)NCBIUU_Cfam_GSD_1.0
CUNH5orf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,044,958 - 123,055,178 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,069,854 - 2,079,441 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,069,845 - 2,079,458 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH5orf24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12337,632,974 - 37,647,009 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603440,271,573 - 40,285,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH5orf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,211,551 - 12,218,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,208,397 - 12,218,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C2H5orf24
300 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 5 2 3 5 23 1 3 1
Low 5 2 2 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000039433   ⟹   ENSSSCP00000035443
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2137,038,320 - 137,049,447 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000047815   ⟹   ENSSSCP00000044348
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2137,037,929 - 137,049,441 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000082051   ⟹   ENSSSCP00000061090
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2137,044,795 - 137,049,441 (+)Ensembl
RefSeq Acc Id: XM_005655017   ⟹   XP_005655074
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12137,037,971 - 137,049,449 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013987605   ⟹   XP_013843059
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12137,037,972 - 137,049,449 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005655074   ⟸   XM_005655017
- Peptide Label: isoform X1
- UniProtKB: A0A286ZVC5 (UniProtKB/TrEMBL),   A0A480EPF8 (UniProtKB/TrEMBL),   A0A4X1V145 (UniProtKB/TrEMBL),   A0A8D0JRY0 (UniProtKB/TrEMBL),   A0A8D1VJQ0 (UniProtKB/TrEMBL),   A0A8D1DJQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843059   ⟸   XM_013987605
- Peptide Label: isoform X2
- UniProtKB: A0A5G2Q9T2 (UniProtKB/TrEMBL),   A0A4X1V155 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000035443   ⟸   ENSSSCT00000039433
RefSeq Acc Id: ENSSSCP00000061090   ⟸   ENSSSCT00000082051
RefSeq Acc Id: ENSSSCP00000044348   ⟸   ENSSSCT00000047815


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000034954 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030319 UniProtKB/TrEMBL
  ENSSSCG00015027244 UniProtKB/TrEMBL
  ENSSSCG00025045078 UniProtKB/TrEMBL
  ENSSSCG00030004953 UniProtKB/TrEMBL
  ENSSSCG00035055599 UniProtKB/TrEMBL
  ENSSSCG00040014699 UniProtKB/TrEMBL
  ENSSSCG00045015888 UniProtKB/TrEMBL
  ENSSSCG00050077260 UniProtKB/TrEMBL
  ENSSSCG00055011734 UniProtKB/TrEMBL
  ENSSSCG00060043215 UniProtKB/TrEMBL
  ENSSSCG00065058272 UniProtKB/TrEMBL
  ENSSSCG00070021166 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000039433.2 UniProtKB/TrEMBL
  ENSSSCT00000047815 ENTREZGENE
  ENSSSCT00000047815.3 UniProtKB/TrEMBL
  ENSSSCT00000082051 ENTREZGENE
  ENSSSCT00000082051.2 UniProtKB/TrEMBL
  ENSSSCT00005048155.1 UniProtKB/TrEMBL
  ENSSSCT00005048171.1 UniProtKB/TrEMBL
  ENSSSCT00015036234.1 UniProtKB/TrEMBL
  ENSSSCT00015036275.1 UniProtKB/TrEMBL
  ENSSSCT00015036328.1 UniProtKB/TrEMBL
  ENSSSCT00025061187.1 UniProtKB/TrEMBL
  ENSSSCT00025061227.1 UniProtKB/TrEMBL
  ENSSSCT00025061351.1 UniProtKB/TrEMBL
  ENSSSCT00030006697.1 UniProtKB/TrEMBL
  ENSSSCT00030006699.1 UniProtKB/TrEMBL
  ENSSSCT00030006707.1 UniProtKB/TrEMBL
  ENSSSCT00035074178.1 UniProtKB/TrEMBL
  ENSSSCT00035074189.1 UniProtKB/TrEMBL
  ENSSSCT00035074194.1 UniProtKB/TrEMBL
  ENSSSCT00040019736.1 UniProtKB/TrEMBL
  ENSSSCT00040019768.1 UniProtKB/TrEMBL
  ENSSSCT00040019782.1 UniProtKB/TrEMBL
  ENSSSCT00045027012.1 UniProtKB/TrEMBL
  ENSSSCT00045027091.1 UniProtKB/TrEMBL
  ENSSSCT00045027118.1 UniProtKB/TrEMBL
  ENSSSCT00050106328.1 UniProtKB/TrEMBL
  ENSSSCT00050106348.1 UniProtKB/TrEMBL
  ENSSSCT00050106364.1 UniProtKB/TrEMBL
  ENSSSCT00055022944.1 UniProtKB/TrEMBL
  ENSSSCT00055022995.1 UniProtKB/TrEMBL
  ENSSSCT00055023018.1 UniProtKB/TrEMBL
  ENSSSCT00060058604.1 UniProtKB/TrEMBL
  ENSSSCT00060058608.1 UniProtKB/TrEMBL
  ENSSSCT00060058620.1 UniProtKB/TrEMBL
  ENSSSCT00065079721.1 UniProtKB/TrEMBL
  ENSSSCT00065079730.1 UniProtKB/TrEMBL
  ENSSSCT00065079737.1 UniProtKB/TrEMBL
  ENSSSCT00070042056.1 UniProtKB/TrEMBL
  ENSSSCT00070042060.1 UniProtKB/TrEMBL
  ENSSSCT00070042068.1 UniProtKB/TrEMBL
InterPro DUF5568 UniProtKB/TrEMBL
KEGG Report ssc:100627041 UniProtKB/TrEMBL
NCBI Gene C2H5orf24 ENTREZGENE
PANTHER PTHR31894 UniProtKB/TrEMBL
  UPF0461 PROTEIN C5ORF24 UniProtKB/TrEMBL
Pfam DUF5568 UniProtKB/TrEMBL
UniProt A0A286ZVC5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480EPF8 ENTREZGENE
  A0A4X1V145 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V155 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2Q9T2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JRY0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1DJQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VJQ0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A480EPF8 UniProtKB/TrEMBL
VGNC ID VGNC:86010 ENTREZGENE