CUNH5orf24 (chromosome unknown C5orf24 homolog) - Rat Genome Database

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Gene: CUNH5orf24 (chromosome unknown C5orf24 homolog) Ictidomys tridecemlineatus
Analyze
Symbol: CUNH5orf24 (Ensembl: C5orf24)
Name: chromosome unknown C5orf24 homolog
RGD ID: 12569354
Description: ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C5orf24; LOC101970268; UPF0461 protein C5orf24 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,044,958 - 123,055,178 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,069,854 - 2,079,441 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,069,845 - 2,079,458 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
CUNH5orf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,044,958 - 123,055,178 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365972,069,854 - 2,079,441 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,069,845 - 2,079,458 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C5orf24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,833,602 - 134,859,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,845,680 - 134,859,735 (+)EnsemblGRCh38hg38GRCh38
GRCh375134,181,370 - 134,195,425 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365134,209,269 - 134,222,687 (+)NCBINCBI36Build 36hg18NCBI36
Celera5130,309,065 - 130,323,730 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5129,367,584 - 129,381,643 (+)NCBIHuRef
CHM1_15133,613,998 - 133,628,061 (+)NCBICHM1_1
T2T-CHM13v2.05135,360,554 - 135,386,687 (+)NCBIT2T-CHM13v2.0
B230219D22Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,840,937 - 55,851,313 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,840,937 - 55,851,313 (+)EnsemblGRCm39 Ensembl
GRCm381355,693,124 - 55,703,500 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,693,124 - 55,703,500 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,794,485 - 55,804,861 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,702,746 - 55,713,122 (+)NCBIMGSCv36mm8
Celera1356,747,801 - 56,758,238 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
C17h5orf24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8178,928,209 - 8,938,126 (-)NCBIGRCr8
mRatBN7.2178,923,041 - 8,932,958 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,922,675 - 8,933,356 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx178,938,568 - 8,948,505 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,468,054 - 10,477,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0178,934,958 - 8,944,895 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,454,121 - 9,464,076 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,457,719 - 9,458,288 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,561,574 - 11,571,515 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,950,864 - 14,968,381 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,004,898 - 9,014,909 (-)NCBICelera
Cytogenetic Map17p14NCBI
LOC102006745
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540830,044,031 - 30,054,015 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540830,043,402 - 30,054,015 (+)NCBIChiLan1.0ChiLan1.0
C4H5orf24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24130,142,790 - 130,156,556 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15128,282,350 - 128,296,116 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05130,247,436 - 130,261,173 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15136,390,786 - 136,404,092 (+)NCBIpanpan1.1PanPan1.1panPan2
C11H5orf24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,913,598 - 22,924,979 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,920,483 - 22,922,639 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,662,999 - 21,674,347 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,720,333 - 23,731,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1123,720,338 - 23,731,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11122,419,597 - 22,430,943 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01122,285,523 - 22,296,881 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,927,875 - 22,939,230 (+)NCBIUU_Cfam_GSD_1.0
C2H5orf24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2137,037,929 - 137,049,447 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12137,037,971 - 137,049,449 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22142,654,058 - 142,665,529 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH5orf24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12337,632,974 - 37,647,009 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603440,271,573 - 40,285,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH5orf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,211,551 - 12,218,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,208,397 - 12,218,942 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000004006   ⟹   ENSSTOP00000003591
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365972,069,854 - 2,079,441 (+)Ensembl
RefSeq Acc Id: XM_005333184   ⟹   XP_005333241
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,044,958 - 123,055,178 (+)NCBI
SpeTri2.0NW_0049365972,069,845 - 2,079,458 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005333185   ⟹   XP_005333242
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,044,958 - 123,055,178 (+)NCBI
SpeTri2.0NW_0049365972,069,845 - 2,079,458 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333241 (Get FASTA)   NCBI Sequence Viewer  
  XP_005333242 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003591.2
Reference Protein Sequences
RefSeq Acc Id: XP_005333241   ⟸   XM_005333184
- Peptide Label: isoform X1
- UniProtKB: I3M3F2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005333242   ⟸   XM_005333185
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000003591   ⟸   ENSSTOT00000004006


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004019 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004006.3 UniProtKB/TrEMBL
InterPro DUF5568 UniProtKB/TrEMBL
NCBI Gene LOC101970268 ENTREZGENE
PANTHER PTHR31894 UniProtKB/TrEMBL
  UPF0461 PROTEIN C5ORF24 UniProtKB/TrEMBL
Pfam DUF5568 UniProtKB/TrEMBL
UniProt I3M3F2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 CUNH5orf24  chromosome unknown C5orf24 homolog  LOC101970268  chromosome unknown open reading frame, human C5orf24  Symbol and/or name change 5135510 APPROVED