BROX (BRO1 domain and CAAX motif containing) - Rat Genome Database

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Gene: BROX (BRO1 domain and CAAX motif containing) Sus scrofa
Analyze
Symbol: BROX
Name: BRO1 domain and CAAX motif containing
RGD ID: 14211960
Description: INVOLVED IN mitotic nuclear membrane reassembly (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Loeys-Dietz syndrome 4 (ortholog); parathyroid carcinoma (ortholog); FOUND IN nuclear envelope (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BRO1 domain-containing protein BROX
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1011,466,004 - 11,486,974 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11011,466,173 - 11,486,983 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21013,621,400 - 13,636,473 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
BROX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1011,466,004 - 11,486,974 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11011,466,173 - 11,486,983 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21013,621,400 - 13,636,473 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BROX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381222,712,564 - 222,735,187 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1222,712,553 - 222,735,196 (+)EnsemblGRCh38hg38GRCh38
GRCh371222,885,906 - 222,908,529 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361220,952,529 - 220,972,732 (+)NCBINCBI36Build 36hg18NCBI36
Celera1196,105,074 - 196,125,277 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1193,560,289 - 193,580,492 (+)NCBIHuRef
CHM1_11224,158,972 - 224,179,175 (+)NCBICHM1_1
T2T-CHM13v2.01221,946,320 - 221,968,943 (+)NCBIT2T-CHM13v2.0
Brox
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,057,916 - 183,078,839 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,057,916 - 183,078,813 (-)EnsemblGRCm39 Ensembl
GRCm381183,276,352 - 183,297,298 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,276,352 - 183,297,269 (-)EnsemblGRCm38mm10GRCm38
Celera1190,277,448 - 190,298,022 (-)NCBICelera
Cytogenetic Map1H5NCBI
Brox
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81397,451,736 - 97,471,598 (-)NCBIGRCr8
mRatBN7.21394,920,107 - 94,940,189 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1394,920,112 - 94,940,227 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1397,425,477 - 97,445,264 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01398,825,287 - 98,845,074 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01396,007,437 - 96,027,220 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013101,677,896 - 101,697,743 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13101,677,902 - 101,697,684 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013100,886,368 - 100,906,452 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41399,319,507 - 99,339,291 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11399,508,442 - 99,528,227 (-)NCBI
Celera1394,447,203 - 94,466,862 (-)NCBICelera
Cytogenetic Map13q26NCBI
Brox
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555201,797,657 - 1,818,708 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555201,797,657 - 1,819,359 (-)NCBIChiLan1.0ChiLan1.0
BROX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2126,586,043 - 26,608,455 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1126,539,467 - 26,561,876 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01198,385,748 - 198,408,408 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11203,399,224 - 203,421,920 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1203,399,224 - 203,421,920 (+)Ensemblpanpan1.1panPan2
BROX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13816,971,449 - 16,990,673 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3816,971,504 - 16,990,372 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3817,027,790 - 17,047,007 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03817,017,951 - 17,039,102 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3817,017,765 - 17,040,508 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13817,023,182 - 17,044,114 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03817,372,045 - 17,391,207 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03817,667,450 - 17,688,535 (+)NCBIUU_Cfam_GSD_1.0
Brox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934454,717,189 - 54,741,113 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365266,496 - 30,743 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365266,185 - 30,108 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BROX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,835,448 - 6,858,097 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,834,584 - 6,858,052 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660557,073,830 - 7,096,754 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brox
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248355,240,333 - 5,261,416 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248355,240,643 - 5,261,299 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BROX
963 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 2 3 5 1 17 2 3 3
Low 1 2 1 6
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000011855   ⟹   ENSSSCP00000011552
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1011,469,478 - 11,485,558 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044579   ⟹   ENSSSCP00000041405
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1011,466,004 - 11,486,974 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000056725   ⟹   ENSSSCP00000040942
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1011,467,195 - 11,486,974 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000076020   ⟹   ENSSSCP00000072360
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1011,467,657 - 11,485,559 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000076712   ⟹   ENSSSCP00000059635
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1011,466,004 - 11,484,879 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000082515   ⟹   ENSSSCP00000068312
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1011,466,004 - 11,484,820 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000097663   ⟹   ENSSSCP00000075234
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1011,467,041 - 11,485,551 (+)Ensembl
RefSeq Acc Id: XM_005667929   ⟹   XP_005667986
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11011,467,625 - 11,486,983 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980031   ⟹   XP_013835485
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11011,466,173 - 11,486,982 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013980032   ⟹   XP_013835486
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11011,467,557 - 11,486,983 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013835485   ⟸   XM_013980031
- UniProtKB: A0A287ABZ4 (UniProtKB/TrEMBL),   A0A4X1THH2 (UniProtKB/TrEMBL),   A0A5G2Q777 (UniProtKB/TrEMBL),   A0A8D0WCX6 (UniProtKB/TrEMBL),   A0A8D1SL52 (UniProtKB/TrEMBL),   A0A8D1IJ12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013835486   ⟸   XM_013980032
- UniProtKB: A0A287ABZ4 (UniProtKB/TrEMBL),   A0A4X1THH2 (UniProtKB/TrEMBL),   A0A5G2Q777 (UniProtKB/TrEMBL),   A0A8D0WCX6 (UniProtKB/TrEMBL),   A0A8D1SL52 (UniProtKB/TrEMBL),   A0A8D1IJ12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005667986   ⟸   XM_005667929
- UniProtKB: A0A287ABZ4 (UniProtKB/TrEMBL),   A0A4X1THH2 (UniProtKB/TrEMBL),   A0A5G2Q777 (UniProtKB/TrEMBL),   A0A8D0WCX6 (UniProtKB/TrEMBL),   A0A8D1SL52 (UniProtKB/TrEMBL),   A0A8D1IJ12 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041405   ⟸   ENSSSCT00000044579
RefSeq Acc Id: ENSSSCP00000011552   ⟸   ENSSSCT00000011855
RefSeq Acc Id: ENSSSCP00000072360   ⟸   ENSSSCT00000076020
RefSeq Acc Id: ENSSSCP00000059635   ⟸   ENSSSCT00000076712
RefSeq Acc Id: ENSSSCP00000040942   ⟸   ENSSSCT00000056725
RefSeq Acc Id: ENSSSCP00000068312   ⟸   ENSSSCT00000082515
RefSeq Acc Id: ENSSSCP00000075234   ⟸   ENSSSCT00000097663
Protein Domains
BRO1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010836 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005015833 UniProtKB/TrEMBL
  ENSSSCG00015036598 UniProtKB/TrEMBL
  ENSSSCG00025020991 UniProtKB/TrEMBL
  ENSSSCG00030027926 UniProtKB/TrEMBL
  ENSSSCG00035054444 UniProtKB/TrEMBL
  ENSSSCG00040012531 UniProtKB/TrEMBL
  ENSSSCG00045027349 UniProtKB/TrEMBL
  ENSSSCG00060001700 UniProtKB/TrEMBL
  ENSSSCG00065075614 UniProtKB/TrEMBL
  ENSSSCG00070009906 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011855.4 UniProtKB/TrEMBL
  ENSSSCT00000044579 ENTREZGENE
  ENSSSCT00000044579.2 UniProtKB/TrEMBL
  ENSSSCT00000056725 ENTREZGENE
  ENSSSCT00000056725.2 UniProtKB/TrEMBL
  ENSSSCT00000076020.2 UniProtKB/TrEMBL
  ENSSSCT00000076712.1 UniProtKB/TrEMBL
  ENSSSCT00000082515.1 UniProtKB/TrEMBL
  ENSSSCT00000097663.1 UniProtKB/TrEMBL
  ENSSSCT00005024751.1 UniProtKB/TrEMBL
  ENSSSCT00005024770.1 UniProtKB/TrEMBL
  ENSSSCT00005024787.1 UniProtKB/TrEMBL
  ENSSSCT00005024829.1 UniProtKB/TrEMBL
  ENSSSCT00015048769.1 UniProtKB/TrEMBL
  ENSSSCT00015048904.1 UniProtKB/TrEMBL
  ENSSSCT00015049001.1 UniProtKB/TrEMBL
  ENSSSCT00025028494.1 UniProtKB/TrEMBL
  ENSSSCT00025028601.1 UniProtKB/TrEMBL
  ENSSSCT00030039040.1 UniProtKB/TrEMBL
  ENSSSCT00030039049.1 UniProtKB/TrEMBL
  ENSSSCT00030039057.1 UniProtKB/TrEMBL
  ENSSSCT00035072638.1 UniProtKB/TrEMBL
  ENSSSCT00035072645.1 UniProtKB/TrEMBL
  ENSSSCT00035072648.1 UniProtKB/TrEMBL
  ENSSSCT00040016572.1 UniProtKB/TrEMBL
  ENSSSCT00045046608.1 UniProtKB/TrEMBL
  ENSSSCT00045046697.1 UniProtKB/TrEMBL
  ENSSSCT00045046831.1 UniProtKB/TrEMBL
  ENSSSCT00060002081.1 UniProtKB/TrEMBL
  ENSSSCT00065104366.1 UniProtKB/TrEMBL
  ENSSSCT00065104375.1 UniProtKB/TrEMBL
  ENSSSCT00065104386.1 UniProtKB/TrEMBL
  ENSSSCT00070019348.1 UniProtKB/TrEMBL
  ENSSSCT00070019353.1 UniProtKB/TrEMBL
  ENSSSCT00070019359.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.280 UniProtKB/TrEMBL
InterPro BRO1_dom UniProtKB/TrEMBL
  BRO1_sf UniProtKB/TrEMBL
  BROX UniProtKB/TrEMBL
KEGG Report ssc:106504096 UniProtKB/TrEMBL
NCBI Gene BROX ENTREZGENE
PANTHER BRO1 DOMAIN-CONTAINING PROTEIN BROX UniProtKB/TrEMBL
  PTHR23032 UniProtKB/TrEMBL
Pfam BRO1 UniProtKB/TrEMBL
PROSITE BRO1 UniProtKB/TrEMBL
SMART BRO1 UniProtKB/TrEMBL
UniProt A0A287ABZ4 ENTREZGENE
  A0A4X1THH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TLX6_PIG UniProtKB/TrEMBL
  A0A5G2Q777 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RK25_PIG UniProtKB/TrEMBL
  A0A8D0W9Y2_PIG UniProtKB/TrEMBL
  A0A8D0WCX6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IBJ9_PIG UniProtKB/TrEMBL
  A0A8D1IJ12 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SL52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7L9_PIG UniProtKB/TrEMBL
  F1S9G9_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287AAM4 UniProtKB/TrEMBL
  A0A287ABZ4 UniProtKB/TrEMBL
  A0A5G2R288 UniProtKB/TrEMBL
VGNC ID VGNC:96132 ENTREZGENE