RAB8B (RAB8B, member RAS oncogene family) - Rat Genome Database

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Gene: RAB8B (RAB8B, member RAS oncogene family) Sus scrofa
Analyze
Symbol: RAB8B
Name: RAB8B, member RAS oncogene family (Ensembl:RAB8B, member RAS onco family)
RGD ID: 14206283
Description: ENCODES a protein that exhibits TPR domain binding (ortholog); INVOLVED IN cell-substrate junction organization (ortholog); cilium assembly (ortholog); positive regulation of cell projection organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell tip (ortholog); perinuclear region of cytoplasm (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-8B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1108,772,851 - 108,840,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11108,772,851 - 108,840,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,998,446 - 120,063,398 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB8B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1108,772,851 - 108,840,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11108,772,851 - 108,840,222 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21119,998,446 - 120,063,398 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381563,189,606 - 63,267,776 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1563,189,560 - 63,267,776 (+)EnsemblGRCh38hg38GRCh38
GRCh371563,481,805 - 63,559,975 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361561,268,781 - 61,347,028 (+)NCBINCBI36Build 36hg18NCBI36
Build 341561,268,785 - 61,343,422NCBI
Celera1540,361,335 - 40,438,724 (+)NCBICelera
Cytogenetic Map15q22.2NCBI
HuRef1540,304,775 - 40,382,999 (+)NCBIHuRef
CHM1_11563,600,874 - 63,679,075 (+)NCBICHM1_1
T2T-CHM13v2.01560,994,386 - 61,072,552 (+)NCBIT2T-CHM13v2.0
Rab8b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39966,750,891 - 66,826,987 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl966,750,946 - 66,826,969 (-)EnsemblGRCm39 Ensembl
GRCm38966,843,609 - 66,919,705 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl966,843,664 - 66,919,687 (-)EnsemblGRCm38mm10GRCm38
MGSCv37966,691,471 - 66,767,512 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36966,642,808 - 66,718,831 (-)NCBIMGSCv36mm8
Celera964,077,884 - 64,154,033 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map936.17NCBI
Rab8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8876,340,106 - 76,417,638 (-)NCBIGRCr8
mRatBN7.2867,458,921 - 67,536,466 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl867,458,923 - 67,536,384 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx872,992,995 - 73,067,789 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0871,265,830 - 71,340,724 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0869,100,711 - 69,178,108 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0872,641,680 - 72,714,646 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl872,638,003 - 72,714,664 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0876,975,899 - 77,047,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4871,156,502 - 71,231,807 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1871,175,555 - 71,250,861 (-)NCBI
Celera874,168,077 - 74,238,512 (+)NCBICelera
Cytogenetic Map8q24NCBI
Rab8b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545012,026,784 - 12,095,422 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545012,026,784 - 12,095,332 (-)NCBIChiLan1.0ChiLan1.0
RAB8B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21652,438,265 - 52,516,306 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11556,614,260 - 56,692,351 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01542,136,776 - 42,214,792 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11560,432,749 - 60,510,547 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1560,432,749 - 60,510,547 (+)Ensemblpanpan1.1panPan2
RAB8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13027,784,298 - 27,845,901 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3027,784,387 - 27,842,065 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3027,703,275 - 27,764,927 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03027,955,859 - 28,017,574 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3027,955,891 - 28,017,579 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13027,893,427 - 27,955,069 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03027,955,252 - 28,016,926 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03028,198,967 - 28,260,665 (+)NCBIUU_Cfam_GSD_1.0
Rab8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640105,920,372 - 105,983,602 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647123,768,415 - 23,834,129 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647123,768,460 - 23,832,072 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB8B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12620,275,555 - 20,354,298 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2620,275,258 - 20,354,202 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048121,045,683 - 121,125,449 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab8b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247819,251,212 - 9,325,642 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247819,253,039 - 9,324,873 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB8B
1343 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 23 1 3 3
Low 2 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000026677   ⟹   ENSSSCP00000021149
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1108,776,036 - 108,840,227 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000052686   ⟹   ENSSSCP00000048932
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1108,772,851 - 108,840,143 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056693   ⟹   ENSSSCP00000035385
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1108,779,965 - 108,840,227 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061279   ⟹   ENSSSCP00000042882
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1108,772,851 - 108,840,142 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000094117   ⟹   ENSSSCP00000079757
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1108,779,965 - 108,840,227 (-)Ensembl
RefSeq Acc Id: XM_001929029   ⟹   XP_001929064
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11108,772,851 - 108,840,222 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001929064   ⟸   XM_001929029
- UniProtKB: A0A4X1TYI9 (UniProtKB/TrEMBL),   A0A0B8RVJ8 (UniProtKB/TrEMBL),   A0A8D0N4Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000021149   ⟸   ENSSSCT00000026677
RefSeq Acc Id: ENSSSCP00000042882   ⟸   ENSSSCT00000061279
RefSeq Acc Id: ENSSSCP00000048932   ⟸   ENSSSCT00000052686
RefSeq Acc Id: ENSSSCP00000035385   ⟸   ENSSSCT00000056693
RefSeq Acc Id: ENSSSCP00000079757   ⟸   ENSSSCT00000094117


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026571 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015022221 UniProtKB/TrEMBL
  ENSSSCG00025076953 UniProtKB/TrEMBL
  ENSSSCG00030030379 UniProtKB/TrEMBL
  ENSSSCG00040057573 UniProtKB/TrEMBL
  ENSSSCG00045009105 UniProtKB/TrEMBL
  ENSSSCG00050066935 UniProtKB/TrEMBL
  ENSSSCG00055030486 UniProtKB/TrEMBL
  ENSSSCG00060068124 UniProtKB/TrEMBL
  ENSSSCG00065018091 UniProtKB/TrEMBL
  ENSSSCG00070012716 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026677 ENTREZGENE
  ENSSSCT00000026677.4 UniProtKB/TrEMBL
  ENSSSCT00000056693.3 UniProtKB/TrEMBL
  ENSSSCT00000061279.3 UniProtKB/TrEMBL
  ENSSSCT00000094117.1 UniProtKB/TrEMBL
  ENSSSCT00015029432.1 UniProtKB/TrEMBL
  ENSSSCT00015029553.1 UniProtKB/TrEMBL
  ENSSSCT00015029614.1 UniProtKB/TrEMBL
  ENSSSCT00015029731.1 UniProtKB/TrEMBL
  ENSSSCT00025106760.1 UniProtKB/TrEMBL
  ENSSSCT00025106775.1 UniProtKB/TrEMBL
  ENSSSCT00025106782.1 UniProtKB/TrEMBL
  ENSSSCT00030042180.1 UniProtKB/TrEMBL
  ENSSSCT00030042198.1 UniProtKB/TrEMBL
  ENSSSCT00030042216.1 UniProtKB/TrEMBL
  ENSSSCT00040078044.1 UniProtKB/TrEMBL
  ENSSSCT00040078284.1 UniProtKB/TrEMBL
  ENSSSCT00040078383.1 UniProtKB/TrEMBL
  ENSSSCT00045015531.1 UniProtKB/TrEMBL
  ENSSSCT00045015577.1 UniProtKB/TrEMBL
  ENSSSCT00045015619.1 UniProtKB/TrEMBL
  ENSSSCT00045015679.1 UniProtKB/TrEMBL
  ENSSSCT00050091207.1 UniProtKB/TrEMBL
  ENSSSCT00050091216.1 UniProtKB/TrEMBL
  ENSSSCT00050091219.1 UniProtKB/TrEMBL
  ENSSSCT00055060695.1 UniProtKB/TrEMBL
  ENSSSCT00055060702.1 UniProtKB/TrEMBL
  ENSSSCT00055060710.1 UniProtKB/TrEMBL
  ENSSSCT00055060717.1 UniProtKB/TrEMBL
  ENSSSCT00055060725.1 UniProtKB/TrEMBL
  ENSSSCT00060093057.1 UniProtKB/TrEMBL
  ENSSSCT00060093072.1 UniProtKB/TrEMBL
  ENSSSCT00060093081.1 UniProtKB/TrEMBL
  ENSSSCT00060093087.1 UniProtKB/TrEMBL
  ENSSSCT00065024082.1 UniProtKB/TrEMBL
  ENSSSCT00065024145.1 UniProtKB/TrEMBL
  ENSSSCT00065024301.1 UniProtKB/TrEMBL
  ENSSSCT00065024452.1 UniProtKB/TrEMBL
  ENSSSCT00070024802.1 UniProtKB/TrEMBL
  ENSSSCT00070024815.1 UniProtKB/TrEMBL
  ENSSSCT00070024819.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report ssc:100153972 UniProtKB/TrEMBL
NCBI Gene RAB8B ENTREZGENE
PANTHER LD44762P UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-8B UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0B8RVJ8 ENTREZGENE
  A0A286ZUS1_PIG UniProtKB/TrEMBL
  A0A287AGC0_PIG UniProtKB/TrEMBL
  A0A287AXQ6_PIG UniProtKB/TrEMBL
  A0A4X1TYI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TYJ2_PIG UniProtKB/TrEMBL
  A0A4X1TYT4_PIG UniProtKB/TrEMBL
  A0A8D0N4Q8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1SG61_PIG UniProtKB/TrEMBL
  A0A8D1SG70_PIG UniProtKB/TrEMBL
  A0A8D1XRF6_PIG UniProtKB/TrEMBL
  F1S091_PIG UniProtKB/TrEMBL
VGNC ID VGNC:98276 ENTREZGENE