SMAD6 (SMAD family member 6) - Rat Genome Database

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Gene: SMAD6 (SMAD family member 6) Sus scrofa
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Symbol: SMAD6
Name: SMAD family member 6
RGD ID: 14062613
Description: ENCODES a protein that exhibits chromatin binding (inferred); co-SMAD binding (inferred); I-SMAD binding (inferred); INVOLVED IN aorta development (ortholog); coronary vasculature development (ortholog); heart valve development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH aortic valve disease 1 (ortholog); aortic valve disease 2 (ortholog); bicuspid aortic valve disease (ortholog); FOUND IN cytoplasm (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mothers against decapentaplegic homolog 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1164,656,887 - 164,735,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11164,652,602 - 164,735,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21182,396,037 - 182,478,849 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SMAD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1164,656,887 - 164,735,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11164,652,602 - 164,735,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21182,396,037 - 182,478,849 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMAD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381566,702,236 - 66,782,849 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1566,702,236 - 66,782,849 (+)EnsemblGRCh38hg38GRCh38
GRCh371566,994,574 - 67,075,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361564,781,688 - 64,861,380 (+)NCBINCBI36Build 36hg18NCBI36
Build 341564,781,723 - 64,861,380NCBI
Celera1543,882,942 - 43,962,620 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1543,830,247 - 43,909,482 (+)NCBIHuRef
CHM1_11567,112,770 - 67,192,414 (+)NCBICHM1_1
T2T-CHM13v2.01564,524,017 - 64,604,653 (+)NCBIT2T-CHM13v2.0
Smad6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39963,860,358 - 63,929,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl963,860,358 - 63,929,341 (-)EnsemblGRCm39 Ensembl
GRCm38963,953,076 - 64,022,085 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl963,953,076 - 64,022,059 (-)EnsemblGRCm38mm10GRCm38
MGSCv37963,800,883 - 63,869,866 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36963,751,143 - 63,819,327 (-)NCBIMGSCv36mm8
Celera961,176,785 - 61,248,052 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map934.4NCBI
Smad6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8873,345,457 - 73,414,985 (-)NCBIGRCr8
mRatBN7.2864,450,114 - 64,519,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl864,450,114 - 64,519,763 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx869,964,906 - 70,033,580 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0868,237,362 - 68,306,026 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0866,107,492 - 66,176,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0868,897,746 - 68,967,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl868,898,296 - 68,966,108 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0868,608,372 - 68,677,705 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,144,395 - 68,214,652 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1868,163,448 - 68,232,779 (-)NCBI
Celera863,858,003 - 63,926,291 (-)NCBICelera
Cytogenetic Map8q24NCBI
Smad6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554509,005,332 - 9,070,790 (-)NCBIChiLan1.0ChiLan1.0
SMAD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21655,954,503 - 56,034,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11560,126,630 - 60,206,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01545,648,709 - 45,728,821 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11563,923,356 - 64,001,607 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,923,379 - 64,001,154 (+)Ensemblpanpan1.1panPan2
SMAD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13030,938,908 - 31,014,259 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3030,937,849 - 31,014,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3030,868,681 - 30,945,004 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03031,135,483 - 31,212,132 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3031,133,955 - 31,211,274 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13031,064,510 - 31,140,721 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03031,124,002 - 31,200,323 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03031,365,990 - 31,442,355 (+)NCBIUU_Cfam_GSD_1.0
Smad6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640108,933,410 - 109,008,484 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647126,781,549 - 26,856,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647126,781,420 - 26,856,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMAD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12616,760,117 - 16,841,286 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2616,759,260 - 16,840,240 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048124,628,125 - 124,709,889 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smad6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247816,042,904 - 6,107,860 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247816,043,183 - 6,108,959 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SMAD6
1610 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 8 4 3 4 2 7 2 3 2
Below cutoff 2 1 13 1

Sequence


RefSeq Acc Id: ENSSSCT00000005460   ⟹   ENSSSCP00000005325
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1164,656,887 - 164,735,704 (+)Ensembl
RefSeq Acc Id: XM_003480446   ⟹   XP_003480494
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11164,652,602 - 164,735,084 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003480494   ⟸   XM_003480446
- UniProtKB: A0A4X1TCK6 (UniProtKB/TrEMBL),   F1SJJ2 (UniProtKB/TrEMBL),   A0A480LDK6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005325   ⟸   ENSSSCT00000005460
Protein Domains
MH1   MH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004948 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015016356 UniProtKB/TrEMBL
  ENSSSCG00025031663 UniProtKB/TrEMBL
  ENSSSCG00030046605 UniProtKB/TrEMBL
  ENSSSCG00035057559 UniProtKB/TrEMBL
  ENSSSCG00040031142 UniProtKB/TrEMBL
  ENSSSCG00045010759 UniProtKB/TrEMBL
  ENSSSCG00050003529 UniProtKB/TrEMBL
  ENSSSCG00055030190 UniProtKB/TrEMBL
  ENSSSCG00060066861 UniProtKB/TrEMBL
  ENSSSCG00065051589 UniProtKB/TrEMBL
  ENSSSCG00070007782 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005460 ENTREZGENE
  ENSSSCT00000005460.6 UniProtKB/TrEMBL
  ENSSSCT00015021693.1 UniProtKB/TrEMBL
  ENSSSCT00025043044.1 UniProtKB/TrEMBL
  ENSSSCT00030065005.1 UniProtKB/TrEMBL
  ENSSSCT00035076981.1 UniProtKB/TrEMBL
  ENSSSCT00040041856.1 UniProtKB/TrEMBL
  ENSSSCT00045018282.1 UniProtKB/TrEMBL
  ENSSSCT00050004730.1 UniProtKB/TrEMBL
  ENSSSCT00055060063.1 UniProtKB/TrEMBL
  ENSSSCT00060091250.1 UniProtKB/TrEMBL
  ENSSSCT00065070649.1 UniProtKB/TrEMBL
  ENSSSCT00070015045.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.10 UniProtKB/TrEMBL
  3.90.520.10 UniProtKB/TrEMBL
InterPro Dwarfin UniProtKB/TrEMBL
  MAD_homology1_Dwarfin-type UniProtKB/TrEMBL
  MAD_homology_MH1 UniProtKB/TrEMBL
  SMAD-like_dom_sf UniProtKB/TrEMBL
  SMAD_dom_Dwarfin-type UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  SMAD_MH1_sf UniProtKB/TrEMBL
NCBI Gene SMAD6 ENTREZGENE
PANTHER MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 6 UniProtKB/TrEMBL
  PTHR13703 UniProtKB/TrEMBL
Pfam MH1 UniProtKB/TrEMBL
  MH2 UniProtKB/TrEMBL
PROSITE MH1 UniProtKB/TrEMBL
  MH2 UniProtKB/TrEMBL
SMART DWA UniProtKB/TrEMBL
  DWB UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF56366 UniProtKB/TrEMBL
UniProt A0A480LDK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TCK6 ENTREZGENE, UniProtKB/TrEMBL
  F1SJJ2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93220 ENTREZGENE