SMAD6 (SMAD family member 6) - Rat Genome Database

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Gene: SMAD6 (SMAD family member 6) Pan paniscus
Analyze
Symbol: SMAD6
Name: SMAD family member 6
RGD ID: 11806596
Description: ENCODES a protein that exhibits chromatin binding (inferred); co-SMAD binding (inferred); I-SMAD binding (inferred); INVOLVED IN aorta development (ortholog); coronary vasculature development (ortholog); heart valve development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH aortic valve disease 1 (ortholog); aortic valve disease 2 (ortholog); bicuspid aortic valve disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mothers against decapentaplegic homolog 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21655,954,503 - 56,034,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11560,126,630 - 60,206,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01545,648,709 - 45,728,821 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11563,923,356 - 64,001,607 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,923,379 - 64,001,154 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SMAD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21655,954,503 - 56,034,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11560,126,630 - 60,206,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01545,648,709 - 45,728,821 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11563,923,356 - 64,001,607 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,923,379 - 64,001,154 (+)Ensemblpanpan1.1panPan2
SMAD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381566,702,236 - 66,782,849 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1566,702,236 - 66,782,849 (+)EnsemblGRCh38hg38GRCh38
GRCh371566,994,574 - 67,075,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361564,781,688 - 64,861,380 (+)NCBINCBI36Build 36hg18NCBI36
Build 341564,781,723 - 64,861,380NCBI
Celera1543,882,942 - 43,962,620 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1543,830,247 - 43,909,482 (+)NCBIHuRef
CHM1_11567,112,770 - 67,192,414 (+)NCBICHM1_1
T2T-CHM13v2.01564,524,017 - 64,604,653 (+)NCBIT2T-CHM13v2.0
Smad6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39963,860,358 - 63,929,374 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl963,860,358 - 63,929,341 (-)EnsemblGRCm39 Ensembl
GRCm38963,953,076 - 64,022,085 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl963,953,076 - 64,022,059 (-)EnsemblGRCm38mm10GRCm38
MGSCv37963,800,883 - 63,869,866 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36963,751,143 - 63,819,327 (-)NCBIMGSCv36mm8
Celera961,176,785 - 61,248,052 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map934.4NCBI
Smad6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8873,345,457 - 73,414,985 (-)NCBIGRCr8
mRatBN7.2864,450,114 - 64,519,673 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl864,450,114 - 64,519,763 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx869,964,906 - 70,033,580 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0868,237,362 - 68,306,026 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0866,107,492 - 66,176,160 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0868,897,746 - 68,967,221 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl868,898,296 - 68,966,108 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0868,608,372 - 68,677,705 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,144,395 - 68,214,652 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1868,163,448 - 68,232,779 (-)NCBI
Celera863,858,003 - 63,926,291 (-)NCBICelera
Cytogenetic Map8q24NCBI
Smad6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554509,005,332 - 9,070,790 (-)NCBIChiLan1.0ChiLan1.0
SMAD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13030,938,908 - 31,014,259 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3030,937,849 - 31,014,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3030,868,681 - 30,945,004 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03031,135,483 - 31,212,132 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3031,133,955 - 31,211,274 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13031,064,510 - 31,140,721 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03031,124,002 - 31,200,323 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03031,365,990 - 31,442,355 (+)NCBIUU_Cfam_GSD_1.0
Smad6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640108,933,410 - 109,008,484 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647126,781,549 - 26,856,571 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647126,781,420 - 26,856,556 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMAD6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1164,656,887 - 164,735,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11164,652,602 - 164,735,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21182,396,037 - 182,478,849 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMAD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12616,760,117 - 16,841,286 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2616,759,260 - 16,840,240 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048124,628,125 - 124,709,889 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smad6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247816,042,904 - 6,107,860 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247816,043,183 - 6,108,959 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003828002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSPPAT00000031632   ⟹   ENSPPAP00000008992
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1563,923,379 - 64,001,154 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000031633   ⟹   ENSPPAP00000008993
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1563,923,379 - 64,001,154 (+)Ensembl
RefSeq Acc Id: XM_003828002   ⟹   XP_003828050
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21655,954,503 - 56,034,004 (+)NCBI
NHGRI_mPanPan11560,126,630 - 60,206,563 (+)NCBI
Mhudiblu_PPA_v01545,648,709 - 45,728,821 (+)NCBI
PanPan1.11563,923,356 - 64,001,607 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003828050 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000008992.1
  ENSPPAP00000008993.1
RefSeq Acc Id: XP_003828050   ⟸   XM_003828002
- UniProtKB: A0A2R8ZZ54 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000008993   ⟸   ENSPPAT00000031633
RefSeq Acc Id: ENSPPAP00000008992   ⟸   ENSPPAT00000031632
Protein Domains
MH1   MH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027722 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031632.1 UniProtKB/TrEMBL
  ENSPPAT00000031633.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.10 UniProtKB/TrEMBL
  3.90.520.10 UniProtKB/TrEMBL
InterPro Dwarfin UniProtKB/TrEMBL
  MAD_homology1_Dwarfin-type UniProtKB/TrEMBL
  MAD_homology_MH1 UniProtKB/TrEMBL
  SMAD-like_dom_sf UniProtKB/TrEMBL
  SMAD_dom_Dwarfin-type UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  SMAD_MH1_sf UniProtKB/TrEMBL
NCBI Gene SMAD6 ENTREZGENE
PANTHER MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 6 UniProtKB/TrEMBL
  PTHR13703 UniProtKB/TrEMBL
Pfam MH1 UniProtKB/TrEMBL
  MH2 UniProtKB/TrEMBL
PROSITE MH1 UniProtKB/TrEMBL
  MH2 UniProtKB/TrEMBL
SMART DWA UniProtKB/TrEMBL
  DWB UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF56366 UniProtKB/TrEMBL
UniProt A0A2R8ZZ54 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A176_PANPA UniProtKB/TrEMBL