MIS18BP1 (MIS18 binding protein 1) - Rat Genome Database

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Gene: MIS18BP1 (MIS18 binding protein 1) Sus scrofa
Analyze
Symbol: MIS18BP1
Name: MIS18 binding protein 1
RGD ID: 14061288
Description: ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN CENP-A recruiting complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mis18-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1175,401,390 - 175,448,276 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11175,401,386 - 175,449,399 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21195,196,729 - 195,219,436 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
MIS18BP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1175,401,390 - 175,448,276 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11175,401,386 - 175,449,399 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21195,196,729 - 195,219,436 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIS18BP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381445,203,190 - 45,253,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1445,203,190 - 45,253,540 (-)EnsemblGRCh38hg38GRCh38
GRCh371445,672,393 - 45,722,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361444,742,143 - 44,792,146 (-)NCBINCBI36Build 36hg18NCBI36
Build 341444,742,143 - 44,792,146NCBI
Celera1425,533,645 - 25,583,858 (-)NCBICelera
Cytogenetic Map14q21.2NCBI
HuRef1425,783,114 - 25,833,326 (-)NCBIHuRef
CHM1_11445,610,538 - 45,660,754 (-)NCBICHM1_1
T2T-CHM13v2.01439,395,200 - 39,445,212 (-)NCBIT2T-CHM13v2.0
Mis18bp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391265,179,508 - 65,219,363 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1265,179,508 - 65,219,378 (-)EnsemblGRCm39 Ensembl
GRCm381265,132,734 - 65,172,581 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1265,132,734 - 65,172,604 (-)EnsemblGRCm38mm10GRCm38
MGSCv371266,233,721 - 66,273,567 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361266,051,339 - 66,091,185 (-)NCBIMGSCv36mm8
Celera1266,262,434 - 66,302,397 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1227.21NCBI
Mis18bp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8688,918,743 - 88,968,225 (-)NCBIGRCr8
mRatBN7.2683,182,497 - 83,231,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl683,182,499 - 83,231,383 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx683,542,064 - 83,590,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0683,841,426 - 83,890,248 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0683,283,159 - 83,332,060 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0686,879,106 - 86,925,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl686,879,719 - 86,924,146 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0696,368,085 - 96,413,853 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4686,479,583 - 86,529,071 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera681,750,433 - 81,799,296 (-)NCBICelera
Cytogenetic Map6q24NCBI
Mis18bp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540916,710,362 - 16,750,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540916,704,414 - 16,751,469 (+)NCBIChiLan1.0ChiLan1.0
MIS18BP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21546,375,393 - 46,429,620 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11445,591,904 - 45,642,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01425,819,302 - 25,869,819 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11444,146,267 - 44,196,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1444,147,183 - 44,189,888 (-)Ensemblpanpan1.1panPan2
MIS18BP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1822,626,082 - 22,673,550 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl822,525,301 - 22,668,507 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha822,444,217 - 22,491,261 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0822,785,324 - 22,832,826 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl822,684,506 - 22,832,791 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1822,447,699 - 22,494,944 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0822,514,049 - 22,561,510 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0822,849,837 - 22,896,935 (-)NCBIUU_Cfam_GSD_1.0
Mis18bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864054,605,758 - 54,638,685 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365834,052,207 - 4,083,679 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MIS18BP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12422,329,965 - 22,385,321 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2422,344,596 - 22,378,898 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666116152,261 - 213,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mis18bp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473123,290,631 - 23,339,687 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473123,288,240 - 23,339,568 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MIS18BP1
519 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 4 1
Low 10 2 3 1 2 23 2 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005514   ⟹   ENSSSCP00000005377
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1175,401,386 - 175,448,001 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000022416   ⟹   ENSSSCP00000019773
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1175,399,406 - 175,448,254 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000023490   ⟹   ENSSSCP00000021802
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1175,401,390 - 175,448,276 (-)Ensembl
RefSeq Acc Id: XM_021101211   ⟹   XP_020956870
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11175,401,386 - 175,449,396 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101217   ⟹   XP_020956876
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11175,401,386 - 175,449,396 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021101228   ⟹   XP_020956887
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11175,401,386 - 175,449,399 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020956887   ⟸   XM_021101228
- Peptide Label: isoform X2
- UniProtKB: A0A8D1QXK0 (UniProtKB/TrEMBL),   A0A4X1SJU8 (UniProtKB/TrEMBL),   A0A8D1CHP4 (UniProtKB/TrEMBL),   A0A8D1HTS4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956876   ⟸   XM_021101217
- Peptide Label: isoform X1
- UniProtKB: A0A8D1FWE0 (UniProtKB/TrEMBL),   M3UZ41 (UniProtKB/TrEMBL),   I3LCM7 (UniProtKB/TrEMBL),   A0A4X1SJM1 (UniProtKB/TrEMBL),   A0A8D0UC74 (UniProtKB/TrEMBL),   A0A8D0Y6N9 (UniProtKB/TrEMBL),   A0A8D1HRY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020956870   ⟸   XM_021101211
- Peptide Label: isoform X1
- UniProtKB: A0A8D1FWE0 (UniProtKB/TrEMBL),   M3UZ41 (UniProtKB/TrEMBL),   I3LCM7 (UniProtKB/TrEMBL),   A0A4X1SJM1 (UniProtKB/TrEMBL),   A0A8D0UC74 (UniProtKB/TrEMBL),   A0A8D0Y6N9 (UniProtKB/TrEMBL),   A0A8D1HRY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005377   ⟸   ENSSSCT00000005514
RefSeq Acc Id: ENSSSCP00000019773   ⟸   ENSSSCT00000022416
RefSeq Acc Id: ENSSSCP00000021802   ⟸   ENSSSCT00000023490
Protein Domains
Myb-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004999 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015072989 UniProtKB/TrEMBL
  ENSSSCG00025022053 UniProtKB/TrEMBL
  ENSSSCG00030071036 UniProtKB/TrEMBL
  ENSSSCG00035012064 UniProtKB/TrEMBL
  ENSSSCG00040069922 UniProtKB/TrEMBL
  ENSSSCG00045019190 UniProtKB/TrEMBL
  ENSSSCG00050059566 UniProtKB/TrEMBL
  ENSSSCG00055015055 UniProtKB/TrEMBL
  ENSSSCG00060028533 UniProtKB/TrEMBL
  ENSSSCG00065072761 UniProtKB/TrEMBL
  ENSSSCG00070001681 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023490 ENTREZGENE
  ENSSSCT00000023490.3 UniProtKB/TrEMBL
  ENSSSCT00015098261.1 UniProtKB/TrEMBL
  ENSSSCT00025030053.1 UniProtKB/TrEMBL
  ENSSSCT00030099384.1 UniProtKB/TrEMBL
  ENSSSCT00030099399.1 UniProtKB/TrEMBL
  ENSSSCT00035015189.1 UniProtKB/TrEMBL
  ENSSSCT00040096010.1 UniProtKB/TrEMBL
  ENSSSCT00045032843.1 UniProtKB/TrEMBL
  ENSSSCT00045032939.1 UniProtKB/TrEMBL
  ENSSSCT00050081149.1 UniProtKB/TrEMBL
  ENSSSCT00055030177.1 UniProtKB/TrEMBL
  ENSSSCT00055030239.1 UniProtKB/TrEMBL
  ENSSSCT00060038603.1 UniProtKB/TrEMBL
  ENSSSCT00065100109.1 UniProtKB/TrEMBL
  ENSSSCT00065100135.1 UniProtKB/TrEMBL
  ENSSSCT00070003185.1 UniProtKB/TrEMBL
  ENSSSCT00070003197.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  KNL2-like UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANTA UniProtKB/TrEMBL
NCBI Gene MIS18BP1 ENTREZGENE
PANTHER MIS18-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PTHR16124 UniProtKB/TrEMBL
Pfam SANTA UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A4X1SJM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SJU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UC74 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Y6N9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CHP4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FWE0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HRY9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HTS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QXK0 ENTREZGENE, UniProtKB/TrEMBL
  I3LCM7 ENTREZGENE, UniProtKB/TrEMBL
  M3UZ41 ENTREZGENE
UniProt Secondary M3UZ41 UniProtKB/TrEMBL
VGNC ID VGNC:90240 ENTREZGENE