MIS18BP1 (MIS18 binding protein 1) - Rat Genome Database

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Gene: MIS18BP1 (MIS18 binding protein 1) Pan paniscus
Analyze
Symbol: MIS18BP1
Name: MIS18 binding protein 1
RGD ID: 11987769
Description: ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); FOUND IN CENP-A recruiting complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mis18-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21546,375,393 - 46,429,620 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11445,591,904 - 45,642,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01425,819,302 - 25,869,819 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11444,146,267 - 44,196,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1444,147,183 - 44,189,888 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MIS18BP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21546,375,393 - 46,429,620 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11445,591,904 - 45,642,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01425,819,302 - 25,869,819 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11444,146,267 - 44,196,076 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1444,147,183 - 44,189,888 (-)Ensemblpanpan1.1panPan2
MIS18BP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381445,203,190 - 45,253,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1445,203,190 - 45,253,540 (-)EnsemblGRCh38hg38GRCh38
GRCh371445,672,393 - 45,722,405 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361444,742,143 - 44,792,146 (-)NCBINCBI36Build 36hg18NCBI36
Build 341444,742,143 - 44,792,146NCBI
Celera1425,533,645 - 25,583,858 (-)NCBICelera
Cytogenetic Map14q21.2NCBI
HuRef1425,783,114 - 25,833,326 (-)NCBIHuRef
CHM1_11445,610,538 - 45,660,754 (-)NCBICHM1_1
T2T-CHM13v2.01439,395,200 - 39,445,212 (-)NCBIT2T-CHM13v2.0
Mis18bp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391265,179,508 - 65,219,363 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1265,179,508 - 65,219,378 (-)EnsemblGRCm39 Ensembl
GRCm381265,132,734 - 65,172,581 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1265,132,734 - 65,172,604 (-)EnsemblGRCm38mm10GRCm38
MGSCv371266,233,721 - 66,273,567 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361266,051,339 - 66,091,185 (-)NCBIMGSCv36mm8
Celera1266,262,434 - 66,302,397 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1227.21NCBI
Mis18bp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8688,918,743 - 88,968,225 (-)NCBIGRCr8
mRatBN7.2683,182,497 - 83,231,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl683,182,499 - 83,231,383 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx683,542,064 - 83,590,889 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0683,841,426 - 83,890,248 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0683,283,159 - 83,332,060 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0686,879,106 - 86,925,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl686,879,719 - 86,924,146 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0696,368,085 - 96,413,853 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4686,479,583 - 86,529,071 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera681,750,433 - 81,799,296 (-)NCBICelera
Cytogenetic Map6q24NCBI
Mis18bp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540916,710,362 - 16,750,434 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540916,704,414 - 16,751,469 (+)NCBIChiLan1.0ChiLan1.0
MIS18BP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1822,626,082 - 22,673,550 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl822,525,301 - 22,668,507 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha822,444,217 - 22,491,261 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0822,785,324 - 22,832,826 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl822,684,506 - 22,832,791 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1822,447,699 - 22,494,944 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0822,514,049 - 22,561,510 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0822,849,837 - 22,896,935 (-)NCBIUU_Cfam_GSD_1.0
Mis18bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864054,605,758 - 54,638,685 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365834,052,207 - 4,083,679 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MIS18BP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1175,401,390 - 175,448,276 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11175,401,386 - 175,449,399 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21195,196,729 - 195,219,436 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIS18BP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12422,329,965 - 22,385,321 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2422,344,596 - 22,378,898 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666116152,261 - 213,642 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mis18bp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473123,290,631 - 23,339,687 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473123,288,240 - 23,339,568 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003831752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000043817   ⟹   ENSPPAP00000021018
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1444,147,183 - 44,189,888 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000043821   ⟹   ENSPPAP00000021022
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1444,175,368 - 44,189,888 (-)Ensembl
RefSeq Acc Id: XM_003831752   ⟹   XP_003831800
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21546,375,393 - 46,429,620 (-)NCBI
NHGRI_mPanPan11445,591,904 - 45,642,997 (-)NCBI
Mhudiblu_PPA_v01425,819,302 - 25,869,819 (-)NCBI
PanPan1.11444,146,267 - 44,196,076 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000021018.1
  ENSPPAP00000021022.1
Reference Protein Sequences
RefSeq Acc Id: XP_003831800   ⟸   XM_003831752
- UniProtKB: A0A2R9AUZ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000021018   ⟸   ENSPPAT00000043817
RefSeq Acc Id: ENSPPAP00000021022   ⟸   ENSPPAT00000043821
Protein Domains
SANT   SANTA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043817.1 UniProtKB/TrEMBL
  ENSPPAT00000043821.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  KNL2-like UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  SANTA UniProtKB/TrEMBL
NCBI Gene MIS18BP1 ENTREZGENE
PANTHER MIS18-BINDING PROTEIN 1 UniProtKB/TrEMBL
  PTHR16124 UniProtKB/TrEMBL
Pfam SANTA UniProtKB/TrEMBL
PROSITE SANT UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A2R9AUP1_PANPA UniProtKB/TrEMBL
  A0A2R9AUZ2 ENTREZGENE, UniProtKB/TrEMBL