UCHL1 (ubiquitin C-terminal hydrolase L1) - Rat Genome Database

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Gene: UCHL1 (ubiquitin C-terminal hydrolase L1) Sus scrofa
Analyze
Symbol: UCHL1
Name: ubiquitin C-terminal hydrolase L1
RGD ID: 14032459
Description: ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN adult walking behavior (ortholog); axon target recognition (ortholog); axonal transport of mitochondrion (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Deglutition Disorders (ortholog); Diaphragmatic Hernia (ortholog); FOUND IN axon (inferred); axon cytoplasm (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ubiquitin C-terminal hydrolase 1; ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin carboxyl-terminal hydrolase L1; ubiquitin thioesterase L1; ubiquitin thiolesterase L1; UCH-L1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl832,353,246 - 32,367,332 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1832,353,766 - 32,367,288 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2833,970,620 - 33,982,399 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:17890291   PMID:19388011   PMID:22301074   PMID:26180514   PMID:30032202   PMID:37797697  


Genomics

Comparative Map Data
UCHL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl832,353,246 - 32,367,332 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1832,353,766 - 32,367,288 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2833,970,620 - 33,982,399 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UCHL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38441,256,928 - 41,268,455 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl441,256,413 - 41,268,455 (+)EnsemblGRCh38hg38GRCh38
GRCh37441,258,945 - 41,270,472 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36440,953,686 - 40,965,203 (+)NCBINCBI36Build 36hg18NCBI36
Build 34441,099,856 - 41,111,373NCBI
Celera441,702,199 - 41,713,746 (+)NCBICelera
Cytogenetic Map4p13NCBI
HuRef440,580,844 - 40,592,391 (+)NCBIHuRef
CHM1_1441,259,044 - 41,270,591 (+)NCBICHM1_1
T2T-CHM13v2.0441,230,716 - 41,242,242 (+)NCBIT2T-CHM13v2.0
Uchl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39566,833,464 - 66,844,577 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl566,833,434 - 66,844,577 (+)EnsemblGRCm39 Ensembl
GRCm38566,676,121 - 66,687,234 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl566,676,091 - 66,687,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv37567,067,360 - 67,078,473 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36566,955,425 - 66,966,369 (+)NCBIMGSCv36mm8
Celera563,976,841 - 63,987,914 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map535.95NCBI
Uchl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81441,838,859 - 41,849,743 (-)NCBIGRCr8
mRatBN7.21441,485,031 - 41,495,590 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1441,485,031 - 41,495,590 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1441,831,048 - 41,841,616 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01443,131,128 - 43,141,696 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01441,611,942 - 41,622,510 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01443,133,224 - 43,143,942 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1443,133,218 - 43,143,973 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,928,247 - 42,938,981 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41444,114,392 - 44,124,947 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11444,116,782 - 44,127,338 (-)NCBI
Celera1440,639,549 - 40,650,302 (-)NCBICelera
Cytogenetic Map14p11NCBI
Uchl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554436,367,460 - 6,380,462 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554436,367,519 - 6,379,638 (-)NCBIChiLan1.0ChiLan1.0
UCHL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2341,440,064 - 41,451,601 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1441,633,489 - 41,645,029 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0435,580,755 - 35,592,314 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1441,432,367 - 41,440,129 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl441,428,759 - 41,440,129 (+)Ensemblpanpan1.1panPan2
UCHL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,396,694 - 71,430,395 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,370,822 - 71,411,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha373,946,978 - 73,961,370 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0372,157,557 - 72,171,966 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1371,427,585 - 71,441,983 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,589,640 - 71,604,050 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,972,745 - 71,987,146 (-)NCBIUU_Cfam_GSD_1.0
Uchl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528537,734,649 - 37,746,530 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364828,551,603 - 8,563,651 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364828,551,749 - 8,563,586 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCHL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1279,074,961 - 9,086,606 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl279,074,923 - 9,086,517 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604755,406,774 - 55,418,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uchl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476125,784,257 - 25,797,549 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476125,786,028 - 25,797,641 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UCHL1
512 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system
High
Medium 1 3 23
Low 8 1 2 2 2
Below cutoff 1 3 2

Sequence


RefSeq Acc Id: ENSSSCT00000024016   ⟹   ENSSSCP00000020119
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl832,353,246 - 32,367,322 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000086484   ⟹   ENSSSCP00000074323
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl832,353,246 - 32,367,322 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087488   ⟹   ENSSSCP00000064732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl832,353,735 - 32,367,332 (+)Ensembl
RefSeq Acc Id: NM_213763   ⟹   NP_998928
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1832,353,766 - 32,367,288 (+)NCBI
Sequence:
RefSeq Acc Id: NP_998928   ⟸   NM_213763
- UniProtKB: Q6SEG5 (UniProtKB/Swiss-Prot),   A0A480NR20 (UniProtKB/TrEMBL),   A0A4X1UY24 (UniProtKB/TrEMBL),   A0A5G2QRS7 (UniProtKB/TrEMBL),   A0A8D1UNL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000074323   ⟸   ENSSSCT00000086484
RefSeq Acc Id: ENSSSCP00000064732   ⟸   ENSSSCT00000087488
RefSeq Acc Id: ENSSSCP00000020119   ⟸   ENSSSCT00000024016

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000022945 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005006699 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00015069621 UniProtKB/TrEMBL
  ENSSSCG00025063300 UniProtKB/TrEMBL
  ENSSSCG00030023051 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00035035799 UniProtKB/TrEMBL
  ENSSSCG00040045613 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045028998 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00050067225 UniProtKB/TrEMBL
  ENSSSCG00055019353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00060020765 UniProtKB/TrEMBL
  ENSSSCG00065051563 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00070020275 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024016 ENTREZGENE
  ENSSSCT00000024016.3 UniProtKB/Swiss-Prot
  ENSSSCT00000086484.1 UniProtKB/TrEMBL
  ENSSSCT00000087488.2 UniProtKB/TrEMBL
  ENSSSCT00005010221.1 UniProtKB/Swiss-Prot
  ENSSSCT00005010279.1 UniProtKB/TrEMBL
  ENSSSCT00005010518.1 UniProtKB/TrEMBL
  ENSSSCT00005010558.1 UniProtKB/TrEMBL
  ENSSSCT00015093362.1 UniProtKB/TrEMBL
  ENSSSCT00015093445.1 UniProtKB/TrEMBL
  ENSSSCT00015093700.1 UniProtKB/TrEMBL
  ENSSSCT00025086731.1 UniProtKB/TrEMBL
  ENSSSCT00025086920.1 UniProtKB/TrEMBL
  ENSSSCT00025087074.1 UniProtKB/TrEMBL
  ENSSSCT00030032027.1 UniProtKB/Swiss-Prot
  ENSSSCT00030032029.1 UniProtKB/TrEMBL
  ENSSSCT00030032038.1 UniProtKB/TrEMBL
  ENSSSCT00035047457.1 UniProtKB/TrEMBL
  ENSSSCT00035047470.1 UniProtKB/TrEMBL
  ENSSSCT00035047479.1 UniProtKB/TrEMBL
  ENSSSCT00040061307.1 UniProtKB/Swiss-Prot
  ENSSSCT00040061399.1 UniProtKB/TrEMBL
  ENSSSCT00040061505.1 UniProtKB/TrEMBL
  ENSSSCT00045049551.1 UniProtKB/Swiss-Prot
  ENSSSCT00045049656.1 UniProtKB/TrEMBL
  ENSSSCT00045049791.1 UniProtKB/TrEMBL
  ENSSSCT00050091676.1 UniProtKB/TrEMBL
  ENSSSCT00050091685.1 UniProtKB/TrEMBL
  ENSSSCT00050091697.1 UniProtKB/TrEMBL
  ENSSSCT00055038407.1 UniProtKB/Swiss-Prot
  ENSSSCT00055038511.1 UniProtKB/TrEMBL
  ENSSSCT00055038584.1 UniProtKB/TrEMBL
  ENSSSCT00060028149.1 UniProtKB/TrEMBL
  ENSSSCT00060028168.1 UniProtKB/TrEMBL
  ENSSSCT00060028182.1 UniProtKB/TrEMBL
  ENSSSCT00060028196.1 UniProtKB/TrEMBL
  ENSSSCT00065070629.1 UniProtKB/Swiss-Prot
  ENSSSCT00065070634.1 UniProtKB/TrEMBL
  ENSSSCT00065070642.1 UniProtKB/TrEMBL
  ENSSSCT00070040223.1 UniProtKB/TrEMBL
  ENSSSCT00070040230.1 UniProtKB/Swiss-Prot
  ENSSSCT00070040236.1 UniProtKB/TrEMBL
  ENSSSCT00070040238.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.532.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C12_UCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C12_UCH_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:396637 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene UCHL1 ENTREZGENE
PANTHER PTHR10589 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10589:SF19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Peptidase_C12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS UBCTHYDRLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE UCH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A480NR20 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UWB5_PIG UniProtKB/TrEMBL
  A0A4X1UY24 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UYC2_PIG UniProtKB/TrEMBL
  A0A5G2QRS7 ENTREZGENE
  A0A8D0I7W7_PIG UniProtKB/TrEMBL
  A0A8D0PU79_PIG UniProtKB/TrEMBL
  A0A8D0PX61_PIG UniProtKB/TrEMBL
  A0A8D1UNL1_PIG UniProtKB/TrEMBL
  A0A8D1UNL8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Z2R1_PIG UniProtKB/TrEMBL
  Q6SEG5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A5G2QRS7 UniProtKB/TrEMBL
  A0A5G2RGW1 UniProtKB/TrEMBL
VGNC ID VGNC:94680 ENTREZGENE