TMEM221 (transmembrane protein 221) - Rat Genome Database

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Gene: TMEM221 (transmembrane protein 221) Sus scrofa
Analyze
Symbol: TMEM221
Name: transmembrane protein 221
RGD ID: 14014111
Description: FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,256,487 - 60,263,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,256,477 - 60,264,026 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,719,285 - 59,726,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
TMEM221
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,256,487 - 60,263,915 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,256,477 - 60,264,026 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,719,285 - 59,726,739 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM221
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,435,509 - 17,448,668 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,435,509 - 17,448,668 (-)EnsemblGRCh38hg38GRCh38
GRCh371917,546,318 - 17,559,477 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,408,267 - 17,420,493 (-)NCBINCBI36Build 36hg18NCBI36
Celera1917,448,072 - 17,461,124 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,112,238 - 17,125,017 (-)NCBIHuRef
CHM1_11917,545,819 - 17,558,888 (-)NCBICHM1_1
T2T-CHM13v2.01917,570,277 - 17,583,426 (-)NCBIT2T-CHM13v2.0
Tmem221
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39872,006,947 - 72,011,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl872,006,882 - 72,011,515 (-)EnsemblGRCm39 Ensembl
GRCm38871,554,303 - 71,559,015 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,554,238 - 71,558,871 (-)EnsemblGRCm38mm10GRCm38
MGSCv37874,078,202 - 74,082,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,483,220 - 74,487,965 (-)NCBIMGSCv36mm8
Celera874,065,000 - 74,069,568 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Tmem221
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,296,036 - 18,305,077 (-)NCBIGRCr8
mRatBN7.21618,253,622 - 18,271,094 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,262,052 - 18,266,967 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01619,984,368 - 19,992,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,984,301 - 19,988,004 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,843,726 - 19,850,930 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,737,596 - 18,741,584 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1618,467,034 - 18,475,546 (-)NCBICelera
Cytogenetic Map16p14NCBI
Tmem221
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955524830,555 - 839,089 (+)NCBIChiLan1.0ChiLan1.0
TMEM221
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,304,279 - 22,323,633 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,301,561 - 21,330,169 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,922,770 - 16,936,459 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,895,562 - 17,909,597 (-)NCBIpanpan1.1PanPan1.1panPan2
TMEM221
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,353,366 - 45,361,175 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,267,185 - 45,275,015 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,840,535 - 45,848,323 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,840,149 - 45,847,512 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,076,930 - 45,084,679 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,486,723 - 45,494,548 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,762,751 - 45,770,574 (+)NCBIUU_Cfam_GSD_1.0
Tmem221
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,914,176 - 203,918,250 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365963,452,433 - 3,467,389 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM221
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,930,946 - 15,938,414 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,931,893 - 15,938,065 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,495,366 - 3,508,225 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem221
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908555,619 - 561,932 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908555,619 - 562,318 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM221
93 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system reproductive system
High
Medium
Low 3 3 1
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000093310   ⟹   ENSSSCP00000076399
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl260,256,487 - 60,263,915 (+)Ensembl
RefSeq Acc Id: XM_003123492   ⟹   XP_003123540
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1260,256,477 - 60,263,919 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003354135   ⟹   XP_003354183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1260,256,477 - 60,264,026 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003354183   ⟸   XM_003354135
- Peptide Label: isoform X1
- UniProtKB: A0A287B9L8 (UniProtKB/TrEMBL),   A0A8D1TN21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003123540   ⟸   XM_003123492
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000076399   ⟸   ENSSSCT00000093310


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000059815 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015013217 UniProtKB/TrEMBL
  ENSSSCG00025016160 UniProtKB/TrEMBL
  ENSSSCG00030041411 UniProtKB/TrEMBL
  ENSSSCG00035027439 UniProtKB/TrEMBL
  ENSSSCG00040044870 UniProtKB/TrEMBL
  ENSSSCG00045037666 UniProtKB/TrEMBL
  ENSSSCG00050068126 UniProtKB/TrEMBL
  ENSSSCG00055028359 UniProtKB/TrEMBL
  ENSSSCG00060021828 UniProtKB/TrEMBL
  ENSSSCG00065004943 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000093310 ENTREZGENE
  ENSSSCT00000093310.1 UniProtKB/TrEMBL
  ENSSSCT00015017477.1 UniProtKB/TrEMBL
  ENSSSCT00025021671.1 UniProtKB/TrEMBL
  ENSSSCT00030057514.1 UniProtKB/TrEMBL
  ENSSSCT00035036263.1 UniProtKB/TrEMBL
  ENSSSCT00040060191.1 UniProtKB/TrEMBL
  ENSSSCT00045065068.1 UniProtKB/TrEMBL
  ENSSSCT00050092959.1 UniProtKB/TrEMBL
  ENSSSCT00055056198.1 UniProtKB/TrEMBL
  ENSSSCT00060029583.1 UniProtKB/TrEMBL
  ENSSSCT00065006730.1 UniProtKB/TrEMBL
InterPro Jiraiya UniProtKB/TrEMBL
NCBI Gene TMEM221 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 221 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 221 UniProtKB/TrEMBL
Pfam Jiraiya UniProtKB/TrEMBL
UniProt A0A287B9L8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TN21 ENTREZGENE, UniProtKB/TrEMBL