| Gene: TMEM221 (transmembrane protein 221) Canis lupus familiaris |
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Analyze |
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| Symbol: |
TMEM221 |
| Name: |
transmembrane protein 221 |
| RGD ID: |
12142068 |
| Description: |
FOUND IN membrane (inferred) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
CanFam3.1 - Dog CanFam3.1 Assembly |
| Position: |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 20 | 45,353,366 - 45,361,175 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 20 | 45,267,185 - 45,275,015 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 20 | 45,840,535 - 45,848,323 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 20 | 45,840,149 - 45,847,512 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 20 | 45,076,930 - 45,084,679 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 20 | 45,486,723 - 45,494,548 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 20 | 45,762,751 - 45,770,574 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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References
Genomics
Comparative Map Data
TMEM221
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 20 | 45,353,366 - 45,361,175 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 20 | 45,267,185 - 45,275,015 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 20 | 45,840,535 - 45,848,323 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 20 | 45,840,149 - 45,847,512 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 20 | 45,076,930 - 45,084,679 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 20 | 45,486,723 - 45,494,548 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 20 | 45,762,751 - 45,770,574 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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TMEM221
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 19 | 17,435,509 - 17,448,668 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 17,435,509 - 17,448,668 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 19 | 17,546,318 - 17,559,477 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 19 | 17,408,267 - 17,420,493 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 19 | 17,448,072 - 17,461,124 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | p13.11 | NCBI | | | | | HuRef | 19 | 17,112,238 - 17,125,017 (-) | NCBI | | HuRef | | | CHM1_1 | 19 | 17,545,819 - 17,558,888 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 17,570,277 - 17,583,426 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Tmem221
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 8 | 72,006,947 - 72,011,659 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 8 | 72,006,882 - 72,011,515 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 8 | 71,554,303 - 71,559,015 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 8 | 71,554,238 - 71,558,871 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 8 | 74,078,202 - 74,082,770 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 8 | 74,483,220 - 74,487,965 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 8 | 74,065,000 - 74,069,568 (-) | NCBI | | Celera | | | Cytogenetic Map | 8 | B3.3 | NCBI | | | | | cM Map | 8 | 34.43 | NCBI | | | | |
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Tmem221
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 16 | 18,296,036 - 18,305,077 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 16 | 18,253,622 - 18,271,094 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 16 | 18,262,052 - 18,266,967 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 16 | 19,984,368 - 19,992,507 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 16 | 19,984,301 - 19,988,004 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 16 | 19,843,726 - 19,850,930 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 16 | 18,737,596 - 18,741,584 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 16 | 18,467,034 - 18,475,546 (-) | NCBI | | Celera | | | Cytogenetic Map | 16 | p14 | NCBI | | | | |
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Tmem221
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 | NW_004955524 | 830,555 - 839,089 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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TMEM221
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 20 | 22,304,279 - 22,323,633 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 19 | 21,301,561 - 21,330,169 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 19 | 16,922,770 - 16,936,459 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 19 | 17,895,562 - 17,909,597 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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Tmem221
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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TMEM221
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 2 | 60,256,487 - 60,263,915 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 2 | 60,256,477 - 60,264,026 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 2 | 59,719,285 - 59,726,739 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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TMEM221
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 6 | 15,930,946 - 15,938,414 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 6 | 15,931,893 - 15,938,065 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666074 | 3,495,366 - 3,508,225 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Tmem221
(Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
reproductive system |
respiratory system |
adipose tissue |
| High |
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| Medium |
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1
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| Low |
2
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1
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12
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5
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10
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8
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6
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6
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| Below cutoff |
3
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4
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10
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6
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6
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6
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6
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2
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4
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Sequence
| RefSeq Acc Id: |
ENSCAFT00845048664 ⟹ ENSCAFP00845038176 |
| Type: |
CODING |
| Position: |
| Dog Assembly | Chr | Position (strand) | Source |
|---|
ROS_Cfam_1.0 Ensembl | 20 | 45,840,149 - 45,847,512 (+) | Ensembl |
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| RefSeq Acc Id: |
XM_003432898 ⟹ XP_003432946 |
| Type: |
CODING |
| Position: |
| Dog Assembly | Chr | Position (strand) | Source |
|---|
CanFam3.1 | 20 | 45,353,366 - 45,361,175 (+) | NCBI | Dog10K_Boxer_Tasha | 20 | 45,267,185 - 45,275,015 (+) | NCBI |
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| Sequence: |
ATGGCCCGGTCGTACGGCGGCCGGGTGCTGGCCGCGATGACCCTGCTGGGCATCCCGGCGGCCG
TGCTGGCGGCGCTGGGAGCGCAGCTGCTGTTCCAGCTGCAGGCGGGCCGCGCGGAGCTTCGGGG
GCTGCGCGCCGACGGGCTGGGCCCCGAGCTGGGCGGCGGCCCCGGGCTGCCCGAGGACGCGGCC
GGGGCGCTGCTGCCGCTGGCCGCCGCGCTCGCCGCGCTCGCCCTGGTGCTGGGCCTCACCTGCC
TTCTGCTCGCCGCGCTCTGCGGCCATCTGGGCGCCGAGCTGGCGCGGGGGCCTGGCCCCGGCAG
GTCTGACTGGTTTCTCTATGACTGCCGTCTCCTCAGACACGTGGCCCTTGGTGTTTTCTGCTGT
GGCGTCTCCGTCTACTTAGCAGCACTGTCCATCTATGCCTTGCTGCTCTTTGAGATCGAGACAG
GTGCGGCCGCCGCCTCCATCCTCGGAGTGGGTGCTCTGGTGCTGGTGGCGGCGCTCACCCACAC
TCTGCTCCGGGCTGCCCGGGCCACCCGCCGTAGCCTCCATGAACTGTCTCCACCGCACTTTGAA
GACGACCCTGTCCGCCCTGCTGAAGTCTCCAAGGCCAGCCCCAGGGCTCAGCCCCAGCAGGGTA
CCCACCACCGGACCCCCTACTCATCCTTCCCAGAATCTGGGGACCCCTTCAGACCCACGGGCAC
TGCTACAGCACCTGCAGCCCTGGGGGGAGGCCGGGAGAGCAGCCTGCCTTTACCCCGCATGCAC
CGGACTCTGTCTGCTGGCAGGCGGCACTGGGAAGTGGTCACCCACGAGATGCGCAGCATGCTGG
GCCACCGGCCAGGGGCCTCGGGGAAGGACTCCACACTAGTGTGAACCCAAGGATCAGAGATAGT
GACCTGGTGTCAGGCCTGCTGCCTGACAGAGAGGTCCAGACTCAACCACAGTAATATGACTTGA
TTTCTCAGTTCACAGCATCCCTGGCTTGTGTCCTCAAGGCTGCTTCATGGCACAAAGCGGCTGC
CAGTGCTCTAGCCTTCACCTCCTCCCTCAGAGGGAAAGGCAGAGGCCAAGGGGTGGGGGGCTCA
GCATCTTCTAGAAATCTTTCTAGGAGGCCTTGGGACCCTCCTGCTTATATCTCACTGGCAAAAA
CAGAGTCACGTGGCCACATCTCCAGGCAGGAAAGGCTGGGAAATGTAGCTGTCAGATGTTAGAG
GCAGGAGGGGAGGGTTGGGTTTAAACAGTGATTCTCTAAATGTCTCCATCCGTTTTACAGATGA
GGAAACCGAGGTCCAGAGAGGGGCAGTGACTCACCAGGAGTCCCATGGCCAGTACTGAGCGTCA
GAGTCAGGATTCGAACCCGGGTTCTCTAACCCCCATGCTGCTGACAGTGCAAGTCTCAGACTCT
GCGACTTCTTCCGGGCTGTGAGCATTTGAAATCTGTGTGTGCTGAGCTCAGAGCAGCCCAGGGC
CACAGGGGCCCCTGGAGGGCTGGACCCCCTTCTGGCTGTGGGCCCCTGGCCGAGGGCTTTGCTG
CGCTGTGTCTCAGTTTCCTTGTCTATAAAATGGGGACAGAAGCAGTTCCTCCACCTAGGGCTCC
TGTGAGACTCAATGTAAACCATTCCAGGTGCCTGTGCACAGTAGGTCCTCAATACATGCCAACC
TCTGCTGTCATCATTCAGGGCCCCTGGTGGCAGGAAAAGGGGGGTTGATGGCCACTTTCTGGGG
CTCATGAAACTGGCAAGGCTTAGACTGGATAACTCAGAGCCCCAGAGGGGACGCCTGGGTGGCT
CAGAGGTTGAGCATCTGTCTTCAGCTCAGGGCATGATCCCAGGGCCCGGGATCGAGTCCCACAT
CAGGCTCCCTGCAGGGAGCCCGCTTCTCCCTCTGCCTATGTCTCTGCCTCTCTCTCTGTGTCTC
TCATGAATAAACAAATAAAATCTTAAAAAAACACACAAACAAACTTGGAGCCCTAGGGATCTCC
AGAGGCCCTGGTCCCACTCCCATCCCACATGACCTTCACGACCCTCAAATAAACTCCAACCTTC
ACTATCACCTTTGTCACTTGAGCCACATCCAAACATGCTGTGTGGTCAAGCCCAGGCCCAGCAT
GATGGGTGGAGTCACAGGAGTGGGATGTGGAGGCTGAAGTGGGGTACAAGGGTGTACTCTTTAT
AGACCCCAGTCGGGGCCCATGTCCTACAAATCTCCATGCATATAAATTTCACTAGGGGTGGGAA
TGCCTGGCCTCCACCCTCACCCCAAATGGACAGATGTCCCCAGAATTCTCCCAGTGGGTCCCTT
CCTGGGCCATACAGGCACTCTGAGGCCCAGGGAGAGGAGCAGCTCAGCCACAAAGTGGCTTAAA
ACCCCCCTGGGGCCTTTTCTAATGGAGAGAGAGGTAACAGTGCCCAGTGGGGAGGGGGGGCTCC
TCTCCTAAATCTGACCCTGGCAGGGACCCTGCTGATCCAATACACCCAGACCCTAGTGGCCCAC
TGACCCCAATTCCAGCTGCCTCCTCCCAGAGCCACTGGGAAGCTGCAGAGACCTCTTTGCTGGT
GGAATGAAGTGGAGAGATAATACACATGAACATCCCATGTGGCGCCTGACATGTGGGGCACCCA
ATAAGCATGGGTTCTCGGGGAGCATAATAAATATCAATGAAAAAGATAAAATAAGAATAAATTT
TGGGGCAGCCCTTGTGGTCCAGCAGTTTAGTGACCGCCTTTGGCCCAGGGCATGATCCTGGAGA
CCCAGGATCGAGTCCCGCATCAGGCTCCCTGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTC
TGCCTTCCT
hide sequence
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| RefSeq Acc Id: |
XM_038426572 ⟹ XP_038282500 |
| Type: |
CODING |
| Position: |
| Dog Assembly | Chr | Position (strand) | Source |
|---|
ROS_Cfam_1.0 | 20 | 45,840,535 - 45,848,323 (+) | NCBI |
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| RefSeq Acc Id: |
XM_038505026 ⟹ XP_038360954 |
| Type: |
CODING |
| Position: |
| Dog Assembly | Chr | Position (strand) | Source |
|---|
UMICH_Zoey_3.1 | 20 | 45,076,930 - 45,084,679 (+) | NCBI |
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| RefSeq Acc Id: |
XM_038565299 ⟹ XP_038421227 |
| Type: |
CODING |
| Position: |
| Dog Assembly | Chr | Position (strand) | Source |
|---|
UU_Cfam_GSD_1.0 | 20 | 45,762,751 - 45,770,574 (+) | NCBI |
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| RefSeq Acc Id: |
XM_038629419 ⟹ XP_038485347 |
| Type: |
CODING |
| Position: |
| Dog Assembly | Chr | Position (strand) | Source |
|---|
UNSW_CanFamBas_1.0 | 20 | 45,486,723 - 45,494,548 (+) | NCBI |
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| RefSeq Acc Id: |
XP_003432946 ⟸ XM_003432898 |
| - UniProtKB: |
A0A8C0K987 (UniProtKB/TrEMBL), A0A8P0NGZ1 (UniProtKB/TrEMBL), A0A8C0SN51 (UniProtKB/TrEMBL) |
| - Sequence: |
MARSYGGRVLAAMTLLGIPAAVLAALGAQLLFQLQAGRAELRGLRADGLGPELGGGPGLPEDAA
GALLPLAAALAALALVLGLTCLLLAALCGHLGAELARGPGPGRSDWFLYDCRLLRHVALGVFCC
GVSVYLAALSIYALLLFEIETGAAAASILGVGALVLVAALTHTLLRAARATRRSLHELSPPHFE
DDPVRPAEVSKASPRAQPQQGTHHRTPYSSFPESGDPFRPTGTATAPAALGGGRESSLPLPRMH
RTLSAGRRHWEVVTHEMRSMLGHRPGASGKDSTLV
hide sequence
|
| RefSeq Acc Id: |
XP_038360954 ⟸ XM_038505026 |
| RefSeq Acc Id: |
XP_038485347 ⟸ XM_038629419 |
| RefSeq Acc Id: |
XP_038282500 ⟸ XM_038426572 |
| - UniProtKB: |
A0A8I3SAX4 (UniProtKB/TrEMBL), A0A8C0SN51 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: |
XP_038421227 ⟸ XM_038565299 |
| - UniProtKB: |
A0A8C0P4X5 (UniProtKB/TrEMBL), A0A8C0SN51 (UniProtKB/TrEMBL) |
| RefSeq Acc Id: |
ENSCAFP00845038176 ⟸ ENSCAFT00845048664 |
Additional Information
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