NUP160 (nucleoporin 160) - Rat Genome Database

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Gene: NUP160 (nucleoporin 160) Sus scrofa
Analyze
Symbol: NUP160
Name: nucleoporin 160
RGD ID: 13997102
Description: ENCODES a protein that exhibits structural constituent of nuclear pore (inferred); INVOLVED IN nephron development (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIc (ortholog); intellectual disability (ortholog); nephrotic syndrome type 19 (ortholog); FOUND IN kinetochore (ortholog); nuclear envelope (ortholog); nuclear pore outer ring (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore complex protein Nup160
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,840,410 - 14,891,677 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,840,056 - 14,891,567 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2215,900,356 - 15,956,637 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NUP160
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,840,410 - 14,891,677 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1214,840,056 - 14,891,567 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2215,900,356 - 15,956,637 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP160
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,778,118 - 47,848,544 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,778,087 - 47,848,555 (-)EnsemblGRCh38hg38GRCh38
GRCh371147,799,670 - 47,870,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,756,246 - 47,826,633 (-)NCBINCBI36Build 36hg18NCBI36
Build 341147,756,245 - 47,826,633NCBI
Celera1147,947,516 - 48,018,167 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,505,182 - 47,575,824 (-)NCBIHuRef
CHM1_11147,798,918 - 47,869,361 (-)NCBICHM1_1
T2T-CHM13v2.01147,943,085 - 48,013,487 (-)NCBIT2T-CHM13v2.0
Nup160
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,504,405 - 90,570,217 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,507,559 - 90,566,672 (+)EnsemblGRCm39 Ensembl
GRCm38290,677,215 - 90,739,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,677,215 - 90,736,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37290,517,372 - 90,576,485 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36290,478,054 - 90,537,167 (+)NCBIMGSCv36mm8
Celera292,062,066 - 92,121,100 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.32NCBI
Nup160
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,120,723 - 97,183,227 (+)NCBIGRCr8
mRatBN7.2376,665,786 - 76,729,296 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,665,786 - 76,724,565 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx380,143,146 - 80,201,929 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0388,741,649 - 88,800,430 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0386,592,941 - 86,652,026 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0379,496,239 - 79,562,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,498,179 - 79,551,128 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0386,204,592 - 86,269,042 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4375,041,873 - 75,102,540 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1374,970,326 - 74,998,135 (+)NCBI
Celera375,875,233 - 75,933,741 (+)NCBICelera
Cytogenetic Map3q24NCBI
Nup160
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955422561,339 - 599,575 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955422561,339 - 598,598 (+)NCBIChiLan1.0ChiLan1.0
NUP160
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,987,480 - 50,062,376 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11150,007,198 - 50,081,343 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,732,678 - 47,805,906 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,281,953 - 48,352,998 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,281,972 - 48,352,998 (-)Ensemblpanpan1.1panPan2
NUP160
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,859,697 - 41,902,677 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,855,670 - 41,902,247 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,609,926 - 40,634,280 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,534,197 - 42,558,608 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11842,022,368 - 42,046,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,575,386 - 41,599,418 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,305,224 - 42,329,648 (+)NCBIUU_Cfam_GSD_1.0
Nup160
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,324,045 - 19,379,797 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,435,973 - 1,490,890 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,435,938 - 1,491,439 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP160
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,468,783 - 17,540,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,469,576 - 17,541,117 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038114,754,777 - 114,826,796 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup160
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,099,760 - 1,141,914 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247671,099,824 - 1,139,179 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NUP160
1465 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 3 1
Low 10 3 3 2 2 23 2 3 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000014443   ⟹   ENSSSCP00000014051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl214,840,410 - 14,891,677 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000098601   ⟹   ENSSSCP00000078808
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl214,840,703 - 14,890,912 (+)Ensembl
RefSeq Acc Id: XM_021085052   ⟹   XP_020940711
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1214,840,056 - 14,891,567 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020940711   ⟸   XM_021085052
- UniProtKB: F1SIF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000014051   ⟸   ENSSSCT00000014443
RefSeq Acc Id: ENSSSCP00000078808   ⟸   ENSSSCT00000098601


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013223 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015070420 UniProtKB/TrEMBL
  ENSSSCG00030021271 UniProtKB/TrEMBL
  ENSSSCG00035027847 UniProtKB/TrEMBL
  ENSSSCG00040065435 UniProtKB/TrEMBL
  ENSSSCG00045037700 UniProtKB/TrEMBL
  ENSSSCG00050006884 UniProtKB/TrEMBL
  ENSSSCG00055019589 UniProtKB/TrEMBL
  ENSSSCG00060027037 UniProtKB/TrEMBL
  ENSSSCG00065058810 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014443 ENTREZGENE
  ENSSSCT00000014443.5 UniProtKB/TrEMBL
  ENSSSCT00000098601.1 UniProtKB/TrEMBL
  ENSSSCT00015094433.1 UniProtKB/TrEMBL
  ENSSSCT00030029491.1 UniProtKB/TrEMBL
  ENSSSCT00030029537.1 UniProtKB/TrEMBL
  ENSSSCT00035036844.1 UniProtKB/TrEMBL
  ENSSSCT00035036864.1 UniProtKB/TrEMBL
  ENSSSCT00035036893.1 UniProtKB/TrEMBL
  ENSSSCT00040089394.1 UniProtKB/TrEMBL
  ENSSSCT00040089724.1 UniProtKB/TrEMBL
  ENSSSCT00040090021.1 UniProtKB/TrEMBL
  ENSSSCT00045065320.1 UniProtKB/TrEMBL
  ENSSSCT00045065406.1 UniProtKB/TrEMBL
  ENSSSCT00050009416.1 UniProtKB/TrEMBL
  ENSSSCT00050009429.1 UniProtKB/TrEMBL
  ENSSSCT00055038844.1 UniProtKB/TrEMBL
  ENSSSCT00060036613.1 UniProtKB/TrEMBL
  ENSSSCT00065080477.1 UniProtKB/TrEMBL
InterPro Nucleoporin_Nup160 UniProtKB/TrEMBL
NCBI Gene NUP160 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP160 UniProtKB/TrEMBL
  PTHR21286 UniProtKB/TrEMBL
Pfam Nup160 UniProtKB/TrEMBL
UniProt A0A8D0PUQ1_PIG UniProtKB/TrEMBL
  A0A8D0ZCF1_PIG UniProtKB/TrEMBL
  A0A8D0ZGR2_PIG UniProtKB/TrEMBL
  A0A8D1CR42_PIG UniProtKB/TrEMBL
  A0A8D1FJ89_PIG UniProtKB/TrEMBL
  A0A8D1J7F7_PIG UniProtKB/TrEMBL
  A0A8D1LDM8_PIG UniProtKB/TrEMBL
  A0A8W4FHV1_PIG UniProtKB/TrEMBL
  F1SIF8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90975 ENTREZGENE