SCNN1A (sodium channel epithelial 1 subunit alpha) - Rat Genome Database

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Gene: SCNN1A (sodium channel epithelial 1 subunit alpha) Sus scrofa
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Symbol: SCNN1A
Name: sodium channel epithelial 1 subunit alpha
RGD ID: 13993421
Description: ENCODES a protein that exhibits actin binding (ortholog); ligand-gated sodium channel activity (ortholog); sodium channel activity (ortholog); INVOLVED IN cellular response to aldosterone (ortholog); regulation of body fluid levels (ortholog); sodium ion transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant familial periodic fever (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); FOUND IN apical plasma membrane (ortholog); cortical actin cytoskeleton (ortholog); sodium channel complex (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: alpha-subunit renal epithelial sodium channel; amiloride-sensitive sodium channel subunit alpha; sodium channel epithelial 1 alpha subunit; sodium channel, non-voltage-gated 1 alpha subunit; sodium channel, nonvoltage-gated 1 alpha
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,285,015 - 64,313,612 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,287,529 - 64,312,917 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,749,072 - 66,773,949 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SCNN1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,285,015 - 64,313,612 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,287,529 - 64,312,917 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,749,072 - 66,773,949 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCNN1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,346,847 - 6,377,359 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,346,843 - 6,377,730 (-)EnsemblGRCh38hg38GRCh38
GRCh37126,456,013 - 6,486,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,326,274 - 6,354,976 (-)NCBINCBI36Build 36hg18NCBI36
Build 34126,326,275 - 6,354,976NCBI
Celera128,072,686 - 8,103,776 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,309,328 - 6,340,388 (-)NCBIHuRef
CHM1_1126,455,271 - 6,485,705 (-)NCBICHM1_1
T2T-CHM13v2.0126,356,269 - 6,387,417 (-)NCBIT2T-CHM13v2.0
Scnn1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,286,657 - 125,321,906 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6125,297,622 - 125,321,906 (+)EnsemblGRCm39 Ensembl
GRCm386125,314,271 - 125,344,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,320,659 - 125,344,943 (+)EnsemblGRCm38mm10GRCm38
MGSCv376125,271,358 - 125,294,961 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366125,287,472 - 125,310,562 (+)NCBIMGSCv36mm8
Celera6126,992,384 - 127,015,966 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map659.32NCBI
Scnn1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,809,187 - 159,832,409 (+)NCBIGRCr8
mRatBN7.24158,122,962 - 158,146,184 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4158,122,962 - 158,146,181 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4164,352,580 - 164,375,779 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04160,135,500 - 160,158,705 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,774,454 - 158,797,542 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,834,339 - 157,860,472 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,836,912 - 157,860,049 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,853,710 - 224,877,459 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,445,936 - 161,469,267 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,690,871 - 161,714,200 (+)NCBI
Celera4146,859,208 - 146,882,414 (+)NCBICelera
RH 3.4 Map41000.7RGD
Cytogenetic Map4q42NCBI
Scnn1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554133,999,613 - 4,023,596 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,000,083 - 4,023,596 (-)NCBIChiLan1.0ChiLan1.0
SCNN1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21011,906,576 - 11,936,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11211,903,334 - 11,934,030 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,475,723 - 6,506,443 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,392,354 - 6,423,118 (-)NCBIpanpan1.1PanPan1.1panPan2
SCNN1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,612,206 - 38,638,212 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,612,194 - 38,638,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha277,976,259 - 8,002,278 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,968,240 - 38,994,329 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,969,121 - 38,994,321 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,840,880 - 38,866,869 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,882,321 - 38,908,328 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,455,013 - 7,481,038 (-)NCBIUU_Cfam_GSD_1.0
Scnn1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,703,982 - 102,735,845 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,377,831 - 1,403,833 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,377,852 - 1,403,398 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCNN1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,384,073 - 6,418,620 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,383,956 - 6,416,337 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,817,244 - 1,851,507 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scnn1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,126,379 - 3,145,043 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,123,676 - 3,152,217 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SCNN1A
964 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2
Low 5 3 1 3 2 1 1
Below cutoff 3 2 4 1 7 1

Sequence


RefSeq Acc Id: ENSSSCT00000000769   ⟹   ENSSSCP00000000753
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl564,288,231 - 64,313,612 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000040390   ⟹   ENSSSCP00000041406
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl564,287,630 - 64,313,608 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000044695   ⟹   ENSSSCP00000037327
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl564,285,015 - 64,313,608 (+)Ensembl
RefSeq Acc Id: NM_213758   ⟹   NP_998923
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1564,287,696 - 64,312,573 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021091106   ⟹   XP_020946765
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1564,287,529 - 64,312,917 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020946765   ⟸   XM_021091106
- Peptide Label: isoform X1
- UniProtKB: A0A480QJ99 (UniProtKB/TrEMBL),   A0A8D1VPC0 (UniProtKB/TrEMBL),   A0A8D1HSS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_998923   ⟸   NM_213758
- UniProtKB: Q6TM04 (UniProtKB/TrEMBL),   A0A8D1VPC0 (UniProtKB/TrEMBL),   A0A8D1HSS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041406   ⟸   ENSSSCT00000040390
RefSeq Acc Id: ENSSSCP00000000753   ⟸   ENSSSCT00000000769
RefSeq Acc Id: ENSSSCP00000037327   ⟸   ENSSSCT00000044695


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000000707 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005040448 UniProtKB/TrEMBL
  ENSSSCG00025032323 UniProtKB/TrEMBL
  ENSSSCG00035081151 UniProtKB/TrEMBL
  ENSSSCG00040069176 UniProtKB/TrEMBL
  ENSSSCG00045019972 UniProtKB/TrEMBL
  ENSSSCG00055019763 UniProtKB/TrEMBL
  ENSSSCG00060046517 UniProtKB/TrEMBL
  ENSSSCG00065048345 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000000769.4 UniProtKB/TrEMBL
  ENSSSCT00000040390 ENTREZGENE
  ENSSSCT00000040390.2 UniProtKB/TrEMBL
  ENSSSCT00000044695 ENTREZGENE
  ENSSSCT00000044695.3 UniProtKB/TrEMBL
  ENSSSCT00005064684.1 UniProtKB/TrEMBL
  ENSSSCT00005064798.1 UniProtKB/TrEMBL
  ENSSSCT00025044157.1 UniProtKB/TrEMBL
  ENSSSCT00035111545.1 UniProtKB/TrEMBL
  ENSSSCT00035111549.1 UniProtKB/TrEMBL
  ENSSSCT00040094657.1 UniProtKB/TrEMBL
  ENSSSCT00040094854.1 UniProtKB/TrEMBL
  ENSSSCT00045034024.1 UniProtKB/TrEMBL
  ENSSSCT00045034168.1 UniProtKB/TrEMBL
  ENSSSCT00055038669.1 UniProtKB/TrEMBL
  ENSSSCT00055038869.1 UniProtKB/TrEMBL
  ENSSSCT00060063144.1 UniProtKB/TrEMBL
  ENSSSCT00060063149.1 UniProtKB/TrEMBL
  ENSSSCT00065066183.1 UniProtKB/TrEMBL
Gene3D-CATH Acid-sensing ion channels like domains UniProtKB/TrEMBL
  YojJ-like UniProtKB/TrEMBL
InterPro ENaC UniProtKB/TrEMBL
  ENaC_chordates UniProtKB/TrEMBL
  ENaC_CS UniProtKB/TrEMBL
KEGG Report ssc:396608 UniProtKB/TrEMBL
NCBI Gene SCNN1A ENTREZGENE
PANTHER AMILORIDE-SENSITIVE SODIUM CHANNEL SUBUNIT ALPHA UniProtKB/TrEMBL
  PTHR11690 UniProtKB/TrEMBL
Pfam ASC UniProtKB/TrEMBL
PRINTS AMINACHANNEL UniProtKB/TrEMBL
PROSITE ASC UniProtKB/TrEMBL
UniProt A0A287AC74_PIG UniProtKB/TrEMBL
  A0A480QJ99 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1HSS1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VPC0 ENTREZGENE, UniProtKB/TrEMBL
  F1SL28_PIG UniProtKB/TrEMBL
  Q6TM04 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92640 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-25 SCNN1A  sodium channel epithelial 1 subunit alpha  SCNN1A  sodium channel epithelial 1 alpha subunit  Symbol and/or name change 5135510 APPROVED