C1QA (complement C1q A chain) - Rat Genome Database

Name: C1QA
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: C1QA (complement C1q A chain) Sus scrofa

Analyze

Symbol:

C1QA

Name:

complement C1q A chain

RGD ID:

13980406

Description:

INVOLVED IN complement activation, classical pathway (ortholog); response to iron ion (ortholog); ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); basal cell carcinoma (ortholog); Brain Injuries (ortholog); FOUND IN complement component C1q complex (ortholog); extrinsic component of postsynaptic membrane (ortholog); extrinsic component of presynaptic membrane (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

complement C1q subcomponent subunit A; complement C1qA

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C1QA (complement C1q A chain)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	C1qa (complement component 1, q subcomponent, alpha polypeptide)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	C1qa (complement C1q A chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	C1qa (complement C1q A chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	C1QA (complement C1q A chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	C1QA (complement C1q A chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	C1qa (complement C1q A chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C1QA (complement C1q A chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	C1qa (complement C1q A chain)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	80,586,280 - 80,589,204 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	80,586,259 - 80,589,213 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	74,610,025 - 74,612,855 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ISO)

basal cell carcinoma (ISO)

Brain Injuries (ISO)

C1q Deficiency (ISO)

C1q Deficiency 1 (ISO)

congenital disorder of glycosylation Ir (ISO)

COVID-19 (ISO)

Drug Hypersensitivity Syndrome (ISO)

epilepsy (ISO)

exanthem (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

glomerulonephritis (ISO)

hyperprolinemia type 2 (ISO)

hypersensitivity reaction type III disease (ISO)

IgA glomerulonephritis (ISO)

iron deficiency anemia (ISO)

membranoproliferative glomerulonephritis (ISO)

Parkinson's disease 6 (ISO)

Stevens-Johnson syndrome (ISO)

systemic lupus erythematosus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

astrocyte activation (IEA)

complement activation, classical pathway (IEA,ISO)

complement-mediated synapse pruning (IEA)

innate immune response (IEA)

microglial cell activation (IEA)

neuron remodeling (IEA)

response to iron ion (ISO)

synapse organization (IEA)

synapse pruning (IEA)

vertebrate eye-specific patterning (IEA)

Cellular Component

collagen trimer (IEA)

complement component C1q complex (IEA,ISO)

extracellular region (IEA)

extrinsic component of postsynaptic membrane (ISO)

extrinsic component of presynaptic membrane (ISO)

glutamatergic synapse (ISO)

postsynapse (IEA)

synapse (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

C1QA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	80,586,280 - 80,589,204 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	80,586,259 - 80,589,213 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	74,610,025 - 74,612,855 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C1QA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	22,636,463 - 22,639,678 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	22,635,077 - 22,639,678 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	22,962,956 - 22,966,171 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	22,835,705 - 22,838,762 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	22,709,405 - 22,711,405	NCBI
Celera	1	21,287,826 - 21,290,883 (+)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	21,207,463 - 21,210,520 (+)	NCBI		HuRef
CHM1_1	1	23,075,637 - 23,078,694 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	22,461,488 - 22,464,703 (+)	NCBI		T2T-CHM13v2.0

C1qa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	136,623,227 - 136,626,155 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	136,623,228 - 136,626,114 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	136,895,916 - 136,898,844 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	136,895,917 - 136,898,803 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	136,451,831 - 136,454,759 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	136,167,994 - 136,170,836 (-)	NCBI		MGSCv36	mm8
Celera	4	135,103,233 - 135,106,157 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	69.05	NCBI

C1qa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	154,417,086 - 154,419,933 (-)	NCBI		GRCr8
mRatBN7.2	5	149,133,635 - 149,136,482 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	149,133,636 - 149,136,534 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	151,831,406 - 151,834,253 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	153,605,693 - 153,608,540 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	153,587,691 - 153,590,538 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	155,261,254 - 155,264,101 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	155,261,250 - 155,264,143 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	159,023,753 - 159,026,600 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	155,662,333 - 155,665,180 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	155,672,371 - 155,675,219 (-)	NCBI
Celera	5	147,531,382 - 147,534,229 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

C1qa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	2,752,970 - 2,756,488 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	2,753,362 - 2,756,220 (+)	NCBI	ChiLan1.0	ChiLan1.0

C1QA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	204,307,981 - 204,311,074 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	203,410,999 - 203,414,092 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	21,821,927 - 21,825,020 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	22,770,557 - 22,773,682 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

C1QA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	76,668,086 - 76,671,082 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	76,668,217 - 76,670,977 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	73,172,967 - 73,175,970 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	77,227,331 - 77,230,335 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	77,227,333 - 77,230,230 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	74,048,204 - 74,051,200 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	75,056,639 - 75,059,641 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	76,060,247 - 76,063,252 (-)	NCBI		UU_Cfam_GSD_1.0

C1qa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	42,183,130 - 42,185,545 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	8,008,534 - 8,010,191 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	8,007,953 - 8,010,591 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C1QA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	110,024,847 - 110,027,868 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	6,286,037 - 6,289,144 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C1qa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	7,363,567 - 7,366,617 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	7,363,615 - 7,366,408 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C1QA
100 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	9	2		5		5		1	3
Low	1	2	3		2	18	2	2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001003924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021093596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY349424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP245426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01022634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000062481 ⟹ ENSSSCP00000058150

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	80,586,280 - 80,589,204 (+)	Ensembl

RefSeq Acc Id:

NM_001003924 ⟹ NP_001003924

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	80,586,259 - 80,589,089 (+)	NCBI

Sequence:

show sequence

AGTGCACTGACGACGAGAGGCAGCGGCATCATGGAAGCCCCCCGGGGCTGGCTGGTGATCATGA
TCAGTGTGCTGGCCGTATCCCTGGCCTCTTCGGCGGCCCAGGACACGTGCCGAGATCTGGACGG
GAGGGACGGGGCCGCAAGAAAACCCGGCCGACCCGGGCGGCCAGGCCCCAAGGGAGAACGAGGA
GAGCCGGGAGCCCCTGCCTTTCAGACTGGCATCCGCGGCCTTAAAGGAGACCAGGGGGAGTCTG
GGTCCCCTGGAAAACCTGGCAGAATGGGCTACCCGGGGCCCAGCGGCCCTCCAGGGCTCCCGGG
CCTCCCAGGGTTGAAGGGCATCAAGGGCAACCCGGGAAACATCAAGGACCAGCGCCGGCCGGCC
TTCTCGGCCGTGCGACAGAATCCTCCGACGAGCGGCAACGTGGTCATCTTCGATGAGGTCATCA
CCAACCAGGAGGGCGCGTACAAGAGCCAGCTGGGCCAGTTCATCTGCGATGTGCCAGGCTACTA
CTACTTCACCTTCCAGGTGGTGTCCAAGTGGGACCTCTGCCTGTACATCATGTCCTCTAGGAGA
GACCAGGTCCAGCAGTCCTTGGGCTTCTGTGACTTCAACAGCAAGGGACTCTTCCAGGTGGTGT
CTGGGGGCACGGTGCTCCAGCTCCAGCGGGGAGACAAGGTCTGGATCCAAAGAGACCCCAATAA
GGGCCGCATTTACCAGGGTTCAGAAGCGGACAGCGTCTTCAGCGGCTTCCTCATCTTCCCCTCC
ACCTGAGCCAGAAAAAGACCCCCCCTACCCGCCTCCCCACCACGGCCTCTGCTTCCCGCTGTGT
GACCCTGGCCTACT

hide sequence

RefSeq Acc Id:

XM_021093596 ⟹ XP_020949255

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	80,586,280 - 80,589,213 (+)	NCBI

Sequence:

show sequence

AGGTGAGGCCCGTGCCTGAGAGGGAGGGGGCTGGGGAGTTCAGGGAAGCAGGGGAGCTGGCACA
GGAGGCTGGACCAGGGAAGGAGGGAGGGAGAGCGCTGCTCACTGGGTCTTTGCCAGGACAGGGT
TGCTCGGGGTGGGGGTGGGGGCGCTGATCCAGAACCCAGGACAAGCAAGTGGGGGGATCTTAAC
TCCAGGGGCTTGGGGGAGTCTGGGACGTGGTGCCAGACCCATCAGCTCTGGCCGGAGTTCCTGG
GTCCTGGTCTCCCAAAAGACAAGAAGCTGGGAAAAGGGGGTGCGTCCGAGTCCAGCAGAGGGGT
CCCACGGGGGGGACAGTATGTGACAGTCAGCCACCTCTCCTCCAGTGGGTGCTGAAAGGGGCCA
AGTGTGTAAAGGAGGGAGCAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGGTGTTT
GTGAATTCCGGGTGCATGCCCAGCTCTGCCATCTGGGTGAGAGGGTGTTAATTAAACAGGGAGC
AGGTGCTCAATAAATATTTGTCCAGTGGCATAGCTCATCTGTAGGAGTACATGGCTGTGTGTGT
CCAGCGGCATCATGGAAGCCCCCCGGGGCTGGCTGGTGATCATGATCAGTGTGCTGGCCGTATC
CCTGGCCTCTTCGGCGGCCCAGGACACGTGCCGAGATCTGGACGGGAGGGACGGGGCCGCAGGA
AAACCCGGCCGACCCGGGCGGCCAGGCCCCAAGGGAGAACGAGGAGAGCCGGGAGCCCCTGCCT
TTCAGACTGGCATCCGCGGCCTTAAAGGAGACCAGGGGGAGTCTGGGTCCCCTGGAAAACCTGG
CAGAATGGGCTACCCGGGGCCCAGCGGCCCTCCAGGGCTCCCGGGCCTCCCAGGGTTGAAGGGC
ATCAAGGGCAACCCGGGAAACATCAAGGACCAGCGCCGGCCGGCCTTCTCGGCCGTGCGACAGA
ATCCTCCGACGAGCGGCAACGTGGTCATCTTCGATGAGGTCATCACCAACCAGGAGGGCGCGTA
CAAGAGCCAGCTGGGCCAGTTCATCTGCGATGTGCCAGGCTACTACTACTTCACCTTCCAGGTG
GTGTCCAAGTGGGACCTCTGCCTGTACATCATGTCCTCTAGGAGAGACCAGGTCCAGCAGTCCT
TGGGCTTCTGTGACTTCAACAGCAAGGGACTCTTCCAGGTGGTGTCTGGGGGCACGGTGCTCCA
GCTCCAGCGGGGAGACAAGGTCTGGATCCAAAGAGACCCCAATAAGGGCCGCATTTACCAGGGT
TCAGAAGCGGACAGCGTCTTCAGCGGCTTCCTCATCTTCCCCTCCACCTGAGCCAGAAAAAGAC
CCCCCCTACCCGCCTCCCCACCACGGCCTCTGCTTCCCGCTGTGTGACCCTGGCCTACTCAGGC
CACCTCTGTGGTGGCTATGCTCCACTCTGTAAAGTGGGGGTGCTGTTGCTTTAGCTGCCTAAAG
GGAGATCATTTCTCAAATCTTTTTCTGGAATAAAATACCATGAGTCCATCACGTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001003924	(Get FASTA)	NCBI Sequence Viewer
	XP_020949255	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAR20892	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000058150
	ENSSSCP00000058150.2
	ENSSSCP00005028287.1
	ENSSSCP00015032356.1
	ENSSSCP00025015908.1
	ENSSSCP00030029849.1
	ENSSSCP00035047229.1
	ENSSSCP00040044759.1
	ENSSSCP00045024279.1
	ENSSSCP00050042793.1
	ENSSSCP00055046857.1
	ENSSSCP00060034507.1
	ENSSSCP00065000801.1
	ENSSSCP00070047915.1
	ENSSSCP00070047918.1
	ENSSSCP00070047920.1
GenBank Protein	Q69DL0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001003924 ⟸ NM_001003924
- Peptide Label:	precursor
- UniProtKB:	Q69DL0 (UniProtKB/Swiss-Prot), A0A8D0JQS8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAPRGWLVIMISVLAVSLASSAAQDTCRDLDGRDGAARKPGRPGRPGPKGERGEPGAPAFQTG IRGLKGDQGESGSPGKPGRMGYPGPSGPPGLPGLPGLKGIKGNPGNIKDQRRPAFSAVRQNPPT SGNVVIFDEVITNQEGAYKSQLGQFICDVPGYYYFTFQVVSKWDLCLYIMSSRRDQVQQSLGFC DFNSKGLFQVVSGGTVLQLQRGDKVWIQRDPNKGRIYQGSEADSVFSGFLIFPST hide sequence

RefSeq Acc Id:	XP_020949255 ⟸ XM_021093596
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1W1W0 (UniProtKB/TrEMBL), A0A287BNF7 (UniProtKB/TrEMBL), A0A8D0JQS8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAPRGWLVIMISVLAVSLASSAAQDTCRDLDGRDGAAGKPGRPGRPGPKGERGEPGAPAFQTG IRGLKGDQGESGSPGKPGRMGYPGPSGPPGLPGLPGLKGIKGNPGNIKDQRRPAFSAVRQNPPT SGNVVIFDEVITNQEGAYKSQLGQFICDVPGYYYFTFQVVSKWDLCLYIMSSRRDQVQQSLGFC DFNSKGLFQVVSGGTVLQLQRGDKVWIQRDPNKGRIYQGSEADSVFSGFLIFPST hide sequence

RefSeq Acc Id:

ENSSSCP00000058150 ⟸ ENSSSCT00000062481

Protein Domains

C1q Collagen-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000003524	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005028997	UniProtKB/TrEMBL
	ENSSSCG00015059869	UniProtKB/TrEMBL
	ENSSSCG00025027898	UniProtKB/TrEMBL
	ENSSSCG00030046841	UniProtKB/TrEMBL
	ENSSSCG00035079596	UniProtKB/TrEMBL
	ENSSSCG00040072459	UniProtKB/TrEMBL
	ENSSSCG00045020527	UniProtKB/TrEMBL
	ENSSSCG00050072493	UniProtKB/TrEMBL
	ENSSSCG00055029482	UniProtKB/TrEMBL
	ENSSSCG00060058429	UniProtKB/TrEMBL
	ENSSSCG00065001916	UniProtKB/TrEMBL
	ENSSSCG00070028107	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000062481	ENTREZGENE
	ENSSSCT00000062481.3	UniProtKB/TrEMBL
	ENSSSCT00005046036.1	UniProtKB/TrEMBL
	ENSSSCT00015080050.1	UniProtKB/TrEMBL
	ENSSSCT00025037830.1	UniProtKB/TrEMBL
	ENSSSCT00030065328.1	UniProtKB/TrEMBL
	ENSSSCT00035108919.1	UniProtKB/TrEMBL
	ENSSSCT00040099769.1	UniProtKB/TrEMBL
	ENSSSCT00045034994.1	UniProtKB/TrEMBL
	ENSSSCT00050098978.1	UniProtKB/TrEMBL
	ENSSSCT00055058549.1	UniProtKB/TrEMBL
	ENSSSCT00060079697.1	UniProtKB/TrEMBL
	ENSSSCT00065002392.1	UniProtKB/TrEMBL
	ENSSSCT00070056389.1	UniProtKB/TrEMBL
	ENSSSCT00070056392.1	UniProtKB/TrEMBL
	ENSSSCT00070056394.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	C1q_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Collagen	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tumour_necrosis_fac-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:445461	UniProtKB/Swiss-Prot
NCBI Gene	C1QA	ENTREZGENE
PANTHER	EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15427:SF26	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	C1q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Collagen	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	COMPLEMNTC1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	C1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49842	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A287BNF7	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1W0J2_PIG	UniProtKB/TrEMBL
	A0A4X1W1V4_PIG	UniProtKB/TrEMBL
	A0A4X1W1W0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0JQS8	ENTREZGENE, UniProtKB/TrEMBL
	C1QA_PIG	UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID	VGNC:96926	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM