INO80E (INO80 complex subunit E) - Rat Genome Database

Name: INO80E
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: INO80E (INO80 complex subunit E) Sus scrofa

Analyze

Symbol:

INO80E

Name:

INO80 complex subunit E

RGD ID:

13924504

Description:

INVOLVED IN positive regulation of DNA repair (ortholog); positive regulation of telomere maintenance in response to DNA damage (ortholog); regulation of DNA repair (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN Ino80 complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	INO80E (INO80 complex subunit E)	HGNC	Ensembl, NCBI, OrthoDB
Mus musculus (house mouse):	Ino80e (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ino80e (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ino80e (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	INO80E (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	INO80E (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ino80e (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	INO80E (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ino80e (INO80 complex subunit E)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	18,202,134 - 18,212,186 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	18,202,092 - 18,212,187 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

chromosome 16p11.2 deletion syndrome, 593-kb (ISO)

chromosome 16p11.2 duplication syndrome (ISO)

coronin-1A deficiency (ISO)

Episodic Kinesigenic Dyskinesia (ISO)

episodic kinesigenic dyskinesia 1 (ISO)

Glycogen Storage Disease XII (ISO)

Neurodevelopmental Disorders (ISO)

schizophrenia (ISO)

spondylocostal dysostosis 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin remodeling (IEA)

positive regulation of DNA repair (ISO)

positive regulation of DNA-templated transcription (IEA)

positive regulation of telomere maintenance in response to DNA damage (ISO)

regulation of cell cycle (IEA)

regulation of chromosome organization (IEA)

regulation of DNA repair (ISO)

regulation of DNA replication (IEA)

regulation of DNA strand elongation (IEA)

regulation of embryonic development (ISO)

telomere maintenance (ISO)

Cellular Component

Ino80 complex (IBA,IEA,ISO)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

INO80 family mediated chromatin remodeling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

INO80E
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	18,202,134 - 18,212,186 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	18,202,092 - 18,212,187 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

INO80E
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	29,996,241 - 30,005,791 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	29,995,715 - 30,005,793 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	30,007,562 - 30,017,112 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	29,915,032 - 29,924,613 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	72,778,609 - 72,788,190 (-)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	27,668,546 - 27,678,127 (+)	NCBI		HuRef
CHM1_1	16	31,223,320 - 31,232,901 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	30,278,881 - 30,288,431 (+)	NCBI		T2T-CHM13v2.0

Ino80e
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	126,450,756 - 126,461,544 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	126,450,132 - 126,461,549 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	126,851,584 - 126,862,372 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	126,850,960 - 126,862,377 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	133,995,947 - 134,004,977 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	126,643,581 - 126,652,611 (-)	NCBI		MGSCv36	mm8
Celera	7	126,700,571 - 126,709,601 (-)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	69.25	NCBI

Ino80e
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	190,891,315 - 190,902,902 (-)	NCBI		GRCr8
mRatBN7.2	1	181,461,406 - 181,472,059 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	181,461,408 - 181,472,469 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	189,812,774 - 189,823,360 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	196,998,847 - 197,009,435 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	189,666,058 - 189,676,655 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	198,287,489 - 198,298,076 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	198,287,490 - 198,298,076 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	205,267,669 - 205,278,497 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	186,030,837 - 186,041,424 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	186,180,718 - 186,191,305 (-)	NCBI
Celera	1	179,116,645 - 179,127,316 (-)	NCBI		Celera
Cytogenetic Map	1	q36	NCBI

Ino80e
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	6,949,534 - 6,964,366 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955493	6,953,945 - 6,963,910 (-)	NCBI	ChiLan1.0	ChiLan1.0

INO80E
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	30,745,905 - 30,755,587 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	35,470,329 - 35,479,865 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	30,369,610 - 30,379,198 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	30,369,610 - 30,379,198 (+)	Ensembl	panpan1.1		panPan2

INO80E
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	18,033,366 - 18,041,604 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	18,033,363 - 18,041,308 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	19,609,396 - 19,618,577 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	18,166,568 - 18,175,749 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	18,167,507 - 18,175,619 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	17,965,777 - 17,974,964 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,881,158 - 17,890,333 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	18,196,753 - 18,205,934 (+)	NCBI		UU_Cfam_GSD_1.0

Ino80e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	124,365,732 - 124,374,485 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	12,463,520 - 12,472,257 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	12,463,592 - 12,472,271 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

INO80E
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	26,656,480 - 26,665,766 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	26,653,722 - 26,665,652 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	2,867,677 - 2,876,952 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ino80e
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	13,221,557 - 13,230,415 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	13,221,557 - 13,230,495 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in INO80E
100 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	9	4	3	5	2	23	2	3	3
Below cutoff	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021088006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK396186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01116921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000058471 ⟹ ENSSSCP00000035862

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	18,202,134 - 18,212,186 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000065184 ⟹ ENSSSCP00000053233

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	18,202,166 - 18,212,186 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000106823 ⟹ ENSSSCP00000075246

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	3	18,202,143 - 18,212,183 (+)	Ensembl

RefSeq Acc Id:

XM_021088006 ⟹ XP_020943665

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	18,202,092 - 18,212,187 (+)	NCBI

Sequence:

show sequence

ACTCTGGGAGTTGTAGTCCCAGCGAACACAGCCTAGCCGAGTCTCCGGAAGTGGAAGCGGAAGA
GGCCGGGCCGAGGCGGCTTTCGGGTAGCGGGACCCCGGACTAGGTTTGGGGCGCCACTCCCGGA
CCCAGTCATGAACGGGCCGGCGGATGGCGAAGTGGACTACAAGAAGAAATACCGGAACCTGAAG
CGGAAGCTCAAATTCCTCATCTACGAACACGAGTGCTTCCAGGAGGAACTGAGGAAGGCACAGA
GAAAATTGTTGAAGGTGTCCCGGGACAAGAGTTTCCTCCTAGACCGACTTCTGCAGTACGAGAA
CGTGGATGAAGACTCTTCTGACTCAGATGCCACCGCATCTTCGGATAACAGCGAGACCGAGGGG
ACACCCAAGTTGTCGGACACACCAGCTCCTAAGAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCC
CCTCCCCCTCCAGCCTCTCCCTGCCTCCTTCAGCAGGGTTTCCCCTTCAGGCCTCCGGTGCCCC
CTCCCCATACCTGAGCTCGCTGGCTTCCCCCCCCTACCCCCCATTCCCTTCCGATTACCTGGCC
CTGCAGCTGCCCGAGCCCAGCCCCCTGCGGCCCAAGCGGGAGAAACGGCCCCGCCTGCCCCGGA
AACTCAAGATGGCGGTGGGACCCCCCGACTGCCCGGTGGGAGGGCCGCTGACCTTCCCAGGCCG
GGGTTCTGGGGCCGGGGTGGGGGCAGCCCTGGCCCCACTGCCCCCACCCAAGATGCCCCCTCCT
ACCATCCTGAGCGCCGTCCCTCGGCAGATGTTCAGCGATGCGGGCAGTGGGGATGACGCCCTGG
ACGGGGATGATGACCTGGTGATCGACATCCCGGAATGAACCCCCTCTGCCCGACCCCCTGCCCG
GCGCCCTCTGGGCCAGCACACACGAGCCCCCAGCTTCCGCAGAGACATTTATTGACACCCAGTT
GCCATGCTGCGGCCACTGACACAATCAGAAAAGGCGTAAACATGCACGAGTGTCCCCCGGAAGG
TGGGCCCCCTCCAGGGAGGGCAGGTGTCCTGCCCTCGCGTCCCAGCCCGACACTGGGGACAGTT
ATTGAAATGAGTGGCCAGGGGCATCTGCCACCTCTCAGAGAGGCAGAGACCCGGCGGTGGCCCC
CCCGCTTAAATGGGCAGCTGTACAGGGCTAGGTGTTTGTGGTGGTTTTTGTGTTTTTGTGTTTT
TGAAATGAAGATTCTGTATTAAAGGAGTGGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
GCTTTTTGGCTTTTTGCTCCTTCTCTTTTTGGGGGGGAAATCCTCTCCTCCGAACCCCCCCTAA
TCCGACCTCCTCCCTATAGGGCAGGGGGCCGGGCAGCCTGGAGAGGCAGGAGGGAGGAGCAGCA
GCCAGGCCTTGAGCCAGGGGCACCGCAGGGACCCCCGCTGCAGGTGTGCTCAGGGTGGGCGGTT
TGCATATTTGCGTGTCCTCATCGCAGCGAGTCAGGCAGGGTGACGTTTGCATATGTGCCTAGAG
CTCCCCACAGTCCCTCACAAGAAGACAGACCCACGGTCACGGAGACGCTCACGAAATAAGACAA
GTAGGGTGGGGTGGGGCAGCCACCCCGTGTAAACGTGCAACACATTCGTGCGAGGGTTGGGTAC
CGGCCCTGGCCCTCAAGGGCCGTGTGCCAGGCAGCCAGCCTGCTCAGGCTGAGGGCAGGGCGCC
GGCCGCCGGGGGCAGCTCGCTGGTCAGGGTGTGCCAGCGCTCCAGGGCTGCGTCCGGCTGCCGC
AGACAGTCGCTCCAGTGCTTCCGGGCCTCTCCCCGGGCGCCTGGCCCCAGGGACACGCCACCTG
GGGAGCAGTAGAGGTGGCAGGATCAGGGCCCCAGCTCACTGCCAGTCTGCCCTCCATCAGCCCC
ACCCGGCAGGCTCCTCCCTCACCGATGAAGTCGTTGGATTTGCCAATGTCATAGTCCCAGACTG
TGACTTCCAGAGTCTTCGTGGCCAGAGCGGAGAGCTCCATCTCGTAGAAGAACTCCTGGGACAG
GGCAAGCCACACCTTCCGTGAGGCGCGGTCCCCACCCCCAGGCCGCCTCAGTGTCTGGTCTTGG
CCCCACTTACCTCATTAAATTCCGGGTTGAGCGTCTTCTTCTTCAC

hide sequence

RefSeq Acc Id:

XM_021088007 ⟹ XP_020943666

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	18,202,092 - 18,212,187 (+)	NCBI

Sequence:

show sequence

ACTCTGGGAGTTGTAGTCCCAGCGAACACAGCCTAGCCGAGTCTCCGGAAGTGGAAGCGGAAGA
GGCCGGGCCGAGGCGGCTTTCGGGTAGCGGGACCCCGGACTAGGTTTGGGGCGCCACTCCCGGA
CCCAGTCATGAACGGGCCGGCGGATGGCGAAGTGGACTACAAGAAGAAATACCGGAACCTGAAG
CGGAAGCTCAAATTCCTCATCTACGAACACGAGTGCTTCCAGGAGGAACTGAGGAAGGCACAGA
GAAAATTGTTGAAGGTGTCCCGGGACAAGAGTTTCCTCCTAGACCGACTTCTGCAGTACGAGAA
CGTGGATGAAGACTCTTCTGACTCAGATGCCACCGCATCTTCGGATAACAGCGAGACCGAGGGG
ACACCCAAGTTGTCGGACACACCAGCTCCTAAGAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCC
CCTCCCCCTCCAGCCTCTCCCTGCCTCCTTCAGCAGGGTTTCCCCTTCAGGCCTCCGGTGCCCC
CTCCCCATACCTGAGCTCGATGGCGGTGGGACCCCCCGACTGCCCGGTGGGAGGGCCGCTGACC
TTCCCAGGCCGGGGTTCTGGGGCCGGGGTGGGGGCAGCCCTGGCCCCACTGCCCCCACCCAAGA
TGCCCCCTCCTACCATCCTGAGCGCCGTCCCTCGGCAGATGTTCAGCGATGCGGGCAGTGGGGA
TGACGCCCTGGACGGGGATGATGACCTGGTGATCGACATCCCGGAATGAACCCCCTCTGCCCGA
CCCCCTGCCCGGCGCCCTCTGGGCCAGCACACACGAGCCCCCAGCTTCCGCAGAGACATTTATT
GACACCCAGTTGCCATGCTGCGGCCACTGACACAATCAGAAAAGGCGTAAACATGCACGAGTGT
CCCCCGGAAGGTGGGCCCCCTCCAGGGAGGGCAGGTGTCCTGCCCTCGCGTCCCAGCCCGACAC
TGGGGACAGTTATTGAAATGAGTGGCCAGGGGCATCTGCCACCTCTCAGAGAGGCAGAGACCCG
GCGGTGGCCCCCCCGCTTAAATGGGCAGCTGTACAGGGCTAGGTGTTTGTGGTGGTTTTTGTGT
TTTTGTGTTTTTGAAATGAAGATTCTGTATTAAAGGAGTGGCTCTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTGGCTTTTTGGCTTTTTGCTCCTTCTCTTTTTGGGGGGGAAATCCTCTCCTCCGA
ACCCCCCCTAATCCGACCTCCTCCCTATAGGGCAGGGGGCCGGGCAGCCTGGAGAGGCAGGAGG
GAGGAGCAGCAGCCAGGCCTTGAGCCAGGGGCACCGCAGGGACCCCCGCTGCAGGTGTGCTCAG
GGTGGGCGGTTTGCATATTTGCGTGTCCTCATCGCAGCGAGTCAGGCAGGGTGACGTTTGCATA
TGTGCCTAGAGCTCCCCACAGTCCCTCACAAGAAGACAGACCCACGGTCACGGAGACGCTCACG
AAATAAGACAAGTAGGGTGGGGTGGGGCAGCCACCCCGTGTAAACGTGCAACACATTCGTGCGA
GGGTTGGGTACCGGCCCTGGCCCTCAAGGGCCGTGTGCCAGGCAGCCAGCCTGCTCAGGCTGAG
GGCAGGGCGCCGGCCGCCGGGGGCAGCTCGCTGGTCAGGGTGTGCCAGCGCTCCAGGGCTGCGT
CCGGCTGCCGCAGACAGTCGCTCCAGTGCTTCCGGGCCTCTCCCCGGGCGCCTGGCCCCAGGGA
CACGCCACCTGGGGAGCAGTAGAGGTGGCAGGATCAGGGCCCCAGCTCACTGCCAGTCTGCCCT
CCATCAGCCCCACCCGGCAGGCTCCTCCCTCACCGATGAAGTCGTTGGATTTGCCAATGTCATA
GTCCCAGACTGTGACTTCCAGAGTCTTCGTGGCCAGAGCGGAGAGCTCCATCTCGTAGAAGAAC
TCCTGGGACAGGGCAAGCCACACCTTCCGTGAGGCGCGGTCCCCACCCCCAGGCCGCCTCAGTG
TCTGGTCTTGGCCCCACTTACCTCATTAAATTCCGGGTTGAGCGTCTTCTTCTTCAC

hide sequence

RefSeq Acc Id:

XM_021088008 ⟹ XP_020943667

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	18,202,092 - 18,210,671 (+)	NCBI

Sequence:

show sequence

ACTCTGGGAGTTGTAGTCCCAGCGAACACAGCCTAGCCGAGTCTCCGGAAGTGGAAGCGGAAGA
GGCCGGGCCGAGGCGGCTTTCGGGTAGCGGGACCCCGGACTAGGTTTGGGGCGCCACTCCCGGA
CCCAGTCATGAACGGGCCGGCGGATGGCGAAGTGGACTACAAGAAGAAATACCGGAACCTGAAG
CGGAAGCTCAAATTCCTCATCTACGAACACGAGTGCTTCCAGGAGGAACTGAGGAAGGCACAGA
GAAAATTGTTGAAGGTGTCCCGGGACAAGAGTTTCCTCCTAGACCGACTTCTGCAGTACGAGAA
CGTGGATGAAGACTCTTCTGACTCAGATGCCACCGCATCTTCGGATAACAGCGAGACCGAGGGG
ACACCCAAGTTGTCGGACACACCAGCTCCTAAGAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCC
CCTCCCCCTCCAGCCTCTCCCTGCCTCCTTCAGCAGGGTTTCCCCTTCAGGCCTCCGGTGCCCC
CTCCCCATACCTGAGCTCGCTGGCTTCCCCCCCCTACCCCCCATTCCCTTCCGATTACCTGGCC
CTGCAGCTGCCCGAGCCCAGCCCCCTGCGGCCCAAGCGGGAGAAACGGCCCCGCCTGCCCCGGA
AACTCAAGAGAGCTCACTCTGGCTGCAGTGTGGAGGAGGAGCTGGATCTGGGAGAGGCTGAAGG
CAGGGAGTCCAGTTAGGAGGCTGGTACCGTAGCCCAGGTGAGCTGAGAGAAGGGCCTGGCCGAA
GCCCGTGGCTGCGGGGATCCCACAGAGGGGCCTGTCCCAGATTTGAGCGGTAGAGGCCTCACAC
AGCGGGGGGTGGAGACTGTTGACACCCTCCACCGAACCTGTGAGTCCCTCGGCAGGAGGAGGGA
GAGGAGGGCAGTGGTGGCAAGTGGTACCTTAGGTCCCCAGAGGTGGGCGGGCAGGCGCCGCAGG
CTGGCTCTGGCTCTAAGTGCAGTTACAGGGGCAGCCAGGGTGCCTGACGTGCGAGGGCAGGGCC
TGGCCTTTCCCTCCTGGCTTCCTGTAAGACCCCCTCCACCACCCGCCTCATCACCGCCTCCATC
ACCACCCCTCACTCCCAGACACCGGCTGCTTTGAGACTCCCAAGGGGCCGAGGTGGGGCAGGCT
CCCCGATTCCAGCTCTGGCTGGCCTGGCTGTGTCCACTGCCCCAAGAATGAGTCCTTGCCCCCA
TCCCCGTCCCCTAGGACTGTCTTAAGGGGCAGTGCCAGCCTCCTGGAGGGCCCAGTGCCTCCCT
GATAAGCCCTCCCTGTGTTTCTTCCCCCTG

hide sequence

RefSeq Acc Id:

XM_021088009 ⟹ XP_020943668

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	3	18,202,092 - 18,210,735 (+)	NCBI

Sequence:

show sequence

ACTCTGGGAGTTGTAGTCCCAGCGAACACAGCCTAGCCGAGTCTCCGGAAGTGGAAGCGGAAGA
GGCCGGGCCGAGGCGGCTTTCGGGTAGCGGGACCCCGGACTAGGTTTGGGGCGCCACTCCCGGA
CCCAGTCATGAACGGGCCGGCGGATGGCGAAGTGGACTACAAGAAGAAATACCGGAACCTGAAG
CGGAAGCTCAAATTCCTCATCTACGAACACGAGTGCTTCCAGGAGGAACTGAGGAAGGCACAGA
GAAAATTGTTGAAGGTGTCCCGGGACAAGAGTTTCCTCCTAGACCGACTTCTGCAGTACGAGAA
CGTGGATGAAGACTCTTCTGACTCAGATGCCACCGCATCTTCGGATAACAGCGAGACCGAGGGG
ACACCCAAGTTGTCGGACACACCAGCTCCTAAGAGGAAGAGAAGCCCTCCGCTGGGGGGCGCCC
CCTCCCCCTCCAGCCTCTCCCTGCCTCCTTCAGCAGGGTTTCCCCTTCAGGCCTCCGGTGCCCC
CTCCCCATACCTGAGCTCGCTGGCTTCCCCCCCCTACCCCCCATTCCCTTCCGATTACCTGGCC
CTGCAGCTGCCCGAGCCCAGCCCCCTGCGGCCCAAGCGGGAGAAACGGCCCCGCCTGCCCCGGA
AACTCAAGAGAGCTCACTCTGGCTGCAGTGTGGAGGAGGAGCTGGATCTGGGAGAGGCTGAAGG
CAGGGAGTCCAGTTAGGAGGCTGGTACCGTAGCCCAGATGGCGGTGGGACCCCCCGACTGCCCG
GTGGGAGGGCCGCTGACCTTCCCAGGCCGGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_020943665	(Get FASTA)	NCBI Sequence Viewer
	XP_020943666	(Get FASTA)	NCBI Sequence Viewer
	XP_020943667	(Get FASTA)	NCBI Sequence Viewer
	XP_020943668	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000035862
	ENSSSCP00000035862.2
	ENSSSCP00000053233
	ENSSSCP00000053233.2
	ENSSSCP00000075246.1
	ENSSSCP00005030495.1
	ENSSSCP00005030626.1
	ENSSSCP00005030644.1
	ENSSSCP00015028636.1
	ENSSSCP00015028774.1
	ENSSSCP00015028834.1
	ENSSSCP00025037136.1
	ENSSSCP00025037184.1
	ENSSSCP00025037261.1
	ENSSSCP00030046997.1
	ENSSSCP00030047022.1
	ENSSSCP00030047029.1
	ENSSSCP00035031751.1
	ENSSSCP00035031756.1
	ENSSSCP00035031766.1
	ENSSSCP00035031768.1
	ENSSSCP00035031773.1
	ENSSSCP00040025459.1
	ENSSSCP00040025529.1
	ENSSSCP00040025568.1
	ENSSSCP00045021199.1
	ENSSSCP00045021256.1
	ENSSSCP00045021302.1
	ENSSSCP00045021382.1
	ENSSSCP00050042673.1
	ENSSSCP00050042676.1
	ENSSSCP00050042682.1
	ENSSSCP00055048073.1
	ENSSSCP00055048094.1
	ENSSSCP00055048115.1
	ENSSSCP00055048127.1
	ENSSSCP00060041969.1
	ENSSSCP00060041978.1
	ENSSSCP00060041988.1
	ENSSSCP00060041999.1
	ENSSSCP00060042004.1
	ENSSSCP00060042009.1
	ENSSSCP00065015437.1
	ENSSSCP00065015442.1
	ENSSSCP00065015444.1
	ENSSSCP00065015446.1
	ENSSSCP00070022741.1
	ENSSSCP00070022749.1

RefSeq Acc Id:	XP_020943665 ⟸ XM_021088006
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1WMP3 (UniProtKB/TrEMBL), A0A480SKB7 (UniProtKB/TrEMBL), A0A4X1U1U4 (UniProtKB/TrEMBL), A0A8D1ERM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVD EDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSAGFPLQASGAPSP YLSSLASPPYPPFPSDYLALQLPEPSPLRPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGS GAGVGAALAPLPPPKMPPPTILSAVPRQMFSDAGSGDDALDGDDDLVIDIPE hide sequence

RefSeq Acc Id:	XP_020943666 ⟸ XM_021088007
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1SB54 (UniProtKB/TrEMBL), A0A286ZW09 (UniProtKB/TrEMBL), A0A4X1TZ54 (UniProtKB/TrEMBL), A0A8D0UXM6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVD EDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSAGFPLQASGAPSP YLSSMAVGPPDCPVGGPLTFPGRGSGAGVGAALAPLPPPKMPPPTILSAVPRQMFSDAGSGDDA LDGDDDLVIDIPE hide sequence

RefSeq Acc Id:	XP_020943668 ⟸ XM_021088009
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1AHT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVD EDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSAGFPLQASGAPSP YLSSLASPPYPPFPSDYLALQLPEPSPLRPKREKRPRLPRKLKRAHSGCSVEEELDLGEAEGRE SS hide sequence

RefSeq Acc Id:	XP_020943667 ⟸ XM_021088008
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1AHT6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVD EDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSAGFPLQASGAPSP YLSSLASPPYPPFPSDYLALQLPEPSPLRPKREKRPRLPRKLKRAHSGCSVEEELDLGEAEGRE SS hide sequence

RefSeq Acc Id:

ENSSSCP00000035862 ⟸ ENSSSCT00000058471

RefSeq Acc Id:

ENSSSCP00000053233 ⟸ ENSSSCT00000065184

RefSeq Acc Id:

ENSSSCP00000075246 ⟸ ENSSSCT00000106823

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000032921	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005030978	UniProtKB/TrEMBL
	ENSSSCG00015053526	UniProtKB/TrEMBL
	ENSSSCG00025062419	UniProtKB/TrEMBL
	ENSSSCG00030072695	UniProtKB/TrEMBL
	ENSSSCG00035057967	UniProtKB/TrEMBL
	ENSSSCG00040045159	UniProtKB/TrEMBL
	ENSSSCG00045017974	UniProtKB/TrEMBL
	ENSSSCG00050072339	UniProtKB/TrEMBL
	ENSSSCG00055030157	UniProtKB/TrEMBL
	ENSSSCG00060070790	UniProtKB/TrEMBL
	ENSSSCG00065027285	UniProtKB/TrEMBL
	ENSSSCG00070013934	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000058471	ENTREZGENE
	ENSSSCT00000058471.3	UniProtKB/TrEMBL
	ENSSSCT00000065184	ENTREZGENE
	ENSSSCT00000065184.3	UniProtKB/TrEMBL
	ENSSSCT00000106823.1	UniProtKB/TrEMBL
	ENSSSCT00005049394.1	UniProtKB/TrEMBL
	ENSSSCT00005049589.1	UniProtKB/TrEMBL
	ENSSSCT00005049617.1	UniProtKB/TrEMBL
	ENSSSCT00015071442.1	UniProtKB/TrEMBL
	ENSSSCT00015071773.1	UniProtKB/TrEMBL
	ENSSSCT00015071886.1	UniProtKB/TrEMBL
	ENSSSCT00025085435.1	UniProtKB/TrEMBL
	ENSSSCT00025085543.1	UniProtKB/TrEMBL
	ENSSSCT00025085711.1	UniProtKB/TrEMBL
	ENSSSCT00030101879.1	UniProtKB/TrEMBL
	ENSSSCT00030101925.1	UniProtKB/TrEMBL
	ENSSSCT00030101937.1	UniProtKB/TrEMBL
	ENSSSCT00035077575.1	UniProtKB/TrEMBL
	ENSSSCT00035077587.1	UniProtKB/TrEMBL
	ENSSSCT00035077602.1	UniProtKB/TrEMBL
	ENSSSCT00035077609.1	UniProtKB/TrEMBL
	ENSSSCT00035077614.1	UniProtKB/TrEMBL
	ENSSSCT00040060625.1	UniProtKB/TrEMBL
	ENSSSCT00040060776.1	UniProtKB/TrEMBL
	ENSSSCT00040060862.1	UniProtKB/TrEMBL
	ENSSSCT00045030593.1	UniProtKB/TrEMBL
	ENSSSCT00045030664.1	UniProtKB/TrEMBL
	ENSSSCT00045030722.1	UniProtKB/TrEMBL
	ENSSSCT00045030835.1	UniProtKB/TrEMBL
	ENSSSCT00050098747.1	UniProtKB/TrEMBL
	ENSSSCT00050098752.1	UniProtKB/TrEMBL
	ENSSSCT00050098761.1	UniProtKB/TrEMBL
	ENSSSCT00055059996.1	UniProtKB/TrEMBL
	ENSSSCT00055060019.1	UniProtKB/TrEMBL
	ENSSSCT00055060044.1	UniProtKB/TrEMBL
	ENSSSCT00055060059.1	UniProtKB/TrEMBL
	ENSSSCT00060096797.1	UniProtKB/TrEMBL
	ENSSSCT00060096812.1	UniProtKB/TrEMBL
	ENSSSCT00060096841.1	UniProtKB/TrEMBL
	ENSSSCT00060096869.1	UniProtKB/TrEMBL
	ENSSSCT00060096885.1	UniProtKB/TrEMBL
	ENSSSCT00060096893.1	UniProtKB/TrEMBL
	ENSSSCT00065036747.1	UniProtKB/TrEMBL
	ENSSSCT00065036761.1	UniProtKB/TrEMBL
	ENSSSCT00065036763.1	UniProtKB/TrEMBL
	ENSSSCT00065036765.1	UniProtKB/TrEMBL
	ENSSSCT00070027349.1	UniProtKB/TrEMBL
	ENSSSCT00070027356.1	UniProtKB/TrEMBL
InterPro	INO80E	UniProtKB/TrEMBL
NCBI Gene	INO80E	ENTREZGENE
PANTHER	INO80 COMPLEX SUBUNIT E	UniProtKB/TrEMBL
	PTHR21812	UniProtKB/TrEMBL
UniProt	A0A286ZW09	ENTREZGENE, UniProtKB/TrEMBL
	A0A480SKB7	ENTREZGENE
	A0A480TR54_PIG	UniProtKB/TrEMBL
	A0A4X1TZ54	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U1U4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0SVW4_PIG	UniProtKB/TrEMBL
	A0A8D0UXM6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1AHT6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1ERM4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1HND7_PIG	UniProtKB/TrEMBL
	A0A8D1HSC9_PIG	UniProtKB/TrEMBL
	A0A8D1SB54	ENTREZGENE
	A0A8D1WMP3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1WNA9_PIG	UniProtKB/TrEMBL
	A0A8D1Y3D1_PIG	UniProtKB/TrEMBL
UniProt Secondary	A0A287B9M6	UniProtKB/TrEMBL
	A0A480SKB7	UniProtKB/TrEMBL
	A0A8D1SB54	UniProtKB/TrEMBL
VGNC ID	VGNC:89139	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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