MACROD1 (mono-ADP ribosylhydrolase 1) - Rat Genome Database

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Gene: MACROD1 (mono-ADP ribosylhydrolase 1) Sus scrofa
Analyze
Symbol: MACROD1
Name: mono-ADP ribosylhydrolase 1
RGD ID: 13893300
Description: ENCODES a protein that exhibits ADP-ribosylglutamate hydrolase activity (inferred); deacetylase activity (inferred); hydrolase activity, acting on glycosyl bonds (inferred); INVOLVED IN DNA damage response (inferred); purine nucleoside metabolic process (inferred); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH hereditary spastic paraplegia (ortholog); high grade glioma (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ADP-ribose glycohydrolase MACROD1; MACRO domain containing 1; O-acetyl-ADP-ribose deacetylase MACROD1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,939,125 - 8,088,595 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,939,125 - 8,087,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,054,730 - 7,204,542 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MACROD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,939,125 - 8,088,595 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,939,125 - 8,087,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.227,054,730 - 7,204,542 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MACROD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381163,998,558 - 64,166,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1163,998,558 - 64,166,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371163,766,030 - 63,933,585 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,522,606 - 63,690,094 (-)NCBINCBI36Build 36hg18NCBI36
Celera1161,092,805 - 61,259,693 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,094,651 - 60,262,257 (-)NCBIHuRef
CHM1_11163,649,362 - 63,816,761 (-)NCBICHM1_1
T2T-CHM13v2.01163,988,261 - 64,156,074 (-)NCBIT2T-CHM13v2.0
Macrod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,034,065 - 7,175,427 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl197,034,178 - 7,175,422 (+)EnsemblGRCm39 Ensembl
GRCm38197,056,728 - 7,198,062 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,056,810 - 7,198,057 (+)EnsemblGRCm38mm10GRCm38
MGSCv37197,131,258 - 7,272,552 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,123,854 - 7,265,101 (+)NCBIMGSCv36mm8
Celera196,833,702 - 6,974,873 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.17NCBI
Macrod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,675,413 - 213,831,571 (+)NCBIGRCr8
mRatBN7.21204,246,238 - 204,387,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,246,166 - 204,389,716 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,596,116 - 212,736,945 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,691,528 - 219,832,257 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,382,579 - 212,523,308 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,310,916 - 222,451,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,310,920 - 222,451,484 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,301,706 - 229,442,053 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,730,907 - 209,871,392 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,889,336 - 210,029,821 (+)NCBI
Celera1201,779,880 - 201,919,740 (+)NCBICelera
Cytogenetic Map1q43NCBI
Macrod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,906,521 - 21,046,345 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,906,406 - 21,046,448 (+)NCBIChiLan1.0ChiLan1.0
MACROD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,225,170 - 65,395,360 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,270,344 - 66,440,420 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,355,525 - 59,525,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11162,702,882 - 62,872,214 (-)NCBIpanpan1.1PanPan1.1panPan2
MACROD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,883,335 - 53,033,490 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,883,362 - 53,162,034 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,489,863 - 51,639,723 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,928,478 - 54,078,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,928,502 - 54,078,349 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11853,031,114 - 53,180,737 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,606,591 - 52,756,405 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,390,848 - 53,540,728 (+)NCBIUU_Cfam_GSD_1.0
Macrod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,576,259 - 8,712,495 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365995,018,770 - 5,154,491 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365995,018,636 - 5,154,844 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MACROD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1110,072,238 - 10,247,121 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl110,072,263 - 10,250,203 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,414,491 - 107,583,049 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Macrod1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476722,135,881 - 22,278,329 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476722,135,972 - 22,278,429 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MACROD1
4693 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 2 1
Low 6 3 22 2 1
Below cutoff 3 2 4 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000014256   ⟹   ENSSSCP00000013870
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,939,125 - 8,088,595 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039696   ⟹   ENSSSCP00000054539
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,939,125 - 8,088,595 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000066120   ⟹   ENSSSCP00000034230
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,939,044 - 8,087,429 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000084410   ⟹   ENSSSCP00000070441
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,939,125 - 8,087,429 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088002   ⟹   ENSSSCP00000068798
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl28,081,691 - 8,087,694 (+)Ensembl
RefSeq Acc Id: NM_001204770   ⟹   NP_001191699
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.127,939,125 - 8,087,656 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001191699   ⟸   NM_001204770
- UniProtKB: E7EBY5 (UniProtKB/TrEMBL),   A0A8D0VMJ0 (UniProtKB/TrEMBL),   A0A4X1VCP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000068798   ⟸   ENSSSCT00000088002
RefSeq Acc Id: ENSSSCP00000054539   ⟸   ENSSSCT00000039696
RefSeq Acc Id: ENSSSCP00000070441   ⟸   ENSSSCT00000084410
RefSeq Acc Id: ENSSSCP00000034230   ⟸   ENSSSCT00000066120
RefSeq Acc Id: ENSSSCP00000013870   ⟸   ENSSSCT00000014256
Protein Domains
Macro


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013043 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025076197 UniProtKB/TrEMBL
  ENSSSCG00030012837 UniProtKB/TrEMBL
  ENSSSCG00035033519 UniProtKB/TrEMBL
  ENSSSCG00040050299 UniProtKB/TrEMBL
  ENSSSCG00045029853 UniProtKB/TrEMBL
  ENSSSCG00050039205 UniProtKB/TrEMBL
  ENSSSCG00055002602 UniProtKB/TrEMBL
  ENSSSCG00060025854 UniProtKB/TrEMBL
  ENSSSCG00065021144 UniProtKB/TrEMBL
  ENSSSCG00070024269 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014256 ENTREZGENE
  ENSSSCT00000014256.5 UniProtKB/TrEMBL
  ENSSSCT00000039696.3 UniProtKB/TrEMBL
  ENSSSCT00000084410.2 UniProtKB/TrEMBL
  ENSSSCT00000088002.2 UniProtKB/TrEMBL
  ENSSSCT00025105456.1 UniProtKB/TrEMBL
  ENSSSCT00025105488.1 UniProtKB/TrEMBL
  ENSSSCT00025105510.1 UniProtKB/TrEMBL
  ENSSSCT00025105543.1 UniProtKB/TrEMBL
  ENSSSCT00030017619.1 UniProtKB/TrEMBL
  ENSSSCT00030017633.1 UniProtKB/TrEMBL
  ENSSSCT00030017643.1 UniProtKB/TrEMBL
  ENSSSCT00030017665.1 UniProtKB/TrEMBL
  ENSSSCT00035044423.1 UniProtKB/TrEMBL
  ENSSSCT00040067970.1 UniProtKB/TrEMBL
  ENSSSCT00040068089.1 UniProtKB/TrEMBL
  ENSSSCT00040068147.1 UniProtKB/TrEMBL
  ENSSSCT00045050952.1 UniProtKB/TrEMBL
  ENSSSCT00045051076.1 UniProtKB/TrEMBL
  ENSSSCT00045051201.1 UniProtKB/TrEMBL
  ENSSSCT00050052875.1 UniProtKB/TrEMBL
  ENSSSCT00050052878.1 UniProtKB/TrEMBL
  ENSSSCT00050052885.1 UniProtKB/TrEMBL
  ENSSSCT00055005022.1 UniProtKB/TrEMBL
  ENSSSCT00055005044.1 UniProtKB/TrEMBL
  ENSSSCT00055005064.1 UniProtKB/TrEMBL
  ENSSSCT00055005073.1 UniProtKB/TrEMBL
  ENSSSCT00060035020.1 UniProtKB/TrEMBL
  ENSSSCT00060035030.1 UniProtKB/TrEMBL
  ENSSSCT00060035038.1 UniProtKB/TrEMBL
  ENSSSCT00060035045.1 UniProtKB/TrEMBL
  ENSSSCT00065028142.1 UniProtKB/TrEMBL
  ENSSSCT00065028153.1 UniProtKB/TrEMBL
  ENSSSCT00065028167.1 UniProtKB/TrEMBL
  ENSSSCT00070048532.1 UniProtKB/TrEMBL
  ENSSSCT00070048535.1 UniProtKB/TrEMBL
  ENSSSCT00070048546.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.220.10 UniProtKB/TrEMBL
InterPro Macro_dom UniProtKB/TrEMBL
  Macro_dom-like UniProtKB/TrEMBL
KEGG Report ssc:100522538 UniProtKB/TrEMBL
NCBI Gene MACROD1 ENTREZGENE
PANTHER ADP-RIBOSE GLYCOHYDROLASE MACROD1 UniProtKB/TrEMBL
  GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED UniProtKB/TrEMBL
Pfam Macro UniProtKB/TrEMBL
PROSITE MACRO UniProtKB/TrEMBL
SMART A1pp UniProtKB/TrEMBL
Superfamily-SCOP SSF52949 UniProtKB/TrEMBL
UniProt A0A287BDZ2_PIG UniProtKB/TrEMBL
  A0A480XNH5_PIG UniProtKB/TrEMBL
  A0A4X1VCP7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VJE3_PIG UniProtKB/TrEMBL
  A0A4X1VJF2_PIG UniProtKB/TrEMBL
  A0A5G2QVC5_PIG UniProtKB/TrEMBL
  A0A5G2QZZ8_PIG UniProtKB/TrEMBL
  A0A8D0V2G2_PIG UniProtKB/TrEMBL
  A0A8D0VMJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VN24_PIG UniProtKB/TrEMBL
  A0A8D1EX93_PIG UniProtKB/TrEMBL
  A0A8D1MG99_PIG UniProtKB/TrEMBL
  A0A8D1PBZ1_PIG UniProtKB/TrEMBL
  A0A8D1UVK7_PIG UniProtKB/TrEMBL
  A0A8D2BF04_PIG UniProtKB/TrEMBL
  E7EBY5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98096 ENTREZGENE