XIAP (X-linked inhibitor of apoptosis) - Rat Genome Database

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Gene: XIAP (X-linked inhibitor of apoptosis) Sus scrofa
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Symbol: XIAP
Name: X-linked inhibitor of apoptosis
RGD ID: 13879782
Description: ENCODES a protein that exhibits protease binding (ortholog); scaffold protein binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of neuron apoptotic process (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; intrinsic apoptotic pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); autistic disorder (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: baculoviral IAP repeat-containing 4; BIRC4; E3 ubiquitin-protein ligase XIAP
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX101,399,812 - 101,440,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X101,399,374 - 101,440,021 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X116,234,274 - 116,253,044 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:18818484   PMID:30032202  


Genomics

Comparative Map Data
XIAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX101,399,812 - 101,440,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X101,399,374 - 101,440,021 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X116,234,274 - 116,253,044 (+)NCBISscrofa10.2Sscrofa10.2susScr3
XIAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X123,859,708 - 123,913,972 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX123,859,712 - 123,913,972 (+)EnsemblGRCh38hg38GRCh38
GRCh37X122,993,558 - 123,047,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X122,821,729 - 122,875,503 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X122,719,582 - 122,773,357NCBI
CeleraX123,378,893 - 123,432,624 (+)NCBICelera
Cytogenetic MapXq25NCBI
HuRefX112,377,835 - 112,430,903 (+)NCBIHuRef
CHM1_1X122,904,824 - 122,959,188 (+)NCBICHM1_1
T2T-CHM13v2.0X122,170,108 - 122,224,373 (+)NCBIT2T-CHM13v2.0
Xiap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X41,148,483 - 41,198,541 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX41,148,556 - 41,198,533 (+)EnsemblGRCm39 Ensembl
GRCm38X42,059,613 - 42,109,664 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX42,059,679 - 42,109,656 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X39,421,013 - 39,462,841 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X38,338,355 - 38,350,128 (+)NCBIMGSCv36mm8
CeleraX29,643,660 - 29,685,399 (+)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX23.19NCBI
Xiap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X125,756,107 - 125,803,979 (+)NCBIGRCr8
mRatBN7.2X120,890,537 - 120,938,413 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX120,897,907 - 120,934,700 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX123,009,934 - 123,046,397 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X126,531,344 - 126,567,796 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X124,125,427 - 124,161,835 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X128,409,425 - 128,455,786 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX128,409,472 - 128,453,000 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X128,500,115 - 128,546,515 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X3,011,520 - 3,047,798 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X3,013,139 - 3,049,418 (-)NCBI
CeleraX120,012,721 - 120,049,014 (+)NCBICelera
Cytogenetic MapXq35NCBI
Xiap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547310,827,435 - 10,840,604 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495547310,823,795 - 10,878,256 (-)NCBIChiLan1.0ChiLan1.0
XIAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X123,332,452 - 123,385,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X123,336,052 - 123,389,136 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X113,052,164 - 113,105,160 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X123,232,643 - 123,284,912 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX123,232,643 - 123,278,606 (+)Ensemblpanpan1.1panPan2
XIAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X95,300,234 - 95,356,103 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX95,331,827 - 95,351,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX81,399,414 - 81,419,171 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X97,072,115 - 97,127,995 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX97,072,142 - 97,127,986 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X94,548,275 - 94,568,035 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X96,304,355 - 96,324,070 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X96,093,813 - 96,113,573 (+)NCBIUU_Cfam_GSD_1.0
Xiap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X94,265,438 - 94,309,960 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364796,677,526 - 6,722,116 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364796,677,533 - 6,724,800 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
XIAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606536,593,463 - 36,643,836 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in XIAP
318 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 3 3 5 2 20 2 3 3
Low 1 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000056305   ⟹   ENSSSCP00000039589
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX101,399,812 - 101,440,013 (+)Ensembl
RefSeq Acc Id: NM_001097436   ⟹   NP_001090905
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X101,400,177 - 101,437,061 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079365   ⟹   XP_020935024
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X101,405,175 - 101,440,021 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079366   ⟹   XP_020935025
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X101,399,374 - 101,440,021 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079367   ⟹   XP_020935026
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X101,399,410 - 101,440,021 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079368   ⟹   XP_020935027
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X101,400,051 - 101,440,021 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020935025   ⟸   XM_021079366
- Peptide Label: isoform X2
- UniProtKB: A0A4X1W670 (UniProtKB/TrEMBL),   A1YPR8 (UniProtKB/TrEMBL),   A0A8D0JRV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935026   ⟸   XM_021079367
- Peptide Label: isoform X2
- UniProtKB: A0A4X1W670 (UniProtKB/TrEMBL),   A1YPR8 (UniProtKB/TrEMBL),   A0A8D0JRV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935027   ⟸   XM_021079368
- Peptide Label: isoform X2
- UniProtKB: A0A4X1W670 (UniProtKB/TrEMBL),   A1YPR8 (UniProtKB/TrEMBL),   A0A8D0JRV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001090905   ⟸   NM_001097436
- UniProtKB: A1YPR8 (UniProtKB/TrEMBL),   A0A4X1W670 (UniProtKB/TrEMBL),   A0A8D0JRV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935024   ⟸   XM_021079365
- Peptide Label: isoform X1
- UniProtKB: A0A287A6L6 (UniProtKB/TrEMBL),   A0A8D0XQ50 (UniProtKB/TrEMBL),   A0A8D0JRV3 (UniProtKB/TrEMBL),   A0A8D1B1H8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039589   ⟸   ENSSSCT00000056305
Protein Domains
BIRC2/3-like UBA   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025028 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032668 UniProtKB/TrEMBL
  ENSSSCG00015012722 UniProtKB/TrEMBL
  ENSSSCG00025074023 UniProtKB/TrEMBL
  ENSSSCG00030058954 UniProtKB/TrEMBL
  ENSSSCG00035073879 UniProtKB/TrEMBL
  ENSSSCG00040074269 UniProtKB/TrEMBL
  ENSSSCG00045038577 UniProtKB/TrEMBL
  ENSSSCG00050061358 UniProtKB/TrEMBL
  ENSSSCG00055030017 UniProtKB/TrEMBL
  ENSSSCG00060046623 UniProtKB/TrEMBL
  ENSSSCG00065035084 UniProtKB/TrEMBL
  ENSSSCG00070029254 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000056305 ENTREZGENE
  ENSSSCT00000056305.3 UniProtKB/TrEMBL
  ENSSSCT00005052189.1 UniProtKB/TrEMBL
  ENSSSCT00005052215.1 UniProtKB/TrEMBL
  ENSSSCT00015016851.1 UniProtKB/TrEMBL
  ENSSSCT00025101915.1 UniProtKB/TrEMBL
  ENSSSCT00030082293.1 UniProtKB/TrEMBL
  ENSSSCT00030082319.1 UniProtKB/TrEMBL
  ENSSSCT00035100187.1 UniProtKB/TrEMBL
  ENSSSCT00035100216.1 UniProtKB/TrEMBL
  ENSSSCT00040102688.1 UniProtKB/TrEMBL
  ENSSSCT00040102730.1 UniProtKB/TrEMBL
  ENSSSCT00045066930.1 UniProtKB/TrEMBL
  ENSSSCT00050083610.1 UniProtKB/TrEMBL
  ENSSSCT00050083613.1 UniProtKB/TrEMBL
  ENSSSCT00055059675.1 UniProtKB/TrEMBL
  ENSSSCT00055059680.1 UniProtKB/TrEMBL
  ENSSSCT00055059681.1 UniProtKB/TrEMBL
  ENSSSCT00055059689.1 UniProtKB/TrEMBL
  ENSSSCT00055059698.1 UniProtKB/TrEMBL
  ENSSSCT00060063303.1 UniProtKB/TrEMBL
  ENSSSCT00060063321.1 UniProtKB/TrEMBL
  ENSSSCT00065047759.1 UniProtKB/TrEMBL
  ENSSSCT00065047762.1 UniProtKB/TrEMBL
  ENSSSCT00065047770.1 UniProtKB/TrEMBL
  ENSSSCT00065047775.1 UniProtKB/TrEMBL
  ENSSSCT00070058727.1 UniProtKB/TrEMBL
  ENSSSCT00070058729.1 UniProtKB/TrEMBL
  ENSSSCT00070058732.1 UniProtKB/TrEMBL
  ENSSSCT00070058735.1 UniProtKB/TrEMBL
  ENSSSCT00070058737.1 UniProtKB/TrEMBL
  ENSSSCT00070058739.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro BIR_rpt UniProtKB/TrEMBL
  BIRC2-3-like_UBA UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  XIAP/BIRC8_UBA UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report ssc:100037300 UniProtKB/TrEMBL
NCBI Gene XIAP ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE XIAP UniProtKB/TrEMBL
  INHIBITOR OF APOPTOSIS UniProtKB/TrEMBL
Pfam BIR UniProtKB/TrEMBL
  BIRC2-3-like_UBA UniProtKB/TrEMBL
  zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE BIR_REPEAT_1 UniProtKB/TrEMBL
  BIR_REPEAT_2 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BIR UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP Inhibitor of apoptosis (IAP) repeat UniProtKB/TrEMBL
UniProt A0A287A6L6 ENTREZGENE
  A0A4X1W670 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1W675_PIG UniProtKB/TrEMBL
  A0A8D0JRV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MNT4_PIG UniProtKB/TrEMBL
  A0A8D0XQ50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1B1H8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1S861_PIG UniProtKB/TrEMBL
  A1YPR8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287A6L6 UniProtKB/TrEMBL