RNFT2 (ring finger protein, transmembrane 2) - Rat Genome Database

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Gene: RNFT2 (ring finger protein, transmembrane 2) Sus scrofa
Analyze
Symbol: RNFT2
Name: ring finger protein, transmembrane 2
RGD ID: 13867215
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); ubiquitin-protein transferase activity (inferred); INVOLVED IN cell population proliferation (inferred); Golgi organization (inferred); labyrinthine layer blood vessel development (inferred); FOUND IN 3M complex (inferred); Cul7-RING ubiquitin ligase complex (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RING finger and transmembrane domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1435,635,720 - 35,705,759 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11435,634,619 - 35,705,795 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21437,854,302 - 37,909,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RNFT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1435,635,720 - 35,705,759 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11435,634,619 - 35,705,795 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21437,854,302 - 37,909,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNFT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812116,738,315 - 116,853,631 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12116,738,178 - 116,853,631 (+)EnsemblGRCh38hg38GRCh38
GRCh3712117,176,120 - 117,291,436 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612115,660,479 - 115,775,819 (+)NCBINCBI36Build 36hg18NCBI36
Celera12116,805,647 - 116,920,975 (+)NCBICelera
Cytogenetic Map12q24.22NCBI
HuRef12114,185,846 - 114,300,958 (+)NCBIHuRef
CHM1_112117,143,744 - 117,259,100 (+)NCBICHM1_1
T2T-CHM13v2.012116,719,460 - 116,834,773 (+)NCBIT2T-CHM13v2.0
Rnft2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395118,328,799 - 118,388,518 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5118,328,801 - 118,383,181 (-)EnsemblGRCm39 Ensembl
GRCm385118,190,734 - 118,245,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5118,190,736 - 118,245,116 (-)EnsemblGRCm38mm10GRCm38
MGSCv375118,640,745 - 118,695,034 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365118,451,777 - 118,505,891 (-)NCBIMGSCv36mm8
Celera5115,285,895 - 115,340,481 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map558.2NCBI
Rnft2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81243,990,113 - 44,048,215 (+)NCBIGRCr8
mRatBN7.21238,329,217 - 38,387,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1238,329,269 - 38,387,290 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1239,504,615 - 39,562,635 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01240,118,423 - 40,176,437 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,171,375 - 39,229,393 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01243,940,929 - 44,008,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1243,940,929 - 44,008,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01245,773,943 - 45,839,516 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41239,461,846 - 39,520,071 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1239,988,776 - 40,046,543 (+)NCBICelera
Cytogenetic Map12q16NCBI
Rnft2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545514,259,753 - 14,329,500 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545514,257,044 - 14,331,296 (-)NCBIChiLan1.0ChiLan1.0
RNFT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210124,799,751 - 124,914,966 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112124,796,132 - 124,911,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012114,315,117 - 114,430,273 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112117,691,632 - 117,805,751 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12117,691,632 - 117,804,833 (+)Ensemblpanpan1.1panPan2
RNFT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12613,410,393 - 13,500,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2613,412,189 - 13,638,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2613,405,395 - 13,502,314 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02613,670,327 - 13,767,677 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2613,670,398 - 13,767,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12613,632,346 - 13,729,336 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02613,710,493 - 13,807,256 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02613,744,736 - 13,841,652 (+)NCBIUU_Cfam_GSD_1.0
Rnft2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118153,828,578 - 153,897,887 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365585,584,225 - 5,649,018 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365585,581,539 - 5,650,826 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNFT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111112,051,969 - 112,160,948 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11112,052,097 - 112,160,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037132,917,055 - 133,024,445 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnft2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474716,389,005 - 16,459,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474716,346,149 - 16,459,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNFT2
833 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10
Low 7 4 3 5 1 13 2 2 1
Below cutoff 3 1 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000010810   ⟹   ENSSSCP00000010527
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1435,635,720 - 35,705,759 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071876   ⟹   ENSSSCP00000069071
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1435,609,174 - 35,705,778 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090581   ⟹   ENSSSCP00000064492
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1435,634,623 - 35,705,762 (-)Ensembl
RefSeq Acc Id: XM_003132893   ⟹   XP_003132941
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11435,634,619 - 35,705,795 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_003132941   ⟸   XM_003132893
- UniProtKB: F1RKE5 (UniProtKB/TrEMBL),   A0A4X1TS62 (UniProtKB/TrEMBL),   A0A8D0RDD6 (UniProtKB/TrEMBL),   A0A8D1W3H8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000010527   ⟸   ENSSSCT00000010810
RefSeq Acc Id: ENSSSCP00000064492   ⟸   ENSSSCT00000090581
RefSeq Acc Id: ENSSSCP00000069071   ⟸   ENSSSCT00000071876
Protein Domains
F-box   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009862 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005007271 UniProtKB/TrEMBL
  ENSSSCG00015006455 UniProtKB/TrEMBL
  ENSSSCG00025025871 UniProtKB/TrEMBL
  ENSSSCG00030070255 UniProtKB/TrEMBL
  ENSSSCG00035078261 UniProtKB/TrEMBL
  ENSSSCG00040014897 UniProtKB/TrEMBL
  ENSSSCG00045000848 UniProtKB/TrEMBL
  ENSSSCG00045036373 UniProtKB/TrEMBL
  ENSSSCG00050062687 UniProtKB/TrEMBL
  ENSSSCG00055010662 UniProtKB/TrEMBL
  ENSSSCG00060055099 UniProtKB/TrEMBL
  ENSSSCG00065048209 UniProtKB/TrEMBL
  ENSSSCG00070011178 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010810 ENTREZGENE
  ENSSSCT00000010810.5 UniProtKB/TrEMBL
  ENSSSCT00005011263.1 UniProtKB/TrEMBL
  ENSSSCT00015008628.1 UniProtKB/TrEMBL
  ENSSSCT00015008654.1 UniProtKB/TrEMBL
  ENSSSCT00025035125.1 UniProtKB/TrEMBL
  ENSSSCT00025035373.1 UniProtKB/TrEMBL
  ENSSSCT00025035638.1 UniProtKB/TrEMBL
  ENSSSCT00030098273.1 UniProtKB/TrEMBL
  ENSSSCT00030098317.1 UniProtKB/TrEMBL
  ENSSSCT00035107118.1 UniProtKB/TrEMBL
  ENSSSCT00040020003.1 UniProtKB/TrEMBL
  ENSSSCT00045001234.1 UniProtKB/TrEMBL
  ENSSSCT00045001258.1 UniProtKB/TrEMBL
  ENSSSCT00045062787.1 UniProtKB/TrEMBL
  ENSSSCT00050085385.1 UniProtKB/TrEMBL
  ENSSSCT00050085388.1 UniProtKB/TrEMBL
  ENSSSCT00055020989.1 UniProtKB/TrEMBL
  ENSSSCT00055021082.1 UniProtKB/TrEMBL
  ENSSSCT00055021121.1 UniProtKB/TrEMBL
  ENSSSCT00060075051.1 UniProtKB/TrEMBL
  ENSSSCT00065065944.1 UniProtKB/TrEMBL
  ENSSSCT00065065955.1 UniProtKB/TrEMBL
  ENSSSCT00070021744.1 UniProtKB/TrEMBL
  ENSSSCT00070021760.1 UniProtKB/TrEMBL
  ENSSSCT00070021781.1 UniProtKB/TrEMBL
  ENSSSCT00070021799.1 UniProtKB/TrEMBL
  ENSSSCT00070021805.1 UniProtKB/TrEMBL
  ENSSSCT00070021818.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  RNFT1/2 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report ssc:100519873 UniProtKB/TrEMBL
NCBI Gene RNFT2 ENTREZGENE
PANTHER F-BOX DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR15860 UniProtKB/TrEMBL
  RING FINGER AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  WD40 REPEAT PROTEIN 12, 37 UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART FBOX UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt A0A4X1TRR7_PIG UniProtKB/TrEMBL
  A0A4X1TRX2_PIG UniProtKB/TrEMBL
  A0A4X1TS16_PIG UniProtKB/TrEMBL
  A0A4X1TS48_PIG UniProtKB/TrEMBL
  A0A4X1TS62 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TS69_PIG UniProtKB/TrEMBL
  A0A8D0RDD6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W3H8 ENTREZGENE, UniProtKB/TrEMBL
  F1RKE5 ENTREZGENE
UniProt Secondary F1RKE5 UniProtKB/TrEMBL
VGNC ID VGNC:92399 ENTREZGENE