RNFT2 (ring finger protein, transmembrane 2) - Rat Genome Database

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Gene: RNFT2 (ring finger protein, transmembrane 2) Canis lupus familiaris
Analyze
Symbol: RNFT2
Name: ring finger protein, transmembrane 2
RGD ID: 12365649
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN positive regulation of ERAD pathway (inferred); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC111092653; RING finger and transmembrane domain-containing protein 2; TMEM118; transmembrane protein 118; uncharacterized LOC111092653
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12613,410,393 - 13,500,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2613,412,189 - 13,638,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2613,405,395 - 13,502,314 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02613,670,327 - 13,767,677 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2613,670,398 - 13,767,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12613,632,346 - 13,729,336 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02613,710,493 - 13,807,256 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02613,744,736 - 13,841,652 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RNFT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12613,410,393 - 13,500,716 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2613,412,189 - 13,638,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2613,405,395 - 13,502,314 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02613,670,327 - 13,767,677 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2613,670,398 - 13,767,946 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12613,632,346 - 13,729,336 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02613,710,493 - 13,807,256 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02613,744,736 - 13,841,652 (+)NCBIUU_Cfam_GSD_1.0
RNFT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812116,738,315 - 116,853,631 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12116,738,178 - 116,853,631 (+)EnsemblGRCh38hg38GRCh38
GRCh3712117,176,120 - 117,291,436 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612115,660,479 - 115,775,819 (+)NCBINCBI36Build 36hg18NCBI36
Celera12116,805,647 - 116,920,975 (+)NCBICelera
Cytogenetic Map12q24.22NCBI
HuRef12114,185,846 - 114,300,958 (+)NCBIHuRef
CHM1_112117,143,744 - 117,259,100 (+)NCBICHM1_1
T2T-CHM13v2.012116,719,460 - 116,834,773 (+)NCBIT2T-CHM13v2.0
Rnft2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395118,328,799 - 118,388,518 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5118,328,801 - 118,383,181 (-)EnsemblGRCm39 Ensembl
GRCm385118,190,734 - 118,245,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5118,190,736 - 118,245,116 (-)EnsemblGRCm38mm10GRCm38
MGSCv375118,640,745 - 118,695,034 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365118,451,777 - 118,505,891 (-)NCBIMGSCv36mm8
Celera5115,285,895 - 115,340,481 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map558.2NCBI
Rnft2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81243,990,113 - 44,048,215 (+)NCBIGRCr8
mRatBN7.21238,329,217 - 38,387,303 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1238,329,269 - 38,387,290 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1239,504,615 - 39,562,635 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01240,118,423 - 40,176,437 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01239,171,375 - 39,229,393 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01243,940,929 - 44,008,685 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1243,940,929 - 44,008,685 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01245,773,943 - 45,839,516 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41239,461,846 - 39,520,071 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1239,988,776 - 40,046,543 (+)NCBICelera
Cytogenetic Map12q16NCBI
Rnft2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545514,259,753 - 14,329,500 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545514,257,044 - 14,331,296 (-)NCBIChiLan1.0ChiLan1.0
RNFT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210124,799,751 - 124,914,966 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112124,796,132 - 124,911,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012114,315,117 - 114,430,273 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112117,691,632 - 117,805,751 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12117,691,632 - 117,804,833 (+)Ensemblpanpan1.1panPan2
Rnft2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118153,828,578 - 153,897,887 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365585,584,225 - 5,649,018 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365585,581,539 - 5,650,826 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNFT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1435,635,720 - 35,705,759 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11435,634,619 - 35,705,795 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21437,854,302 - 37,909,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RNFT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111112,051,969 - 112,160,948 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11112,052,097 - 112,160,793 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037132,917,055 - 133,024,445 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnft2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474716,389,005 - 16,459,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474716,346,149 - 16,459,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RNFT2
1132 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 2 17 1 6 1 6 1 12 8 10 6
Low 1 3 5 5 5 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014107903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022410616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038436823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038511726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038575219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038639407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_848954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005302373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005314858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005345456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005379216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005413041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000014763   ⟹   ENSCAFP00000013656
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2613,412,189 - 13,505,531 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000014770   ⟹   ENSCAFP00000013663
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2613,520,983 - 13,638,246 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000044155   ⟹   ENSCAFP00000041175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2613,412,189 - 13,476,752 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000046460   ⟹   ENSCAFP00000042791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2613,520,644 - 13,638,258 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000064680   ⟹   ENSCAFP00000052901
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2613,412,189 - 13,574,306 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079176   ⟹   ENSCAFP00000066440
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2613,412,189 - 13,638,246 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000079863   ⟹   ENSCAFP00000062873
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2613,412,189 - 13,638,246 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045725   ⟹   ENSCAFP00845035885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2613,670,398 - 13,767,946 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045849   ⟹   ENSCAFP00845035996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2613,670,398 - 13,761,960 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845045958   ⟹   ENSCAFP00845036079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2613,670,398 - 13,760,776 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845046090   ⟹   ENSCAFP00845036188
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2613,670,418 - 13,739,495 (+)Ensembl
RefSeq Acc Id: XM_014107903   ⟹   XP_013963378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12613,410,394 - 13,479,526 (+)NCBI
Dog10K_Boxer_Tasha2613,405,396 - 13,474,132 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022410613   ⟹   XP_022266321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12613,410,394 - 13,479,526 (+)NCBI
Dog10K_Boxer_Tasha2613,405,396 - 13,474,132 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022410614   ⟹   XP_022266322
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12613,410,393 - 13,472,679 (+)NCBI
Dog10K_Boxer_Tasha2613,405,395 - 13,464,064 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022410615   ⟹   XP_022266323
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12613,410,394 - 13,500,215 (+)NCBI
Dog10K_Boxer_Tasha2613,405,395 - 13,494,957 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022410616   ⟹   XP_022266324
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12613,410,394 - 13,500,716 (+)NCBI
Dog10K_Boxer_Tasha2613,405,395 - 13,495,291 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038436816   ⟹   XP_038292744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,328 - 13,739,495 (+)NCBI
RefSeq Acc Id: XM_038436817   ⟹   XP_038292745
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,328 - 13,739,495 (+)NCBI
RefSeq Acc Id: XM_038436818   ⟹   XP_038292746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,328 - 13,739,495 (+)NCBI
RefSeq Acc Id: XM_038436819   ⟹   XP_038292747
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,327 - 13,729,434 (+)NCBI
RefSeq Acc Id: XM_038436821   ⟹   XP_038292749
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,327 - 13,767,677 (+)NCBI
RefSeq Acc Id: XM_038436822   ⟹   XP_038292750
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,327 - 13,760,320 (+)NCBI
RefSeq Acc Id: XM_038436823   ⟹   XP_038292751
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,327 - 13,760,655 (+)NCBI
RefSeq Acc Id: XM_038458909   ⟹   XP_038314837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2613,405,395 - 13,502,314 (+)NCBI
RefSeq Acc Id: XM_038511720   ⟹   XP_038367648
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,347 - 13,701,166 (+)NCBI
RefSeq Acc Id: XM_038511721   ⟹   XP_038367649
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,347 - 13,701,166 (+)NCBI
RefSeq Acc Id: XM_038511722   ⟹   XP_038367650
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,347 - 13,701,166 (+)NCBI
RefSeq Acc Id: XM_038511723   ⟹   XP_038367651
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,346 - 13,691,098 (+)NCBI
RefSeq Acc Id: XM_038511724   ⟹   XP_038367652
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,346 - 13,729,336 (+)NCBI
RefSeq Acc Id: XM_038511725   ⟹   XP_038367653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,346 - 13,721,972 (+)NCBI
RefSeq Acc Id: XM_038511726   ⟹   XP_038367654
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,346 - 13,722,305 (+)NCBI
RefSeq Acc Id: XM_038575213   ⟹   XP_038431141
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,737 - 13,813,446 (+)NCBI
RefSeq Acc Id: XM_038575214   ⟹   XP_038431142
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,737 - 13,813,446 (+)NCBI
RefSeq Acc Id: XM_038575215   ⟹   XP_038431143
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,737 - 13,813,446 (+)NCBI
RefSeq Acc Id: XM_038575216   ⟹   XP_038431144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,736 - 13,803,388 (+)NCBI
RefSeq Acc Id: XM_038575217   ⟹   XP_038431145
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,736 - 13,841,652 (+)NCBI
RefSeq Acc Id: XM_038575218   ⟹   XP_038431146
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,736 - 13,834,295 (+)NCBI
RefSeq Acc Id: XM_038575219   ⟹   XP_038431147
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,736 - 13,834,629 (+)NCBI
RefSeq Acc Id: XM_038639401   ⟹   XP_038495329
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,494 - 13,779,092 (+)NCBI
RefSeq Acc Id: XM_038639402   ⟹   XP_038495330
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,494 - 13,779,092 (+)NCBI
RefSeq Acc Id: XM_038639403   ⟹   XP_038495331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,494 - 13,779,092 (+)NCBI
RefSeq Acc Id: XM_038639404   ⟹   XP_038495332
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,493 - 13,769,020 (+)NCBI
RefSeq Acc Id: XM_038639405   ⟹   XP_038495333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,493 - 13,807,256 (+)NCBI
RefSeq Acc Id: XM_038639406   ⟹   XP_038495334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,493 - 13,799,900 (+)NCBI
RefSeq Acc Id: XM_038639407   ⟹   XP_038495335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,493 - 13,800,234 (+)NCBI
RefSeq Acc Id: XM_848954   ⟹   XP_854047
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12613,410,394 - 13,479,526 (+)NCBI
Dog10K_Boxer_Tasha2613,405,396 - 13,474,132 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005302373
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02613,670,327 - 13,767,676 (+)NCBI
RefSeq Acc Id: XR_005314858
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2613,405,395 - 13,502,313 (+)NCBI
RefSeq Acc Id: XR_005345456
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12613,632,346 - 13,729,330 (+)NCBI
RefSeq Acc Id: XR_005379216
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02613,744,736 - 13,841,651 (+)NCBI
RefSeq Acc Id: XR_005413041
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02613,710,493 - 13,807,255 (+)NCBI
Protein Sequences
Protein RefSeqs XP_013963378 (Get FASTA)   NCBI Sequence Viewer  
  XP_022266321 (Get FASTA)   NCBI Sequence Viewer  
  XP_022266322 (Get FASTA)   NCBI Sequence Viewer  
  XP_022266323 (Get FASTA)   NCBI Sequence Viewer  
  XP_022266324 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292744 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292745 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292746 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292747 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292749 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292750 (Get FASTA)   NCBI Sequence Viewer  
  XP_038292751 (Get FASTA)   NCBI Sequence Viewer  
  XP_038314837 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367648 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367649 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367650 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367651 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367652 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367653 (Get FASTA)   NCBI Sequence Viewer  
  XP_038367654 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431141 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431142 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431143 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431144 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431145 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431146 (Get FASTA)   NCBI Sequence Viewer  
  XP_038431147 (Get FASTA)   NCBI Sequence Viewer  
  XP_038495329 (Get FASTA)   NCBI Sequence Viewer  
  XP_038495330 (Get FASTA)   NCBI Sequence Viewer  
  XP_038495331 (Get FASTA)   NCBI Sequence Viewer  
  XP_038495332 (Get FASTA)   NCBI Sequence Viewer  
  XP_038495333 (Get FASTA)   NCBI Sequence Viewer  
  XP_038495334 (Get FASTA)   NCBI Sequence Viewer  
  XP_038495335 (Get FASTA)   NCBI Sequence Viewer  
  XP_854047 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000013656.6
  ENSCAFP00000041175.2
  ENSCAFP00000052901.2
  ENSCAFP00000062873.2
  ENSCAFP00030041514.1
  ENSCAFP00845035885
  ENSCAFP00845035885.1
  ENSCAFP00845035996
  ENSCAFP00845035996.1
  ENSCAFP00845036079
  ENSCAFP00845036079.1
  ENSCAFP00845036188
  ENSCAFP00845036188.1
Reference Protein Sequences
RefSeq Acc Id: XP_013963378   ⟸   XM_014107903
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8P0PBN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_854047   ⟸   XM_848954
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8P0PBN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022266322   ⟸   XM_022410614
- Peptide Label: isoform X2
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022266324   ⟸   XM_022410616
- Peptide Label: isoform X5
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022266323   ⟸   XM_022410615
- Peptide Label: isoform X4
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL),   A0A8P0P2K2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022266321   ⟸   XM_022410613
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8P0PBN3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000052901   ⟸   ENSCAFT00000064680
RefSeq Acc Id: ENSCAFP00000066440   ⟸   ENSCAFT00000079176
RefSeq Acc Id: ENSCAFP00000013656   ⟸   ENSCAFT00000014763
RefSeq Acc Id: ENSCAFP00000013663   ⟸   ENSCAFT00000014770
RefSeq Acc Id: ENSCAFP00000041175   ⟸   ENSCAFT00000044155
RefSeq Acc Id: ENSCAFP00000062873   ⟸   ENSCAFT00000079863
RefSeq Acc Id: ENSCAFP00000042791   ⟸   ENSCAFT00000046460
RefSeq Acc Id: XP_038367652   ⟸   XM_038511724
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038367654   ⟸   XM_038511726
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038367653   ⟸   XM_038511725
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038367651   ⟸   XM_038511723
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038367650   ⟸   XM_038511722
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038367649   ⟸   XM_038511721
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038367648   ⟸   XM_038511720
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038495333   ⟸   XM_038639405
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038495335   ⟸   XM_038639407
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038495334   ⟸   XM_038639406
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038495332   ⟸   XM_038639404
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038495331   ⟸   XM_038639403
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038495330   ⟸   XM_038639402
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038495329   ⟸   XM_038639401
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038292749   ⟸   XM_038436821
- Peptide Label: isoform X3
- UniProtKB: A0A8I3S5N4 (UniProtKB/TrEMBL),   A0A8I3S9S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292751   ⟸   XM_038436823
- Peptide Label: isoform X5
- UniProtKB: A0A8I3S5N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292750   ⟸   XM_038436822
- Peptide Label: isoform X4
- UniProtKB: A0A8I3S5N4 (UniProtKB/TrEMBL),   A0A8I3Q8L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292747   ⟸   XM_038436819
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S5N4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292746   ⟸   XM_038436818
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8I3PSJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292745   ⟸   XM_038436817
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8I3PSJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038292744   ⟸   XM_038436816
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8I3PSJ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038314837   ⟸   XM_038458909
- Peptide Label: isoform X3
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL),   A0A8P0SUZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431145   ⟸   XM_038575217
- Peptide Label: isoform X3
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL),   A0A8P0SUZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431147   ⟸   XM_038575219
- Peptide Label: isoform X5
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431146   ⟸   XM_038575218
- Peptide Label: isoform X4
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL),   A0A8P0P2K2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431144   ⟸   XM_038575216
- Peptide Label: isoform X2
- UniProtKB: A0A8P0NBK9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431143   ⟸   XM_038575215
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8P0PBN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431142   ⟸   XM_038575214
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8P0PBN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038431141   ⟸   XM_038575213
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RTQ2 (UniProtKB/TrEMBL),   A0A8P0PBN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845035885   ⟸   ENSCAFT00845045725
RefSeq Acc Id: ENSCAFP00845036188   ⟸   ENSCAFT00845046090
RefSeq Acc Id: ENSCAFP00845035996   ⟸   ENSCAFT00845045849
RefSeq Acc Id: ENSCAFP00845036079   ⟸   ENSCAFT00845045958
Protein Domains
RING-type

Promoters
RGD ID:13687915
Promoter ID:EPDNEW_C5983
Type:single initiation site
Name:RNFT2_1
Description:ring finger protein, transmembrane 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12613,410,212 - 13,410,272EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000009295 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025711 UniProtKB/TrEMBL
  ENSCAFG00845025915 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000014763.6 UniProtKB/TrEMBL
  ENSCAFT00000044155.4 UniProtKB/TrEMBL
  ENSCAFT00000064680.2 UniProtKB/TrEMBL
  ENSCAFT00000079863.2 UniProtKB/TrEMBL
  ENSCAFT00030047480.1 UniProtKB/TrEMBL
  ENSCAFT00845045725 ENTREZGENE
  ENSCAFT00845045725.1 UniProtKB/TrEMBL
  ENSCAFT00845045849 ENTREZGENE
  ENSCAFT00845045849.1 UniProtKB/TrEMBL
  ENSCAFT00845045958 ENTREZGENE
  ENSCAFT00845045958.1 UniProtKB/TrEMBL
  ENSCAFT00845046090 ENTREZGENE
  ENSCAFT00845046090.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro RNFT1/2 UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report cfa:611303 UniProtKB/TrEMBL
NCBI Gene RNFT2 ENTREZGENE
PANTHER PTHR15860 UniProtKB/TrEMBL
  RING FINGER AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/TrEMBL
PROSITE ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
UniProt A0A8C0RTQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PSJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q8L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S5N4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3S9S2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NBK9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P2K2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PBN3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SUZ1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45678 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 RNFT2  ring finger protein, transmembrane 2  LOC111092653  uncharacterized LOC111092653  Data merged from RGD:13287911 737654 PROVISIONAL