IFN-OMEGA-4 (interferon omega 4) - Rat Genome Database

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Gene: IFN-OMEGA-4 (interferon omega 4) Sus scrofa
Analyze
No known orthologs.
Symbol: IFN-OMEGA-4 (Ensembl: IFN-OMEGA-3)
Name: interferon omega 4 (Ensembl:interferon omega 3)
RGD ID: 13845171
Description: ENCODES a protein that exhibits cytokine activity (inferred); cytokine receptor binding (inferred); INVOLVED IN defense response (inferred); defense response to virus (inferred); response to exogenous dsRNA (inferred); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1201,334,366 - 201,334,938 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11201,334,366 - 201,334,938 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,835,908 - 224,836,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:19792998   PMID:20406849   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in IFN-OMEGA-4
8 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 2 1 3 3 1 10 1 2
Below cutoff 4 1 2 7 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005673   ⟹   ENSSSCP00000005532
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1201,334,366 - 201,334,938 (-)Ensembl
RefSeq Acc Id: NM_001164852   ⟹   NP_001158324
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11201,334,366 - 201,334,938 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001158324 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACV42425 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000005532
  ENSSSCP00000005532.1
  ENSSSCP00025023508.1
  ENSSSCP00035017202.1
  ENSSSCP00050018301.1
  ENSSSCP00055012153.1
  ENSSSCP00055012207.1
  ENSSSCP00070052077.1
Reference Protein Sequences
RefSeq Acc Id: NP_001158324   ⟸   NM_001164852
- Peptide Label: precursor
- UniProtKB: C8CKC7 (UniProtKB/TrEMBL),   A0A4X1WC30 (UniProtKB/TrEMBL),   A0A8D1TCV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005532   ⟸   ENSSSCT00000005673


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031850 Ensembl
  ENSSSCG00000057864 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025040779 UniProtKB/TrEMBL
  ENSSSCG00035032471 UniProtKB/TrEMBL
  ENSSSCG00050033169 UniProtKB/TrEMBL
  ENSSSCG00055007926 UniProtKB/TrEMBL
  ENSSSCG00055007959 UniProtKB/TrEMBL
  ENSSSCG00070030361 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005673 ENTREZGENE
  ENSSSCT00000005673.2 UniProtKB/TrEMBL
  ENSSSCT00025055356.1 UniProtKB/TrEMBL
  ENSSSCT00035043015.1 UniProtKB/TrEMBL
  ENSSSCT00050044479.1 UniProtKB/TrEMBL
  ENSSSCT00055015464.1 UniProtKB/TrEMBL
  ENSSSCT00055015530.1 UniProtKB/TrEMBL
  ENSSSCT00070061096.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/TrEMBL
InterPro 4_helix_cytokine-like_core UniProtKB/TrEMBL
  Interferon_alpha/beta/delta UniProtKB/TrEMBL
KEGG Report ssc:100156149 UniProtKB/TrEMBL
NCBI Gene IFN-OMEGA-4 ENTREZGENE
PANTHER INTERFERON OMEGA-1 UniProtKB/TrEMBL
  PTHR11691 UniProtKB/TrEMBL
Pfam Interferon UniProtKB/TrEMBL
PRINTS INTERFERONAB UniProtKB/TrEMBL
PROSITE INTERFERON_A_B_D UniProtKB/TrEMBL
SMART IFabd UniProtKB/TrEMBL
Superfamily-SCOP SSF47266 UniProtKB/TrEMBL
UniProt A0A4X1WC30 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TCV3 ENTREZGENE, UniProtKB/TrEMBL
  C8CKC7 ENTREZGENE, UniProtKB/TrEMBL