PTMAP12 (prothymosin alpha pseudogene 12) - Rat Genome Database

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Gene: PTMAP12 (prothymosin alpha pseudogene 12) Homo sapiens
Analyze
Symbol: PTMAP12
Name: prothymosin alpha pseudogene 12
RGD ID: 13799340
HGNC Page HGNC:53982
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: prothymosin alpha-like
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: PTMA  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38994,346,998 - 94,347,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl994,347,234 - 94,347,563 (-)EnsemblGRCh38hg38GRCh38
GRCh37997,109,280 - 97,110,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36996,148,562 - 96,150,667 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9q22.32NCBI
CHM1_1997,255,987 - 97,256,340 (-)NCBICHM1_1
T2T-CHM13v2.09106,516,612 - 106,517,339 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:26638075  


Genomics

Comparative Map Data
PTMAP12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38994,346,998 - 94,347,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl994,347,234 - 94,347,563 (-)EnsemblGRCh38hg38GRCh38
GRCh37997,109,280 - 97,110,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36996,148,562 - 96,150,667 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9q22.32NCBI
CHM1_1997,255,987 - 97,256,340 (-)NCBICHM1_1
T2T-CHM13v2.09106,516,612 - 106,517,339 (-)NCBIT2T-CHM13v2.0
LOC611067
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1723,277,186 - 23,277,583 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha722,801,001 - 22,801,399 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0723,024,190 - 23,024,594 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1722,935,845 - 22,936,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0723,029,280 - 23,029,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0723,172,308 - 23,172,706 (+)NCBIUU_Cfam_GSD_1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 5 1
Low 1159 1153 704 138 567 48 2295 487 1233 55 634 841 90 790 1460
Below cutoff 856 1262 570 190 566 133 1291 1089 1835 60 403 330 57 354 915

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000635020
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl994,347,234 - 94,347,563 (-)Ensembl
RefSeq Acc Id: XM_017015408   ⟹   XP_016870897
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38994,347,222 - 94,348,219 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:53982 AgrOrtholog
COSMIC PTMAP12 COSMIC
Ensembl Genes ENSG00000282886 Ensembl
GTEx ENSG00000282886 GTEx
HGNC ID HGNC:53982 ENTREZGENE
Human Proteome Map PTMAP12 Human Proteome Map
NCBI Gene PTMAP12 ENTREZGENE