LOC611067 (prothymosin alpha-like) - Rat Genome Database

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Gene: LOC611067 (prothymosin alpha-like) Canis lupus familiaris
Analyze
Symbol: LOC611067
Name: prothymosin alpha-like
RGD ID: 12119968
Description: ENCODES a protein that exhibits histone binding (inferred); INVOLVED IN negative regulation of apoptotic process (inferred); positive regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1723,277,186 - 23,277,583 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha722,801,001 - 22,801,399 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0723,024,190 - 23,024,594 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1722,935,845 - 22,936,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0723,029,280 - 23,029,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0723,172,308 - 23,172,706 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC611067
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1723,277,186 - 23,277,583 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha722,801,001 - 22,801,399 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0723,024,190 - 23,024,594 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1722,935,845 - 22,936,243 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0723,029,280 - 23,029,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0723,172,308 - 23,172,706 (+)NCBIUU_Cfam_GSD_1.0
PTMAP12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38994,346,998 - 94,347,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl994,347,234 - 94,347,563 (-)EnsemblGRCh38hg38GRCh38
GRCh37997,109,280 - 97,110,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36996,148,562 - 96,150,667 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9q22.32NCBI
CHM1_1997,255,987 - 97,256,340 (-)NCBICHM1_1
T2T-CHM13v2.09106,516,612 - 106,517,339 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in LOC611067
26 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_038482613   ⟹   XP_038338541
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1722,935,845 - 22,936,243 (+)NCBI
RefSeq Acc Id: XM_038541769   ⟹   XP_038397697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0723,172,308 - 23,172,706 (+)NCBI
RefSeq Acc Id: XM_038605893   ⟹   XP_038461821
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0723,029,280 - 23,029,678 (+)NCBI
RefSeq Acc Id: XM_038670604   ⟹   XP_038526532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0723,024,190 - 23,024,594 (+)NCBI
RefSeq Acc Id: XM_848699   ⟹   XP_853792
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1723,277,186 - 23,277,583 (+)NCBI
Dog10K_Boxer_Tasha722,801,001 - 22,801,399 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_853792   ⟸   XM_848699
- UniProtKB: A0A8C0KWV5 (UniProtKB/TrEMBL),   A0A8C0MAT7 (UniProtKB/TrEMBL),   A0A8I3NC46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038338541   ⟸   XM_038482613
RefSeq Acc Id: XP_038461821   ⟸   XM_038605893
RefSeq Acc Id: XP_038526532   ⟸   XM_038670604
- UniProtKB: A0A8C0KWV5 (UniProtKB/TrEMBL),   A0A8C0MAT7 (UniProtKB/TrEMBL),   A0A8I3NC46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397697   ⟸   XM_038541769
- UniProtKB: A0A8C0KWV5 (UniProtKB/TrEMBL),   A0A8C0MAT7 (UniProtKB/TrEMBL),   A0A8I3NC46 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000055163 UniProtKB/TrEMBL
  ENSCAFG00030002722 UniProtKB/TrEMBL
  ENSCAFG00040009856 UniProtKB/TrEMBL
  ENSCAFG00845008829 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000109709.1 UniProtKB/TrEMBL
  ENSCAFT00030005050.1 UniProtKB/TrEMBL
  ENSCAFT00040018244.1 UniProtKB/TrEMBL
  ENSCAFT00845015501 ENTREZGENE
  ENSCAFT00845015501.1 UniProtKB/TrEMBL
InterPro Pro/parathymosin UniProtKB/TrEMBL
NCBI Gene LOC611067 ENTREZGENE
PANTHER PROTHYMOSIN ALPHA UniProtKB/TrEMBL
  PTHR22745 UniProtKB/TrEMBL
Pfam Prothymosin UniProtKB/TrEMBL
UniProt A0A8C0KWV5 ENTREZGENE
  A0A8C0MAT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NC46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PJA5_CANLF UniProtKB/TrEMBL