SOCS2P1 (suppressor of cytokine signaling 2 pseudogene 1) - Rat Genome Database

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Gene: SOCS2P1 (suppressor of cytokine signaling 2 pseudogene 1) Homo sapiens
Analyze
Symbol: SOCS2P1
Name: suppressor of cytokine signaling 2 pseudogene 1
RGD ID: 1352978
HGNC Page HGNC:16069
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: SOCS2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382033,187,195 - 33,187,839 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2033,187,391 - 33,188,292 (+)EnsemblGRCh38hg38GRCh38
GRCh372031,775,001 - 31,775,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362031,238,758 - 31,239,859 (+)NCBINCBI36Build 36hg18NCBI36
Celera2028,529,088 - 28,529,989 (+)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2028,562,839 - 28,563,740 (+)NCBIHuRef
CHM1_12031,676,307 - 31,677,208 (+)NCBICHM1_1
T2T-CHM13v2.02034,914,427 - 34,915,071 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:156
Interacting mature miRNAs:156
Transcripts:ENST00000417727
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 1 2 2 1
Below cutoff 73 74 42 11 44 3 109 54 218 9 217 49 8 30 74

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000417727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2033,187,391 - 33,188,292 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SOCS2P1 COSMIC
Ensembl Genes ENSG00000237662 Ensembl
GTEx ENSG00000237662 GTEx
HGNC ID HGNC:16069 ENTREZGENE
Human Proteome Map SOCS2P1 Human Proteome Map
NCBI Gene 276719 ENTREZGENE
PharmGKB PA134947134 PharmGKB