TCF19 (transcription factor 19) - Rat Genome Database

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Gene: TCF19 (transcription factor 19) Homo sapiens
Analyze
Symbol: TCF19
Name: transcription factor 19
RGD ID: 1345711
HGNC Page HGNC:11629
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within G1/S transition of mitotic cell cycle and type B pancreatic cell proliferation. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: SC1; SC1(TCF19)-6; SC1(TCF19)-7; SC1-1; SCI(TCF19)-4; TCF-19; transcription factor SC1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,158,589 - 31,164,215 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,158,331 - 31,167,159 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,126,366 - 31,131,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,234,282 - 31,239,971 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,235,225 - 31,238,517NCBI
Celera632,726,529 - 32,732,214 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,928,725 - 30,934,410 (+)NCBIHuRef
CHM1_1631,128,403 - 31,134,092 (+)NCBICHM1_1
T2T-CHM13v2.0631,026,273 - 31,031,895 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
1,1-dichloroethene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-hydroxypropanoic acid  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
alpha-pinene  (EXP)
aristolochic acid A  (EXP)
arsenous acid  (EXP)
azathioprine  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (EXP)
benzo[b]fluoranthene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (EXP)
buta-1,3-diene  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (ISO)
calcitriol  (EXP)
carbon nanotube  (ISO)
cefaloridine  (ISO)
CGP 52608  (EXP)
chromium(6+)  (ISO)
chrysene  (ISO)
cisplatin  (EXP)
cobalt dichloride  (EXP,ISO)
cocaine  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
cyclosporin A  (EXP)
D-glucose  (EXP)
dexamethasone  (EXP)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
dieldrin  (ISO)
dioxygen  (EXP)
dorsomorphin  (EXP)
Enterolactone  (EXP)
ethyl methanesulfonate  (EXP)
formaldehyde  (EXP)
FR900359  (EXP)
fulvestrant  (EXP)
furan  (ISO)
glucose  (EXP)
glycerol 2-phosphate  (EXP)
glycidol  (ISO)
L-ascorbic acid  (EXP)
Lasiocarpine  (EXP)
leflunomide  (EXP)
lidocaine  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
naphthalene  (ISO)
nickel dichloride  (ISO)
nitrofen  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP)
paraquat  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
PhIP  (ISO)
phytoestrogen  (EXP)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (EXP)
rac-lactic acid  (EXP)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (EXP)
senecionine  (ISO)
silicon dioxide  (EXP)
sirolimus  (EXP)
sodium arsenite  (EXP)
sodium fluoride  (ISO)
Soman  (ISO)
sulforaphane  (EXP)
sunitinib  (EXP)
testosterone  (EXP)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vincristine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. A new growth-regulated complementary DNA with the sequence of a putative trans-activating factor. Ku DH, etal., Cell Growth Differ 1991 Apr;2(4):179-86.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8595903   PMID:10485890   PMID:10777095   PMID:12477932   PMID:14574404   PMID:14702039   PMID:15342556   PMID:15489334   PMID:16344560   PMID:16702430   PMID:19851445   PMID:20211142  
PMID:20587610   PMID:21076979   PMID:21244100   PMID:21323541   PMID:21516116   PMID:21801394   PMID:21832049   PMID:21873635   PMID:21900206   PMID:21912425   PMID:23760081   PMID:23860123  
PMID:23955597   PMID:24509480   PMID:25416956   PMID:28514442   PMID:29042441   PMID:30509085   PMID:30585266   PMID:31515488   PMID:31746185   PMID:32016966   PMID:32296183   PMID:33961781  
PMID:34085947   PMID:34369624   PMID:34610795   PMID:35563538   PMID:38579171  


Genomics

Comparative Map Data
TCF19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,158,589 - 31,164,215 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,158,331 - 31,167,159 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,126,366 - 31,131,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,234,282 - 31,239,971 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,235,225 - 31,238,517NCBI
Celera632,726,529 - 32,732,214 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,928,725 - 30,934,410 (+)NCBIHuRef
CHM1_1631,128,403 - 31,134,092 (+)NCBICHM1_1
T2T-CHM13v2.0631,026,273 - 31,031,895 (+)NCBIT2T-CHM13v2.0
Tcf19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,823,627 - 35,827,730 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,823,631 - 35,827,721 (-)EnsemblGRCm39 Ensembl
GRCm381735,512,730 - 35,516,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,512,734 - 35,516,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,649,680 - 35,653,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,120,787 - 35,124,807 (-)NCBIMGSCv36mm8
Celera1739,027,683 - 39,031,767 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.69NCBI
Tcf19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,223,464 - 3,227,569 (+)NCBIGRCr8
mRatBN7.2203,218,756 - 3,222,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,218,693 - 3,223,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,280,083 - 3,284,200 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,285,054 - 3,289,173 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0203,309,260 - 3,313,380 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,740,454 - 3,746,964 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,744,395 - 3,746,964 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,831,137 - 5,833,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20645,956 - 650,058 (+)NCBICelera
Cytogenetic Map20p12NCBI
Tcf19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583989,388 - 994,908 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583989,388 - 994,180 (+)NCBIChiLan1.0ChiLan1.0
TCF19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,720,267 - 45,725,700 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,684,681 - 41,688,874 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,904,470 - 30,909,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,769,855 - 31,775,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,769,893 - 31,775,236 (+)Ensemblpanpan1.1panPan2
TCF19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112855,321 - 859,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12854,611 - 858,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12992,755 - 996,522 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01293,320 - 97,092 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1293,336 - 97,059 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112858,936 - 862,700 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012927,196 - 930,963 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012994,786 - 998,552 (+)NCBIUU_Cfam_GSD_1.0
Tcf19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,456,593 - 34,460,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837821,861 - 826,088 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837821,884 - 825,766 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,558,384 - 23,562,069 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,558,326 - 23,562,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,271,544 - 27,275,261 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,310,999 - 41,319,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,311,005 - 41,319,042 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,848,956 - 30,854,387 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,765,742 - 24,770,135 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,766,212 - 24,770,136 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TCF19
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001105563.1(CCHCR1):c.168C>A (p.Phe56Leu) single nucleotide variant Malignant melanoma [RCV000067278] Chr6:31157433 [GRCh38]
Chr6:31125210 [GRCh37]
Chr6:31233189 [NCBI36]
Chr6:6p21.33
not provided
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
Single allele complex Breast ductal adenocarcinoma [RCV000207259] Chr6:31085200..31324647 [GRCh37]
Chr6:6p21.33
uncertain significance
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32
uncertain significance
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1
pathogenic
GRCh37/hg19 6p21.33-21.31(chr6:31036397-34088832)x3 copy number gain not provided [RCV001005791] Chr6:31036397..34088832 [GRCh37]
Chr6:6p21.33-21.31
likely pathogenic
NC_000006.11:g.(?_30695893)_(31937492_?)dup duplication not provided [RCV003107453] Chr6:30695893..31937492 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.557G>A (p.Arg186Gln) single nucleotide variant not provided [RCV000886602] Chr6:31161765 [GRCh38]
Chr6:31129542 [GRCh37]
Chr6:6p21.33
benign
NM_007109.3(TCF19):c.325C>T (p.Pro109Ser) single nucleotide variant not provided [RCV001695611] Chr6:31161533 [GRCh38]
Chr6:31129310 [GRCh37]
Chr6:6p21.33
benign
NM_007109.3(TCF19):c.631A>G (p.Met211Val) single nucleotide variant not provided [RCV001538318] Chr6:31161839 [GRCh38]
Chr6:31129616 [GRCh37]
Chr6:6p21.33
benign
NM_007109.3(TCF19):c.482G>A (p.Arg161Gln) single nucleotide variant Sensorineural hearing loss disorder [RCV001353213] Chr6:31161690 [GRCh38]
Chr6:31129467 [GRCh37]
Chr6:6p21.33
uncertain significance
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33
likely pathogenic
NC_000006.11:g.(?_30695893)_(36953949_?)dup duplication Proteasome-associated autoinflammatory syndrome 1 [RCV003113679] Chr6:30695893..36953949 [GRCh37]
Chr6:6p21.33-21.2
uncertain significance
NM_007109.3(TCF19):c.865G>A (p.Gly289Arg) single nucleotide variant not specified [RCV004140495] Chr6:31162544 [GRCh38]
Chr6:31130321 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.344C>T (p.Ser115Leu) single nucleotide variant not specified [RCV004238846] Chr6:31161552 [GRCh38]
Chr6:31129329 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.622C>T (p.Pro208Ser) single nucleotide variant not specified [RCV004158651] Chr6:31161830 [GRCh38]
Chr6:31129607 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.818G>A (p.Arg273Gln) single nucleotide variant not specified [RCV004148725] Chr6:31162497 [GRCh38]
Chr6:31130274 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.194G>A (p.Arg65Gln) single nucleotide variant not specified [RCV004116128] Chr6:31159663 [GRCh38]
Chr6:31127440 [GRCh37]
Chr6:6p21.33
likely benign
NM_007109.3(TCF19):c.128C>A (p.Ala43Asp) single nucleotide variant not specified [RCV004097494] Chr6:31159597 [GRCh38]
Chr6:31127374 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.841A>G (p.Met281Val) single nucleotide variant not specified [RCV004169934] Chr6:31162520 [GRCh38]
Chr6:31130297 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.754A>G (p.Arg252Gly) single nucleotide variant not specified [RCV004075196] Chr6:31161962 [GRCh38]
Chr6:31129739 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.278G>A (p.Arg93Lys) single nucleotide variant not specified [RCV004215649] Chr6:31161486 [GRCh38]
Chr6:31129263 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.308C>A (p.Thr103Asn) single nucleotide variant not specified [RCV004261896] Chr6:31161516 [GRCh38]
Chr6:31129293 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.583A>C (p.Ser195Arg) single nucleotide variant not specified [RCV004262206] Chr6:31161791 [GRCh38]
Chr6:31129568 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.943G>A (p.Val315Ile) single nucleotide variant not specified [RCV004252287] Chr6:31162622 [GRCh38]
Chr6:31130399 [GRCh37]
Chr6:6p21.33
likely benign
NM_007109.3(TCF19):c.433G>A (p.Val145Ile) single nucleotide variant not specified [RCV004354020] Chr6:31161641 [GRCh38]
Chr6:31129418 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.662G>A (p.Arg221His) single nucleotide variant not specified [RCV004466434] Chr6:31161870 [GRCh38]
Chr6:31129647 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.70C>G (p.Pro24Ala) single nucleotide variant not specified [RCV004466436] Chr6:31159539 [GRCh38]
Chr6:31127316 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.959C>T (p.Ala320Val) single nucleotide variant not specified [RCV004466437] Chr6:31162638 [GRCh38]
Chr6:31130415 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.280C>A (p.Leu94Met) single nucleotide variant not specified [RCV004466433] Chr6:31161488 [GRCh38]
Chr6:31129265 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.209G>T (p.Arg70Met) single nucleotide variant not specified [RCV004466432] Chr6:31159678 [GRCh38]
Chr6:31127455 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.196G>A (p.Gly66Ser) single nucleotide variant not specified [RCV004466431] Chr6:31159665 [GRCh38]
Chr6:31127442 [GRCh37]
Chr6:6p21.33
uncertain significance
NM_007109.3(TCF19):c.70C>A (p.Pro24Thr) single nucleotide variant not specified [RCV004466435] Chr6:31159539 [GRCh38]
Chr6:31127316 [GRCh37]
Chr6:6p21.33
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1825
Count of miRNA genes:724
Interacting mature miRNAs:821
Transcripts:ENST00000376255, ENST00000376257, ENST00000496421, ENST00000542218
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH36318  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,127,968 - 31,128,080UniSTSGRCh37
Build 36631,235,947 - 31,236,059RGDNCBI36
Celera632,728,194 - 32,728,306RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,930,390 - 30,930,502UniSTS
GeneMap99-GB4 RH Map6118.11UniSTS
G60011  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,130,694 - 31,130,846UniSTSGRCh37
Build 36631,238,673 - 31,238,825RGDNCBI36
Celera632,730,915 - 32,731,067RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,933,111 - 30,933,263UniSTS
TNG Radiation Hybrid Map616342.0UniSTS
STS-U25826  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,130,540 - 31,130,783UniSTSGRCh37
Build 36631,238,519 - 31,238,762RGDNCBI36
Celera632,730,761 - 32,731,004RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,932,957 - 30,933,200UniSTS
GeneMap99-GB4 RH Map6119.43UniSTS
NCBI RH Map6502.9UniSTS
RH68003  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,131,339 - 31,131,459UniSTSGRCh37
Build 36631,239,318 - 31,239,438RGDNCBI36
Celera632,731,560 - 32,731,680RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,933,756 - 30,933,876UniSTS
GeneMap99-GB4 RH Map6118.11UniSTS
NCBI RH Map6427.3UniSTS
SHGC-12693  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,132,126 - 31,132,376UniSTSGRCh37
Build 36631,240,105 - 31,240,355RGDNCBI36
Celera632,732,348 - 32,732,598RGD
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map6p21.3UniSTS
HuRef630,934,544 - 30,934,794UniSTS
RH46726  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,130,684 - 31,130,874UniSTSGRCh37
Build 36631,238,663 - 31,238,853RGDNCBI36
Celera632,730,905 - 32,731,095RGD
Cytogenetic Map6p21.3UniSTS
HuRef630,933,101 - 30,933,291UniSTS
GeneMap99-GB4 RH Map6118.66UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 625 437 157 126 1070 98 2068 139 775 201 740 522 42 232 1072 4
Low 1814 2531 1499 433 869 302 2285 2045 2922 218 720 1091 133 1 972 1712 2 2
Below cutoff 22 70 65 12 65 4 13 37 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB029516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB029517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB029518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB029519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB088113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB103619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB202105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL773544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BA000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC044632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP365938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX088580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR388229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR753819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR847794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA115077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA116232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA485961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA930848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB260358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ472773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC312698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT583882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S53374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U25826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000376255   ⟹   ENSP00000365431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,547 - 31,164,215 (+)Ensembl
RefSeq Acc Id: ENST00000376257   ⟹   ENSP00000365433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,589 - 31,164,215 (+)Ensembl
RefSeq Acc Id: ENST00000496421
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,161,484 - 31,163,007 (+)Ensembl
RefSeq Acc Id: ENST00000542218   ⟹   ENSP00000439397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,331 - 31,167,159 (+)Ensembl
RefSeq Acc Id: ENST00000706778   ⟹   ENSP00000516543
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,503 - 31,164,311 (+)Ensembl
RefSeq Acc Id: ENST00000706779   ⟹   ENSP00000516544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,504 - 31,164,311 (+)Ensembl
RefSeq Acc Id: ENST00000706780   ⟹   ENSP00000516545
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,523 - 31,164,311 (+)Ensembl
RefSeq Acc Id: ENST00000706781   ⟹   ENSP00000516546
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,526 - 31,164,311 (+)Ensembl
RefSeq Acc Id: ENST00000706782   ⟹   ENSP00000516547
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,530 - 31,164,211 (+)Ensembl
RefSeq Acc Id: ENST00000706783   ⟹   ENSP00000516548
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,530 - 31,164,311 (+)Ensembl
RefSeq Acc Id: ENST00000706784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,538 - 31,161,127 (+)Ensembl
RefSeq Acc Id: ENST00000706785   ⟹   ENSP00000516549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,538 - 31,164,187 (+)Ensembl
RefSeq Acc Id: ENST00000706786   ⟹   ENSP00000516550
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,538 - 31,164,311 (+)Ensembl
RefSeq Acc Id: ENST00000706787   ⟹   ENSP00000516551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,158,556 - 31,164,311 (+)Ensembl
RefSeq Acc Id: ENST00000706788
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl631,161,258 - 31,164,311 (+)Ensembl
RefSeq Acc Id: NM_001077511   ⟹   NP_001070979
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,158,589 - 31,164,215 (+)NCBI
GRCh37631,126,303 - 31,134,183 (+)NCBI
Build 36631,234,282 - 31,239,971 (+)NCBI Archive
Celera632,726,529 - 32,732,214 (+)RGD
HuRef630,928,725 - 30,934,410 (+)RGD
CHM1_1631,128,403 - 31,134,092 (+)NCBI
T2T-CHM13v2.0631,026,273 - 31,031,895 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318908   ⟹   NP_001305837
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,158,589 - 31,164,215 (+)NCBI
CHM1_1631,128,401 - 31,134,092 (+)NCBI
T2T-CHM13v2.0631,026,273 - 31,031,895 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007109   ⟹   NP_009040
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,158,589 - 31,164,215 (+)NCBI
GRCh37631,126,303 - 31,134,183 (+)NCBI
Build 36631,234,282 - 31,239,971 (+)NCBI Archive
Celera632,726,529 - 32,732,214 (+)RGD
HuRef630,928,725 - 30,934,410 (+)RGD
CHM1_1631,128,403 - 31,134,092 (+)NCBI
T2T-CHM13v2.0631,026,273 - 31,031,895 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047419273   ⟹   XP_047275229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,158,589 - 31,164,215 (+)NCBI
RefSeq Acc Id: XM_047419274   ⟹   XP_047275230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,158,589 - 31,164,215 (+)NCBI
RefSeq Acc Id: XM_054356274   ⟹   XP_054212249
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0631,026,273 - 31,029,908 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001070979 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305837 (Get FASTA)   NCBI Sequence Viewer  
  NP_009040 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275229 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275230 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186317 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186598 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186833 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187094 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187353 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212249 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB19475 (Get FASTA)   NCBI Sequence Viewer  
  AAB60363 (Get FASTA)   NCBI Sequence Viewer  
  AAH02493 (Get FASTA)   NCBI Sequence Viewer  
  AAH33086 (Get FASTA)   NCBI Sequence Viewer  
  AAH44632 (Get FASTA)   NCBI Sequence Viewer  
  AAP35911 (Get FASTA)   NCBI Sequence Viewer  
  ACZ95701 (Get FASTA)   NCBI Sequence Viewer  
  ACZ95709 (Get FASTA)   NCBI Sequence Viewer  
  AGG40969 (Get FASTA)   NCBI Sequence Viewer  
  AGG40973 (Get FASTA)   NCBI Sequence Viewer  
  AQY77143 (Get FASTA)   NCBI Sequence Viewer  
  AQY77144 (Get FASTA)   NCBI Sequence Viewer  
  AQY77145 (Get FASTA)   NCBI Sequence Viewer  
  AQY77146 (Get FASTA)   NCBI Sequence Viewer  
  AQY77147 (Get FASTA)   NCBI Sequence Viewer  
  BAA82324 (Get FASTA)   NCBI Sequence Viewer  
  BAA82325 (Get FASTA)   NCBI Sequence Viewer  
  BAA82326 (Get FASTA)   NCBI Sequence Viewer  
  BAA82327 (Get FASTA)   NCBI Sequence Viewer  
  BAB63312 (Get FASTA)   NCBI Sequence Viewer  
  BAC54945 (Get FASTA)   NCBI Sequence Viewer  
  BAE78629 (Get FASTA)   NCBI Sequence Viewer  
  BAF31280 (Get FASTA)   NCBI Sequence Viewer  
  EAX03363 (Get FASTA)   NCBI Sequence Viewer  
  EAX03364 (Get FASTA)   NCBI Sequence Viewer  
  EAX03365 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000365431
  ENSP00000365431.4
  ENSP00000365433
  ENSP00000365433.3
  ENSP00000373018.4
  ENSP00000383252.3
  ENSP00000393007.2
  ENSP00000393300.2
  ENSP00000393875.2
  ENSP00000397160.2
  ENSP00000399189.2
  ENSP00000399388.2
  ENSP00000401548.2
  ENSP00000414076.2
  ENSP00000414466.2
  ENSP00000414980.2
  ENSP00000439397.2
  ENSP00000516543
  ENSP00000516543.1
  ENSP00000516544
  ENSP00000516544.1
  ENSP00000516545.1
  ENSP00000516546.1
  ENSP00000516547.1
  ENSP00000516548.1
  ENSP00000516549.1
  ENSP00000516550.1
  ENSP00000516551.1
GenBank Protein Q9Y242 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_009040   ⟸   NM_007109
- UniProtKB: Q9BUM2 (UniProtKB/Swiss-Prot),   Q5STF5 (UniProtKB/Swiss-Prot),   Q5STD6 (UniProtKB/Swiss-Prot),   Q5SQ89 (UniProtKB/Swiss-Prot),   Q15967 (UniProtKB/Swiss-Prot),   Q13176 (UniProtKB/Swiss-Prot),   Q0EFA8 (UniProtKB/Swiss-Prot),   B0UY11 (UniProtKB/Swiss-Prot),   A6NCT8 (UniProtKB/Swiss-Prot),   Q9UBH7 (UniProtKB/Swiss-Prot),   Q9Y242 (UniProtKB/Swiss-Prot),   A0A1U9X8M7 (UniProtKB/TrEMBL),   A0A0G2JH60 (UniProtKB/TrEMBL),   D2IYK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001070979   ⟸   NM_001077511
- UniProtKB: Q9BUM2 (UniProtKB/Swiss-Prot),   Q5STF5 (UniProtKB/Swiss-Prot),   Q5STD6 (UniProtKB/Swiss-Prot),   Q5SQ89 (UniProtKB/Swiss-Prot),   Q15967 (UniProtKB/Swiss-Prot),   Q13176 (UniProtKB/Swiss-Prot),   Q0EFA8 (UniProtKB/Swiss-Prot),   B0UY11 (UniProtKB/Swiss-Prot),   A6NCT8 (UniProtKB/Swiss-Prot),   Q9UBH7 (UniProtKB/Swiss-Prot),   Q9Y242 (UniProtKB/Swiss-Prot),   A0A1U9X8M7 (UniProtKB/TrEMBL),   A0A0G2JH60 (UniProtKB/TrEMBL),   D2IYK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001305837   ⟸   NM_001318908
- UniProtKB: Q9BUM2 (UniProtKB/Swiss-Prot),   Q5STF5 (UniProtKB/Swiss-Prot),   Q5STD6 (UniProtKB/Swiss-Prot),   Q5SQ89 (UniProtKB/Swiss-Prot),   Q15967 (UniProtKB/Swiss-Prot),   Q13176 (UniProtKB/Swiss-Prot),   Q0EFA8 (UniProtKB/Swiss-Prot),   B0UY11 (UniProtKB/Swiss-Prot),   A6NCT8 (UniProtKB/Swiss-Prot),   Q9UBH7 (UniProtKB/Swiss-Prot),   Q9Y242 (UniProtKB/Swiss-Prot),   A0A1U9X8M7 (UniProtKB/TrEMBL),   A0A0G2JH60 (UniProtKB/TrEMBL),   D2IYK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000439397   ⟸   ENST00000542218
RefSeq Acc Id: ENSP00000365431   ⟸   ENST00000376255
RefSeq Acc Id: ENSP00000365433   ⟸   ENST00000376257
RefSeq Acc Id: XP_047275229   ⟸   XM_047419273
- Peptide Label: isoform X1
- UniProtKB: Q9Y242 (UniProtKB/Swiss-Prot),   Q9BUM2 (UniProtKB/Swiss-Prot),   Q5STF5 (UniProtKB/Swiss-Prot),   Q5STD6 (UniProtKB/Swiss-Prot),   Q5SQ89 (UniProtKB/Swiss-Prot),   Q15967 (UniProtKB/Swiss-Prot),   Q13176 (UniProtKB/Swiss-Prot),   Q0EFA8 (UniProtKB/Swiss-Prot),   B0UY11 (UniProtKB/Swiss-Prot),   A6NCT8 (UniProtKB/Swiss-Prot),   Q9UBH7 (UniProtKB/Swiss-Prot),   A0A1U9X8M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_047275230   ⟸   XM_047419274
- Peptide Label: isoform X1
- UniProtKB: Q9Y242 (UniProtKB/Swiss-Prot),   Q9BUM2 (UniProtKB/Swiss-Prot),   Q5STF5 (UniProtKB/Swiss-Prot),   Q5STD6 (UniProtKB/Swiss-Prot),   Q5SQ89 (UniProtKB/Swiss-Prot),   Q15967 (UniProtKB/Swiss-Prot),   Q13176 (UniProtKB/Swiss-Prot),   Q0EFA8 (UniProtKB/Swiss-Prot),   B0UY11 (UniProtKB/Swiss-Prot),   A6NCT8 (UniProtKB/Swiss-Prot),   Q9UBH7 (UniProtKB/Swiss-Prot),   A0A1U9X8M7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSP00000516548   ⟸   ENST00000706783
RefSeq Acc Id: ENSP00000516543   ⟸   ENST00000706778
RefSeq Acc Id: ENSP00000516546   ⟸   ENST00000706781
RefSeq Acc Id: ENSP00000516550   ⟸   ENST00000706786
RefSeq Acc Id: ENSP00000516545   ⟸   ENST00000706780
RefSeq Acc Id: ENSP00000516551   ⟸   ENST00000706787
RefSeq Acc Id: ENSP00000516549   ⟸   ENST00000706785
RefSeq Acc Id: ENSP00000516544   ⟸   ENST00000706779
RefSeq Acc Id: ENSP00000516547   ⟸   ENST00000706782
RefSeq Acc Id: XP_054212249   ⟸   XM_054356274
- Peptide Label: isoform X7
Protein Domains
FHA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y242-F1-model_v2 AlphaFold Q9Y242 1-345 view protein structure

Promoters
RGD ID:6872466
Promoter ID:EPDNEW_H9398
Type:initiation region
Name:TCF19_1
Description:transcription factor 19
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,158,589 - 31,158,649EPDNEW
RGD ID:6804850
Promoter ID:HG_KWN:52896
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000396263,   NM_001077511,   NM_001105563,   NM_001105564,   NM_007109,   NM_019052,   OTTHUMT00000076185,   OTTHUMT00000076186,   OTTHUMT00000257973,   OTTHUMT00000257974,   OTTHUMT00000257975,   OTTHUMT00000257976,   OTTHUMT00000257977,   OTTHUMT00000257978,   OTTHUMT00000257981,   UC010JSK.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,233,856 - 31,234,467 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11629 AgrOrtholog
COSMIC TCF19 COSMIC
Ensembl Genes ENSG00000137310 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000206455 UniProtKB/TrEMBL
  ENSG00000224379 UniProtKB/TrEMBL
  ENSG00000224472 UniProtKB/TrEMBL
  ENSG00000224941 UniProtKB/TrEMBL
  ENSG00000233890 UniProtKB/TrEMBL
  ENSG00000234674 UniProtKB/TrEMBL
Ensembl Transcript ENST00000376255 ENTREZGENE
  ENST00000376255.4 UniProtKB/Swiss-Prot
  ENST00000376257 ENTREZGENE
  ENST00000376257.8 UniProtKB/Swiss-Prot
  ENST00000383526.4 UniProtKB/TrEMBL
  ENST00000400401.7 UniProtKB/TrEMBL
  ENST00000416433.2 UniProtKB/TrEMBL
  ENST00000428957.2 UniProtKB/TrEMBL
  ENST00000430947.6 UniProtKB/TrEMBL
  ENST00000439112.6 UniProtKB/TrEMBL
  ENST00000441405.6 UniProtKB/TrEMBL
  ENST00000442190.6 UniProtKB/TrEMBL
  ENST00000446038.6 UniProtKB/TrEMBL
  ENST00000446042.2 UniProtKB/TrEMBL
  ENST00000449558.2 UniProtKB/TrEMBL
  ENST00000453201.2 UniProtKB/TrEMBL
  ENST00000542218.2 UniProtKB/TrEMBL
  ENST00000706778 ENTREZGENE
  ENST00000706778.1 UniProtKB/Swiss-Prot
  ENST00000706779 ENTREZGENE
  ENST00000706779.1 UniProtKB/Swiss-Prot
  ENST00000706780.1 UniProtKB/Swiss-Prot
  ENST00000706781.1 UniProtKB/Swiss-Prot
  ENST00000706782.1 UniProtKB/TrEMBL
  ENST00000706783.1 UniProtKB/TrEMBL
  ENST00000706785.1 UniProtKB/TrEMBL
  ENST00000706786.1 UniProtKB/TrEMBL
  ENST00000706787.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.200.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000137310 GTEx
  ENSG00000206455 GTEx
  ENSG00000224379 GTEx
  ENSG00000224472 GTEx
  ENSG00000224941 GTEx
  ENSG00000233890 GTEx
  ENSG00000234674 GTEx
HGNC ID HGNC:11629 ENTREZGENE
Human Proteome Map TCF19 Human Proteome Map
InterPro FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCF19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TCF19_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6941 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 6941 ENTREZGENE
OMIM 600912 OMIM
PANTHER PTHR15464 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA36384 PharmGKB
PROSITE FHA_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JH60 ENTREZGENE
  A0A0G2JIJ7_HUMAN UniProtKB/TrEMBL
  A0A1U9X8M7 ENTREZGENE, UniProtKB/TrEMBL
  A0A9L9PXI0_HUMAN UniProtKB/TrEMBL
  A0A9L9PXV2_HUMAN UniProtKB/TrEMBL
  A0A9L9PXX5_HUMAN UniProtKB/TrEMBL
  A6NCT8 ENTREZGENE
  B0UY11 ENTREZGENE
  D2IYK5 ENTREZGENE, UniProtKB/TrEMBL
  H0YFN0_HUMAN UniProtKB/TrEMBL
  Q0EFA8 ENTREZGENE
  Q13176 ENTREZGENE
  Q15967 ENTREZGENE
  Q5SQ89 ENTREZGENE
  Q5STD6 ENTREZGENE
  Q5STF5 ENTREZGENE
  Q9BUM2 ENTREZGENE
  Q9UBH7 ENTREZGENE
  Q9Y242 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A0A0G2JH60 UniProtKB/TrEMBL
  A6NCT8 UniProtKB/Swiss-Prot
  B0UY11 UniProtKB/Swiss-Prot
  Q0EFA8 UniProtKB/Swiss-Prot
  Q13176 UniProtKB/Swiss-Prot
  Q15967 UniProtKB/Swiss-Prot
  Q5SQ89 UniProtKB/Swiss-Prot
  Q5STD6 UniProtKB/Swiss-Prot
  Q5STF5 UniProtKB/Swiss-Prot
  Q9BUM2 UniProtKB/Swiss-Prot
  Q9UBH7 UniProtKB/Swiss-Prot