TCF19 (transcription factor 19) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TCF19 (transcription factor 19) Pan paniscus
Analyze
Symbol: TCF19
Name: transcription factor 19
RGD ID: 11816461
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); regulation of gene expression (ortholog); type B pancreatic cell proliferation (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); hepatocellular carcinoma (ortholog); megacolon (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,720,267 - 45,725,700 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,684,681 - 41,688,874 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,904,470 - 30,909,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,769,855 - 31,775,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,769,893 - 31,775,236 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TCF19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,720,267 - 45,725,700 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,684,681 - 41,688,874 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0630,904,470 - 30,909,912 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,769,855 - 31,775,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,769,893 - 31,775,236 (+)Ensemblpanpan1.1panPan2
TCF19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,158,589 - 31,164,215 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,158,331 - 31,167,159 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,126,366 - 31,131,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,234,282 - 31,239,971 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,235,225 - 31,238,517NCBI
Celera632,726,529 - 32,732,214 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef630,928,725 - 30,934,410 (+)NCBIHuRef
CHM1_1631,128,403 - 31,134,092 (+)NCBICHM1_1
T2T-CHM13v2.0631,026,273 - 31,031,895 (+)NCBIT2T-CHM13v2.0
Tcf19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,823,627 - 35,827,730 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,823,631 - 35,827,721 (-)EnsemblGRCm39 Ensembl
GRCm381735,512,730 - 35,516,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,512,734 - 35,516,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv371735,649,680 - 35,653,769 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361735,120,787 - 35,124,807 (-)NCBIMGSCv36mm8
Celera1739,027,683 - 39,031,767 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.69NCBI
Tcf19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,223,464 - 3,227,569 (+)NCBIGRCr8
mRatBN7.2203,218,756 - 3,222,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,218,693 - 3,223,271 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx203,280,083 - 3,284,200 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,285,054 - 3,289,173 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0203,309,260 - 3,313,380 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0203,740,454 - 3,746,964 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl203,744,395 - 3,746,964 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0205,831,137 - 5,833,706 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera20645,956 - 650,058 (+)NCBICelera
Cytogenetic Map20p12NCBI
Tcf19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955583989,388 - 994,908 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955583989,388 - 994,180 (+)NCBIChiLan1.0ChiLan1.0
TCF19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112855,321 - 859,109 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl12854,611 - 858,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12992,755 - 996,522 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01293,320 - 97,092 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1293,336 - 97,059 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112858,936 - 862,700 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.012927,196 - 930,963 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.012994,786 - 998,552 (+)NCBIUU_Cfam_GSD_1.0
Tcf19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494634,456,593 - 34,460,560 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936837821,861 - 826,088 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936837821,884 - 825,766 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,558,384 - 23,562,069 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,558,326 - 23,562,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,271,544 - 27,275,261 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11741,310,999 - 41,319,268 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1741,311,005 - 41,319,042 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604430,848,956 - 30,854,387 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,765,742 - 24,770,135 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,766,212 - 24,770,136 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000036039   ⟹   ENSPPAP00000013369
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,769,893 - 31,775,236 (+)Ensembl
RefSeq Acc Id: XM_063604782   ⟹   XP_063460852
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,720,267 - 45,725,700 (+)NCBI
RefSeq Acc Id: XM_063604783   ⟹   XP_063460853
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,720,267 - 45,725,700 (+)NCBI
RefSeq Acc Id: XM_063604784   ⟹   XP_063460854
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,720,267 - 45,725,700 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063460852 (Get FASTA)   NCBI Sequence Viewer  
  XP_063460853 (Get FASTA)   NCBI Sequence Viewer  
  XP_063460854 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013369.1
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000013369   ⟸   ENSPPAT00000036039
RefSeq Acc Id: XP_063460853   ⟸   XM_063604783
- UniProtKB: A0A2R9A7X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063460854   ⟸   XM_063604784
- UniProtKB: A0A2R9A7X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063460852   ⟸   XM_063604782
- UniProtKB: A0A2R9A7X8 (UniProtKB/TrEMBL)
Protein Domains
FHA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029863 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036039.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
  TCF19 UniProtKB/TrEMBL
  TCF19_PHD UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report pps:100995104 UniProtKB/TrEMBL
NCBI Gene TCF19 ENTREZGENE
PANTHER PTHR15464 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 19 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
SMART FHA UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF57903 UniProtKB/TrEMBL
UniProt A0A2R9A7X8 ENTREZGENE, UniProtKB/TrEMBL