Slain2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 73,071,705 - 73,136,184 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 73,071,647 - 73,136,172 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 72,914,362 - 72,978,841 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 72,914,304 - 72,978,829 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 73,305,556 - 73,370,067 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 73,227,698 - 73,257,960 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 70,166,358 - 70,231,895 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | C3.2 | NCBI | | | | | cM Map | 5 | 38.44 | NCBI | | | | |
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SLAIN2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 4 | 48,341,529 - 48,426,201 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 48,341,529 - 48,426,201 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 48,343,546 - 48,428,218 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 48,038,370 - 48,122,972 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 4 | 48,792,323 - 48,877,038 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | p11 | NCBI | | | | | HuRef | 4 | 47,663,993 - 47,748,480 (+) | NCBI | | HuRef | | | CHM1_1 | 4 | 48,342,753 - 48,427,384 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 48,308,531 - 48,393,241 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Slain2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 14 | 35,590,050 - 35,667,734 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 35,236,034 - 35,314,186 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 35,236,041 - 35,304,678 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 14 | 35,600,041 - 35,669,002 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 36,904,799 - 36,973,765 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 35,393,130 - 35,462,108 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 37,802,347 - 37,880,571 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 37,802,365 - 37,871,051 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 37,612,566 - 37,690,486 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 14 | 37,639,681 - 37,708,306 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 14 | 37,642,112 - 37,710,742 (-) | NCBI | | | | | Celera | 14 | 34,490,942 - 34,559,588 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | p11 | NCBI | | | | |
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Slain2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955443 | 131,696 - 231,866 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955443 | 134,631 - 231,866 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SLAIN2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 79,439,597 - 79,517,758 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 79,696,717 - 79,779,248 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 73,728,092 - 73,806,305 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 84,455,174 - 84,538,638 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 84,458,132 - 84,532,559 (-) | Ensembl | panpan1.1 | | panPan2 | |
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SLAIN2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 13 | 44,172,232 - 44,249,088 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 13 | 44,172,232 - 44,246,650 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 13 | 44,124,594 - 44,201,588 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 13 | 44,773,096 - 44,852,416 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 13 | 44,772,933 - 44,851,978 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 13 | 44,449,333 - 44,526,331 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 13 | 43,982,227 - 44,061,705 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 13 | 44,864,748 - 44,941,779 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Slain2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405285 | 31,842,611 - 31,901,605 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936482 | 14,396,630 - 14,455,636 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936482 | 14,396,635 - 14,455,204 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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SLAIN2 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
Sscrofa11.1 Ensembl | 8 | 38,241,598 - 38,322,031 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 38,241,497 - 38,320,663 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 40,289,036 - 40,365,756 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SLAIN2 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 27 | 1,831,126 - 1,910,851 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 27 | 1,829,963 - 1,910,447 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666047 | 47,834,546 - 47,912,473 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Slain2 (Heterocephalus glaber - naked mole-rat) |
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