C11orf24 (chromosome 11 open reading frame 24) - Rat Genome Database

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Gene: C11orf24 (chromosome 11 open reading frame 24) Homo sapiens
Analyze
Symbol: C11orf24
Name: chromosome 11 open reading frame 24
RGD ID: 1323665
HGNC Page HGNC:1174
Description: Located in Golgi apparatus and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DM4E3; hypothetical protein LOC53838; uncharacterized protein C11orf24
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,261,338 - 68,271,973 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,261,338 - 68,272,001 (-)EnsemblGRCh38hg38GRCh38
GRCh371168,028,806 - 68,039,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,785,383 - 67,795,997 (-)NCBINCBI36Build 36hg18NCBI36
Build 341167,785,382 - 67,795,997NCBI
Celera1165,362,696 - 65,374,268 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,363,931 - 64,374,972 (-)NCBIHuRef
CHM1_11167,913,089 - 67,923,960 (-)NCBICHM1_1
T2T-CHM13v2.01168,264,928 - 68,276,330 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11401438   PMID:12477932   PMID:12975309   PMID:15489334   PMID:15498874   PMID:21873635   PMID:24312644   PMID:24623722   PMID:28514442   PMID:28986522   PMID:29676528   PMID:32296183  
PMID:33845483   PMID:33961781  


Genomics

Comparative Map Data
C11orf24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,261,338 - 68,271,973 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,261,338 - 68,272,001 (-)EnsemblGRCh38hg38GRCh38
GRCh371168,028,806 - 68,039,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,785,383 - 67,795,997 (-)NCBINCBI36Build 36hg18NCBI36
Build 341167,785,382 - 67,795,997NCBI
Celera1165,362,696 - 65,374,268 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,363,931 - 64,374,972 (-)NCBIHuRef
CHM1_11167,913,089 - 67,923,960 (-)NCBICHM1_1
T2T-CHM13v2.01168,264,928 - 68,276,330 (-)NCBIT2T-CHM13v2.0
1810055G02Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,758,343 - 3,767,882 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,758,293 - 3,767,881 (+)EnsemblGRCm39 Ensembl
GRCm38193,708,293 - 3,717,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,708,293 - 3,717,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,708,333 - 3,717,881 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,708,333 - 3,717,881 (+)NCBIMGSCv36mm8
Celera193,587,492 - 3,597,040 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.44NCBI
C1h11orf24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,374,426 - 210,383,191 (+)NCBIGRCr8
mRatBN7.21200,945,188 - 200,953,953 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,945,180 - 200,962,585 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,318,602 - 209,327,307 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,407,198 - 216,415,907 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,081,400 - 209,090,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,945,565 - 218,954,274 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,945,508 - 218,954,280 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,819,324 - 225,828,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,234,532 - 206,243,241 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,387,984 - 206,396,694 (+)NCBI
Celera1198,498,549 - 198,507,258 (+)NCBICelera
Cytogenetic Map1q43NCBI
CUNH11orf24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,567,268 - 17,574,503 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,563,188 - 17,573,079 (+)NCBIChiLan1.0ChiLan1.0
C9H11orf24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2969,213,031 - 69,224,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,256,206 - 70,267,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01163,343,911 - 63,355,102 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,651,896 - 66,662,867 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,651,896 - 66,662,867 (-)Ensemblpanpan1.1panPan2
C18H11orf24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,580,495 - 49,590,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,584,563 - 49,591,683 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,189,877 - 48,200,335 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,497,289 - 50,507,747 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11849,715,428 - 49,725,884 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,290,399 - 49,300,855 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,083,461 - 50,093,920 (+)NCBIUU_Cfam_GSD_1.0
CUNH11orf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,426,677 - 5,436,662 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365991,869,034 - 1,879,011 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H11orf24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.124,682,204 - 4,692,016 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,247,155 - 3,256,954 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH11orf24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,261,118 - 6,272,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038103,545,921 - 103,558,214 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH11orf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,605,295 - 18,611,087 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,601,635 - 18,610,913 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C11orf24
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q13.2(chr11:67446153-68679073)x1 copy number loss See cases [RCV000052683] Chr11:67446153..68679073 [GRCh38]
Chr11:67213624..68446541 [GRCh37]
Chr11:66970200..68203117 [NCBI36]
Chr11:11q13.2		 pathogenic
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3		 pathogenic
GRCh38/hg38 11q13.2-13.3(chr11:67217264-69448598)x1 copy number loss See cases [RCV000135609] Chr11:67217264..69448598 [GRCh38]
Chr11:66984735..69263366 [GRCh37]
Chr11:66741311..68972547 [NCBI36]
Chr11:11q13.2-13.3		 likely pathogenic
GRCh38/hg38 11q13.2-13.3(chr11:68205963-69580475)x3 copy number gain See cases [RCV000137992] Chr11:68205963..69580475 [GRCh38]
Chr11:67973430..69395243 [GRCh37]
Chr11:67730006..69104424 [NCBI36]
Chr11:11q13.2-13.3		 likely benign
GRCh38/hg38 11q13.2-13.4(chr11:68031693-71593495)x1 copy number loss See cases [RCV000142138] Chr11:68031693..71593495 [GRCh38]
Chr11:67799160..71304541 [GRCh37]
Chr11:67555736..70982189 [NCBI36]
Chr11:11q13.2-13.4		 likely pathogenic
GRCh37/hg19 11q13.2-13.4(chr11:67799160-70701268)x1 copy number loss See cases [RCV000510219] Chr11:67799160..70701268 [GRCh37]
Chr11:11q13.2-13.4		 likely pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470) copy number gain See cases [RCV000511729] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3 copy number gain See cases [RCV000510881] Chr11:230616..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3 copy number gain not provided [RCV000737348] Chr11:198510..134934063 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3 copy number gain not provided [RCV000749874] Chr11:70864..134938470 [GRCh37]
Chr11:11p15.5-q25		 pathogenic
GRCh37/hg19 11q13.2-13.3(chr11:67826766-68440477)x3 copy number gain not provided [RCV000846333] Chr11:67826766..68440477 [GRCh37]
Chr11:11q13.2-13.3		 uncertain significance
NC_000011.9:g.(?_64973914)_(70052579_?)dup duplication Aicardi-Goutieres syndrome 3 [RCV003113322]|FADD-related immunodeficiency [RCV003107753] Chr11:64973914..70052579 [GRCh37]
Chr11:11q13.1-13.3		 uncertain significance
NC_000011.9:g.(?_67759017)_(68216538_?)dup duplication not provided [RCV003107647] Chr11:67759017..68216538 [GRCh37]
Chr11:11q13.2		 uncertain significance
NC_000011.9:g.(?_59596957)_(68707199_?)dup duplication Familial temporal lobe epilepsy 8 [RCV001372442] Chr11:59596957..68707199 [GRCh37]
Chr11:11q12.1-13.3		 uncertain significance
GRCh37/hg19 11p13-q25(chr11:32799481-134938470)x3 copy number gain MISSED ABORTION [RCV002282973] Chr11:32799481..134938470 [GRCh37]
Chr11:11p13-q25		 pathogenic
NM_022338.4(C11orf24):c.526C>T (p.Arg176Trp) single nucleotide variant Inborn genetic diseases [RCV002683828] Chr11:68262469 [GRCh38]
Chr11:68029937 [GRCh37]
Chr11:11q13.2		 likely benign
NM_022338.4(C11orf24):c.964C>G (p.Pro322Ala) single nucleotide variant Inborn genetic diseases [RCV002972890] Chr11:68262031 [GRCh38]
Chr11:68029499 [GRCh37]
Chr11:11q13.2		 uncertain significance
NM_022338.4(C11orf24):c.527G>A (p.Arg176Gln) single nucleotide variant Inborn genetic diseases [RCV002757412] Chr11:68262468 [GRCh38]
Chr11:68029936 [GRCh37]
Chr11:11q13.2		 likely benign
GRCh37/hg19 11q12.2-13.5(chr11:59923608-76272324)x3 copy number gain not provided [RCV003484842] Chr11:59923608..76272324 [GRCh37]
Chr11:11q12.2-13.5		 pathogenic
GRCh37/hg19 11q13.2(chr11:67799161-68393180)x1 copy number loss not provided [RCV003483126] Chr11:67799161..68393180 [GRCh37]
Chr11:11q13.2		 pathogenic
NM_022338.4(C11orf24):c.366G>A (p.Ala122=) single nucleotide variant not provided [RCV003409322] Chr11:68262629 [GRCh38]
Chr11:68030097 [GRCh37]
Chr11:11q13.2		 likely benign
GRCh37/hg19 11q12.1-13.3(chr11:56895955-69295402)x3 copy number gain not specified [RCV003986944] Chr11:56895955..69295402 [GRCh37]
Chr11:11q12.1-13.3		 likely pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2474
Count of miRNA genes:886
Interacting mature miRNAs:1070
Transcripts:ENST00000304271, ENST00000527280, ENST00000529339, ENST00000529590, ENST00000530166, ENST00000531745, ENST00000532534, ENST00000532969, ENST00000533310
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
SHGC-86344  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371168,030,839 - 68,031,168UniSTSGRCh37
Build 361167,787,415 - 67,787,744RGDNCBI36
Celera1165,364,732 - 65,365,061RGD
Cytogenetic Map11q13UniSTS
HuRef1164,365,967 - 64,366,296UniSTS
TNG Radiation Hybrid Map1130138.0UniSTS
RH45838  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371168,028,899 - 68,029,063UniSTSGRCh37
Build 361167,785,475 - 67,785,639RGDNCBI36
Celera1165,362,792 - 65,362,956RGD
Cytogenetic Map11q13UniSTS
HuRef1164,364,027 - 64,364,191UniSTS
GeneMap99-GB4 RH Map11259.82UniSTS
SGC38070  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371168,029,044 - 68,029,317UniSTSGRCh37
Build 361167,785,620 - 67,785,893RGDNCBI36
Celera1165,362,937 - 65,363,210RGD
Cytogenetic Map11q13UniSTS
HuRef1164,364,172 - 64,364,445UniSTS
GeneMap99-GB4 RH Map11259.72UniSTS
Whitehead-RH Map11362.4UniSTS
RH17410  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371168,036,696 - 68,036,840UniSTSGRCh37
Build 361167,793,272 - 67,793,416RGDNCBI36
Celera1165,371,495 - 65,371,639RGD
Cytogenetic Map11q13UniSTS
HuRef1164,372,198 - 64,372,342UniSTS
GeneMap99-GB4 RH Map11262.04UniSTS
NCBI RH Map11589.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2425 2006 1686 617 1208 464 3487 1232 2217 339 1452 1605 169 1 1192 1994 5 2
Low 14 984 40 7 742 1 870 965 1517 80 8 8 6 12 794 1
Below cutoff 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001300913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005274053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011545103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047427129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054369138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF264781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF370372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP002813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP002992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG701401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI862360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX384793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB471655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000304271   ⟹   ENSP00000307264
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,261,338 - 68,271,973 (-)Ensembl
RefSeq Acc Id: ENST00000527280   ⟹   ENSP00000436765
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,263,692 - 68,271,989 (-)Ensembl
RefSeq Acc Id: ENST00000529339
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,267,740 - 68,271,947 (-)Ensembl
RefSeq Acc Id: ENST00000529590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,267,101 - 68,271,971 (-)Ensembl
RefSeq Acc Id: ENST00000530166
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,262,463 - 68,272,001 (-)Ensembl
RefSeq Acc Id: ENST00000531745
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,261,463 - 68,263,355 (-)Ensembl
RefSeq Acc Id: ENST00000532534
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,267,180 - 68,271,916 (-)Ensembl
RefSeq Acc Id: ENST00000532969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,267,461 - 68,271,918 (-)Ensembl
RefSeq Acc Id: ENST00000533310   ⟹   ENSP00000434144
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1168,261,609 - 68,271,947 (-)Ensembl
RefSeq Acc Id: NM_001300913   ⟹   NP_001287842
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381168,261,338 - 68,271,973 (-)NCBI
CHM1_11167,913,089 - 67,923,960 (-)NCBI
T2T-CHM13v2.01168,264,928 - 68,276,299 (-)NCBI
Sequence:
RefSeq Acc Id: NM_022338   ⟹   NP_071733
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381168,261,338 - 68,271,973 (-)NCBI
GRCh371168,028,803 - 68,039,469 (-)RGD
GRCh371168,028,803 - 68,039,469 (-)NCBI
Build 361167,785,383 - 67,795,997 (-)NCBI Archive
Celera1165,362,696 - 65,374,268 (-)RGD
HuRef1164,363,931 - 64,374,972 (-)ENTREZGENE
CHM1_11167,913,089 - 67,923,960 (-)NCBI
T2T-CHM13v2.01168,264,928 - 68,276,299 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005274053   ⟹   XP_005274110
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381168,261,338 - 68,271,973 (-)NCBI
GRCh371168,028,803 - 68,039,469 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011545103   ⟹   XP_011543405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381168,261,338 - 68,263,683 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047427129   ⟹   XP_047283085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381168,261,338 - 68,271,973 (-)NCBI
RefSeq Acc Id: XM_054369136   ⟹   XP_054225111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01168,264,928 - 68,276,330 (-)NCBI
RefSeq Acc Id: XM_054369137   ⟹   XP_054225112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01168,264,928 - 68,267,273 (-)NCBI
RefSeq Acc Id: XM_054369138   ⟹   XP_054225113
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01168,264,928 - 68,276,317 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_071733   ⟸   NM_022338
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9H2K4 (UniProtKB/Swiss-Prot),   Q96F05 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005274110   ⟸   XM_005274053
- Peptide Label: isoform X1
- UniProtKB: Q9H2K4 (UniProtKB/Swiss-Prot),   Q96F05 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001287842   ⟸   NM_001300913
- Peptide Label: isoform 2 precursor
- UniProtKB: E9PRU5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011543405   ⟸   XM_011545103
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSP00000434144   ⟸   ENST00000533310
RefSeq Acc Id: ENSP00000436765   ⟸   ENST00000527280
RefSeq Acc Id: ENSP00000307264   ⟸   ENST00000304271
RefSeq Acc Id: XP_047283085   ⟸   XM_047427129
- Peptide Label: isoform X3
- UniProtKB: E9PRU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054225111   ⟸   XM_054369136
- Peptide Label: isoform X1
- UniProtKB: Q96F05 (UniProtKB/Swiss-Prot),   Q9H2K4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054225113   ⟸   XM_054369138
- Peptide Label: isoform X3
- UniProtKB: E9PRU5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054225112   ⟸   XM_054369137
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96F05-F1-model_v2 AlphaFold Q96F05 1-449 view protein structure

Promoters
RGD ID:6788537
Promoter ID:HG_KWN:13516
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_022338
Position:
Human AssemblyChrPosition (strand)Source
Build 361167,795,954 - 67,796,454 (-)MPROMDB
RGD ID:7221321
Promoter ID:EPDNEW_H16406
Type:initiation region
Name:C11orf24_1
Description:chromosome 11 open reading frame 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381168,271,973 - 68,272,033EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1174 AgrOrtholog
COSMIC C11orf24 COSMIC
Ensembl Genes ENSG00000171067 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000304271 ENTREZGENE
  ENST00000304271.11 UniProtKB/Swiss-Prot
  ENST00000527280.1 UniProtKB/TrEMBL
  ENST00000533310 ENTREZGENE
  ENST00000533310.5 UniProtKB/TrEMBL
GTEx ENSG00000171067 GTEx
HGNC ID HGNC:1174 ENTREZGENE
Human Proteome Map C11orf24 Human Proteome Map
InterPro DUF5585 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:53838 UniProtKB/Swiss-Prot
NCBI Gene 53838 ENTREZGENE
OMIM 610880 OMIM
PANTHER CHROMOSOME 11 OPEN READING FRAME 24 UniProtKB/Swiss-Prot
  MANSC DOMAIN CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
Pfam DUF5585 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA25488 PharmGKB
UniProt CK024_HUMAN UniProtKB/Swiss-Prot
  E9PI63_HUMAN UniProtKB/TrEMBL
  E9PRU5 ENTREZGENE, UniProtKB/TrEMBL
  Q96F05 ENTREZGENE
  Q9H2K4 ENTREZGENE
UniProt Secondary Q9H2K4 UniProtKB/Swiss-Prot