CUNH11orf24 (chromosome unknown C11orf24 homolog) - Rat Genome Database

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Gene: CUNH11orf24 (chromosome unknown C11orf24 homolog) Ictidomys tridecemlineatus
Analyze
Symbol: CUNH11orf24
Name: chromosome unknown C11orf24 homolog
RGD ID: 12611130
Description: ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown open reading frame, human C11orf24; LOC101972406; uncharacterized protein C11orf24 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,426,677 - 5,436,662 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365991,869,034 - 1,879,011 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CUNH11orf24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,426,677 - 5,436,662 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365991,869,034 - 1,879,011 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C11orf24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,261,338 - 68,271,973 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,261,338 - 68,272,001 (-)EnsemblGRCh38hg38GRCh38
GRCh371168,028,806 - 68,039,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,785,383 - 67,795,997 (-)NCBINCBI36Build 36hg18NCBI36
Build 341167,785,382 - 67,795,997NCBI
Celera1165,362,696 - 65,374,268 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,363,931 - 64,374,972 (-)NCBIHuRef
CHM1_11167,913,089 - 67,923,960 (-)NCBICHM1_1
T2T-CHM13v2.01168,264,928 - 68,276,330 (-)NCBIT2T-CHM13v2.0
1810055G02Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,758,343 - 3,767,882 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,758,293 - 3,767,881 (+)EnsemblGRCm39 Ensembl
GRCm38193,708,293 - 3,717,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,708,293 - 3,717,881 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,708,333 - 3,717,881 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,708,333 - 3,717,881 (+)NCBIMGSCv36mm8
Celera193,587,492 - 3,597,040 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.44NCBI
C1h11orf24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,374,426 - 210,383,191 (+)NCBIGRCr8
mRatBN7.21200,945,188 - 200,953,953 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,945,180 - 200,962,585 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1209,318,602 - 209,327,307 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,407,198 - 216,415,907 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01209,081,400 - 209,090,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,945,565 - 218,954,274 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,945,508 - 218,954,280 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01225,819,324 - 225,828,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,234,532 - 206,243,241 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11206,387,984 - 206,396,694 (+)NCBI
Celera1198,498,549 - 198,507,258 (+)NCBICelera
Cytogenetic Map1q43NCBI
CUNH11orf24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,567,268 - 17,574,503 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542217,563,188 - 17,573,079 (+)NCBIChiLan1.0ChiLan1.0
C9H11orf24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2969,213,031 - 69,224,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,256,206 - 70,267,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01163,343,911 - 63,355,102 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,651,896 - 66,662,867 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,651,896 - 66,662,867 (-)Ensemblpanpan1.1panPan2
C18H11orf24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,580,495 - 49,590,962 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,584,563 - 49,591,683 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1848,189,877 - 48,200,335 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01850,497,289 - 50,507,747 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11849,715,428 - 49,725,884 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01849,290,399 - 49,300,855 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01850,083,461 - 50,093,920 (+)NCBIUU_Cfam_GSD_1.0
C2H11orf24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.124,682,204 - 4,692,016 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.223,247,155 - 3,256,954 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH11orf24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.116,261,118 - 6,272,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038103,545,921 - 103,558,214 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH11orf24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,605,295 - 18,611,087 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476718,601,635 - 18,610,913 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040283998   ⟹   XP_040139932
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049475,426,677 - 5,436,662 (+)NCBI
RefSeq Acc Id: XM_040283999   ⟹   XP_040139933
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049475,426,677 - 5,436,662 (+)NCBI
RefSeq Acc Id: XM_040284000   ⟹   XP_040139934
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049475,426,677 - 5,436,662 (+)NCBI
RefSeq Acc Id: XM_040284001   ⟹   XP_040139935
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049475,426,677 - 5,436,662 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040139932 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139933 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139934 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139935 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022257.2
  ENSSTOP00000031549.1
GenBank Protein KAG3284515 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040139932   ⟸   XM_040283998
- Peptide Label: isoform X1
- UniProtKB: I3ND10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139933   ⟸   XM_040283999
- Peptide Label: isoform X2
- UniProtKB: I3ND10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139934   ⟸   XM_040284000
- Peptide Label: isoform X3
- UniProtKB: I3ND10 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040139935   ⟸   XM_040284001
- Peptide Label: isoform X4
- UniProtKB: I3ND10 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012277 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029714.2 UniProtKB/TrEMBL
  ENSSTOT00000034230.1 UniProtKB/TrEMBL
InterPro DUF5585 UniProtKB/TrEMBL
NCBI Gene LOC101972406 ENTREZGENE
Pfam DUF5585 UniProtKB/TrEMBL
UniProt I3ND10 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 CUNH11orf24  chromosome unknown C11orf24 homolog  LOC101972406  chromosome unknown open reading frame, human C11orf24  Symbol and/or name change 5135510 APPROVED