Vgll4 (vestigial like family member 4) - Rat Genome Database

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Gene: Vgll4 (vestigial like family member 4) Mus musculus
Analyze
Symbol: Vgll4
Name: vestigial like family member 4
RGD ID: 1323224
MGI Page MGI
Description: Predicted to enable transcription coactivator binding activity. Involved in several processes, including negative regulation of cardiac muscle cell proliferation; negative regulation of hippo signaling; and positive regulation of protein catabolic process. Located in nucleus. Is expressed in lung; submandibular gland primordium; tooth; and vibrissa. Orthologous to human VGLL4 (vestigial like family member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC048841; MGC54805; transcription cofactor vestigial-like protein 4; vestigial like 4; vestigial like 4 (Drosophila); VGL; VGL-4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396114,836,850 - 114,946,932 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6114,837,589 - 114,946,955 (-)EnsemblGRCm39 Ensembl
GRCm386114,860,621 - 114,970,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6114,860,628 - 114,969,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv376114,812,108 - 114,871,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366114,827,709 - 114,887,371 (-)NCBIMGSCv36mm8
Celera6116,699,571 - 116,759,386 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.07NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amphetamine  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chloroprene  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP,ISO)
fenpyroximate  (ISO)
fenthion  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (ISO)
indometacin  (ISO)
inulin  (EXP)
ketoconazole  (ISO)
menadione  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
ozone  (EXP)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
tert-butyl hydroperoxide  (ISO)
trichloroethene  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15140898   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:22421440   PMID:24525233   PMID:27720608   PMID:30119884   PMID:30209132   PMID:30789911   PMID:31328806   PMID:32325033  
PMID:33097532   PMID:33984529   PMID:34314061   PMID:34984591   PMID:36139407   PMID:37352117   PMID:37921465   PMID:38355793  


Genomics

Comparative Map Data
Vgll4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396114,836,850 - 114,946,932 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6114,837,589 - 114,946,955 (-)EnsemblGRCm39 Ensembl
GRCm386114,860,621 - 114,970,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6114,860,628 - 114,969,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv376114,812,108 - 114,871,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366114,827,709 - 114,887,371 (-)NCBIMGSCv36mm8
Celera6116,699,571 - 116,759,386 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.07NCBI
VGLL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38311,556,067 - 11,721,815 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl311,556,069 - 11,771,350 (-)EnsemblGRCh38hg38GRCh38
GRCh37311,597,541 - 11,762,013 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36311,572,544 - 11,737,037 (-)NCBINCBI36Build 36hg18NCBI36
Build 34311,572,543 - 11,737,037NCBI
Celera311,532,949 - 11,697,489 (-)NCBICelera
Cytogenetic Map3p25.3-p25.2NCBI
HuRef311,531,091 - 11,695,667 (-)NCBIHuRef
CHM1_1311,547,671 - 11,712,219 (-)NCBICHM1_1
T2T-CHM13v2.0311,551,371 - 11,717,542 (-)NCBIT2T-CHM13v2.0
Vgll4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84149,598,151 - 149,711,186 (-)NCBIGRCr8
mRatBN7.24147,925,630 - 148,038,519 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4147,927,034 - 148,038,471 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4154,151,173 - 154,264,033 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04149,934,223 - 150,047,087 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04148,558,058 - 148,670,911 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04146,778,556 - 146,890,063 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4146,779,276 - 146,839,397 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04210,069,578 - 210,129,654 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44150,995,533 - 151,055,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14151,240,377 - 151,300,577 (-)NCBI
Celera4136,824,155 - 136,883,668 (-)NCBICelera
Cytogenetic Map4q42NCBI
Vgll4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542914,303,682 - 14,400,743 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542914,301,509 - 14,413,163 (-)NCBIChiLan1.0ChiLan1.0
VGLL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2211,549,922 - 11,715,904 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1311,554,683 - 11,719,713 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0311,489,805 - 11,654,507 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1311,834,746 - 11,999,783 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl311,834,746 - 11,981,877 (-)Ensemblpanpan1.1panPan2
VGLL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1206,751,951 - 6,915,650 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl206,751,801 - 6,913,201 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha206,788,411 - 6,951,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0206,781,024 - 6,944,924 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl206,780,872 - 6,973,869 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1206,498,117 - 6,661,200 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0206,854,645 - 7,017,774 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0206,825,251 - 6,988,564 (+)NCBIUU_Cfam_GSD_1.0
Vgll4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494216,971,272 - 17,120,226 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366021,815,313 - 1,936,031 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366021,789,479 - 1,938,440 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VGLL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1367,698,083 - 67,872,486 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11367,698,082 - 67,873,119 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21374,916,759 - 74,947,883 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VGLL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12247,572,345 - 47,734,089 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2247,574,828 - 47,658,057 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041118,782,175 - 118,944,113 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vgll4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624943113,215 - 232,216 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vgll4
3157 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:967
Count of miRNA genes:511
Interacting mature miRNAs:608
Transcripts:ENSMUST00000032459, ENSMUST00000123478, ENSMUST00000139640, ENSMUST00000147639, ENSMUST00000152710, ENSMUST00000155620
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined105982366120894102Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
8552704Cia43_mcollagen induced arthritis QTL 43 (mouse)Not determined6114159241119737532Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006506012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC149276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032459   ⟹   ENSMUSP00000032459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6114,838,385 - 114,898,782 (-)Ensembl
GRCm38.p6 Ensembl6114,861,424 - 114,921,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000123478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6114,839,152 - 114,841,718 (-)Ensembl
GRCm38.p6 Ensembl6114,862,191 - 114,864,757 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139640   ⟹   ENSMUSP00000118618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6114,839,725 - 114,946,955 (-)Ensembl
GRCm38.p6 Ensembl6114,862,764 - 114,969,994 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147639   ⟹   ENSMUSP00000123139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6114,839,282 - 114,946,141 (-)Ensembl
GRCm38.p6 Ensembl6114,862,321 - 114,969,180 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6114,837,589 - 114,852,068 (-)Ensembl
GRCm38.p6 Ensembl6114,860,628 - 114,875,107 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6114,839,152 - 114,851,981 (-)Ensembl
GRCm38.p6 Ensembl6114,862,191 - 114,875,020 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204693
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6114,897,015 - 114,898,777 (-)Ensembl
GRCm38.p6 Ensembl6114,920,054 - 114,921,816 (-)Ensembl
RefSeq Acc Id: NM_001356371   ⟹   NP_001343300
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,850 - 114,945,977 (-)NCBI
GRCm386114,860,628 - 114,969,203 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001411599   ⟹   NP_001398528
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,850 - 114,946,932 (-)NCBI
RefSeq Acc Id: NM_001411600   ⟹   NP_001398529
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,850 - 114,841,703 (-)NCBI
RefSeq Acc Id: NM_001411601   ⟹   NP_001398530
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,850 - 114,852,070 (-)NCBI
RefSeq Acc Id: NM_001411602   ⟹   NP_001398531
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,850 - 114,852,070 (-)NCBI
RefSeq Acc Id: NM_177683   ⟹   NP_808351
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,850 - 114,898,782 (-)NCBI
GRCm386114,860,628 - 114,921,821 (-)NCBI
MGSCv376114,812,108 - 114,871,770 (-)RGD
Celera6116,699,571 - 116,759,386 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006506012   ⟹   XP_006506075
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,955 - 114,878,005 (-)NCBI
GRCm386114,861,424 - 114,901,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166060   ⟹   XP_036021953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396114,836,955 - 114,897,847 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_808351   ⟸   NM_177683
- Peptide Label: isoform 1
- UniProtKB: Q80V24 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506075   ⟸   XM_006506012
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001343300   ⟸   NM_001356371
- Peptide Label: isoform 2
- UniProtKB: Q3TQI9 (UniProtKB/TrEMBL),   D3Z130 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000118618   ⟸   ENSMUST00000139640
RefSeq Acc Id: ENSMUSP00000032459   ⟸   ENSMUST00000032459
RefSeq Acc Id: ENSMUSP00000123139   ⟸   ENSMUST00000147639
RefSeq Acc Id: XP_036021953   ⟸   XM_036166060
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001398528   ⟸   NM_001411599
- Peptide Label: isoform 2
- UniProtKB: Q3TQI9 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398530   ⟸   NM_001411601
- Peptide Label: isoform 4
- UniProtKB: Q3TSJ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398531   ⟸   NM_001411602
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001398529   ⟸   NM_001411600
- Peptide Label: isoform 3 precursor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80V24-F1-model_v2 AlphaFold Q80V24 1-287 view protein structure

Promoters
RGD ID:6848044
Promoter ID:MM_ACW:42391
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour
Transcripts:VGLL4.GSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366114,811,911 - 114,812,411 (-)MPROMDB
RGD ID:6840146
Promoter ID:MM_KWN:47228
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   Kidney,   Liver,   Lung
Transcripts:OTTMUST00000057630
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366114,814,336 - 114,815,762 (-)MPROMDB
RGD ID:6840145
Promoter ID:MM_KWN:47229
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000057626,   OTTMUST00000057629
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366114,824,881 - 114,825,537 (-)MPROMDB
RGD ID:6838885
Promoter ID:MM_KWN:47232
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000057625,   UC009DII.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366114,870,491 - 114,871,897 (-)MPROMDB
RGD ID:6890698
Promoter ID:EPDNEW_M8800
Type:initiation region
Name:Vgll4_2
Description:Mus musculus vestigial like family member 4 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8801  EPDNEW_M8802  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386114,875,109 - 114,875,169EPDNEW
RGD ID:6890700
Promoter ID:EPDNEW_M8801
Type:initiation region
Name:Vgll4_1
Description:Mus musculus vestigial like family member 4 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8800  EPDNEW_M8802  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386114,921,811 - 114,921,871EPDNEW
RGD ID:6890702
Promoter ID:EPDNEW_M8802
Type:single initiation site
Name:Vgll4_3
Description:Mus musculus vestigial like family member 4 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8800  EPDNEW_M8801  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386114,969,016 - 114,969,076EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2652840 AgrOrtholog
Ensembl Genes ENSMUSG00000030315 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032459 ENTREZGENE
  ENSMUST00000032459.14 UniProtKB/Swiss-Prot
  ENSMUST00000139640.2 UniProtKB/TrEMBL
  ENSMUST00000147639 ENTREZGENE
  ENSMUST00000147639.8 UniProtKB/TrEMBL
InterPro TDU_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VGLL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232334 UniProtKB/Swiss-Prot
MGD MGI:2652840 ENTREZGENE
NCBI Gene 232334 ENTREZGENE
PANTHER PTHR17604 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam VGLL4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vgll4 PhenoGen
SMART TDU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YZY3_MOUSE UniProtKB/TrEMBL
  D3Z130 ENTREZGENE, UniProtKB/TrEMBL
  Q3TQI9 ENTREZGENE, UniProtKB/TrEMBL
  Q3TSJ2 ENTREZGENE, UniProtKB/TrEMBL
  Q80V24 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 Vgll4  vestigial like family member 4    vestigial like 4 (Drosophila)  Symbol and/or name change 5135510 APPROVED