Tdrkh (tudor and KH domain containing protein) - Rat Genome Database

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Gene: Tdrkh (tudor and KH domain containing protein) Mus musculus
Analyze
Symbol: Tdrkh
Name: tudor and KH domain containing protein
RGD ID: 1322528
MGI Page MGI
Description: Predicted to enable RNA binding activity. Involved in fertilization; male gamete generation; and piRNA processing. Located in mitochondrion; pi-body; and piP-body. Is expressed in central nervous system; reproductive system; sensory organ; and urinary system. Orthologous to human TDRKH (tudor and KH domain containing).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2700091C21Rik; Tdrd; Tdrd2; tudor and KH domain-containing protein; tudor domain-containing protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18817  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,320,551 - 94,342,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,320,580 - 94,341,975 (+)EnsemblGRCm39 Ensembl
GRCm38394,413,243 - 94,434,854 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,413,273 - 94,434,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,217,240 - 94,235,421 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36394,498,722 - 94,518,054 (+)NCBIMGSCv36mm8
Celera395,858,144 - 95,876,325 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IDA)
cytosol  (TAS)
mitochondrion  (HDA,IDA)
P granule  (IBA)
pi-body  (IDA)
piP-body  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:15955813   PMID:16033648   PMID:16141072   PMID:16141073   PMID:18287559  
PMID:18614015   PMID:19918066   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23714778   PMID:24194600   PMID:27626380   PMID:29018194   PMID:29118143   PMID:30590800   PMID:32554809  
PMID:34626567  


Genomics

Comparative Map Data
Tdrkh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39394,320,551 - 94,342,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl394,320,580 - 94,341,975 (+)EnsemblGRCm39 Ensembl
GRCm38394,413,243 - 94,434,854 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl394,413,273 - 94,434,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv37394,217,240 - 94,235,421 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36394,498,722 - 94,518,054 (+)NCBIMGSCv36mm8
Celera395,858,144 - 95,876,325 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map340.62NCBI
TDRKH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381151,766,486 - 151,790,534 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1151,770,107 - 151,791,416 (-)EnsemblGRCh38hg38GRCh38
GRCh371151,744,044 - 151,763,010 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361150,010,664 - 150,029,634 (-)NCBINCBI36Build 36hg18NCBI36
Build 341148,557,115 - 148,576,071NCBI
Celera1124,858,715 - 124,877,693 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1123,120,939 - 123,139,873 (-)NCBIHuRef
CHM1_11153,139,168 - 153,158,334 (-)NCBICHM1_1
T2T-CHM13v2.01150,889,872 - 150,914,019 (-)NCBIT2T-CHM13v2.0
Tdrkh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82184,736,255 - 184,760,534 (+)NCBIGRCr8
mRatBN7.22182,049,175 - 182,071,516 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2182,049,215 - 182,070,755 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2189,712,414 - 189,733,897 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02187,516,655 - 187,538,169 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02182,344,882 - 182,366,365 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02195,649,813 - 195,674,217 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2195,651,930 - 195,674,616 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02215,130,507 - 215,152,911 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42189,384,598 - 189,406,184 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12189,334,719 - 189,351,762 (+)NCBI
Celera2174,599,591 - 174,620,986 (+)NCBICelera
Cytogenetic Map2q34NCBI
Tdrkh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955589631,462 - 649,936 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955589630,989 - 649,936 (+)NCBIChiLan1.0ChiLan1.0
TDRKH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2198,032,230 - 98,051,946 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1197,783,329 - 97,803,137 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01127,128,857 - 127,149,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11130,772,891 - 130,792,942 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,774,515 - 130,792,942 (-)Ensemblpanpan1.1panPan2
TDRKH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11760,794,937 - 60,807,852 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1760,795,813 - 60,805,449 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1760,236,314 - 60,248,221 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01761,811,520 - 61,823,418 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1761,811,508 - 61,825,743 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11760,638,277 - 60,650,172 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01760,724,607 - 60,736,336 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01761,453,522 - 61,465,433 (-)NCBIUU_Cfam_GSD_1.0
Tdrkh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505822,937,417 - 22,951,740 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365801,967,639 - 1,982,134 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365801,968,001 - 1,982,073 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRKH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl497,415,914 - 97,438,691 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1497,415,891 - 97,438,262 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24106,438,836 - 106,461,263 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRKH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12011,895,882 - 11,916,981 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2011,896,380 - 11,916,031 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603811,455,327 - 11,489,647 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrkh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477219,444,049 - 19,463,788 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477219,447,092 - 19,463,796 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tdrkh
423 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:973
Count of miRNA genes:456
Interacting mature miRNAs:539
Transcripts:ENSMUST00000045245, ENSMUST00000166032
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse

Markers in Region
Tdrkh  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F2UniSTS
cM Map3 UniSTS
RH137835  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38394,425,895 - 94,426,019UniSTSGRCm38
MGSCv37394,229,817 - 94,229,941UniSTSGRCm37
Celera395,870,721 - 95,870,845UniSTS
Cytogenetic Map3F2UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000045245   ⟹   ENSMUSP00000041002
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,320,625 - 94,338,798 (+)Ensembl
GRCm38.p6 Ensembl394,413,318 - 94,431,491 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166032   ⟹   ENSMUSP00000129635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,320,580 - 94,341,975 (+)Ensembl
GRCm38.p6 Ensembl394,413,273 - 94,434,668 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196386   ⟹   ENSMUSP00000143256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,320,625 - 94,333,615 (+)Ensembl
GRCm38.p6 Ensembl394,413,318 - 94,426,308 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196606   ⟹   ENSMUSP00000143102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,330,107 - 94,338,803 (+)Ensembl
GRCm38.p6 Ensembl394,422,800 - 94,431,496 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197495   ⟹   ENSMUSP00000143135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,330,107 - 94,338,816 (+)Ensembl
GRCm38.p6 Ensembl394,422,800 - 94,431,509 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197876   ⟹   ENSMUSP00000142779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,320,607 - 94,332,942 (+)Ensembl
GRCm38.p6 Ensembl394,413,300 - 94,425,635 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197901   ⟹   ENSMUSP00000142561
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,320,625 - 94,338,814 (+)Ensembl
GRCm38.p6 Ensembl394,413,318 - 94,431,507 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200486   ⟹   ENSMUSP00000142584
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl394,320,624 - 94,333,695 (+)Ensembl
GRCm38.p6 Ensembl394,413,317 - 94,426,388 (+)Ensembl
RefSeq Acc Id: NM_001357711   ⟹   NP_001344640
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,320,551 - 94,339,957 (+)NCBI
GRCm38394,413,244 - 94,432,650 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357712   ⟹   NP_001344641
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,320,551 - 94,339,957 (+)NCBI
GRCm38394,413,244 - 94,432,650 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357713   ⟹   NP_001344642
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,320,551 - 94,333,697 (+)NCBI
GRCm38394,413,244 - 94,426,390 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001357714   ⟹   NP_001344643
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,320,551 - 94,333,697 (+)NCBI
GRCm38394,413,244 - 94,426,390 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028307   ⟹   NP_082583
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,320,551 - 94,339,957 (+)NCBI
GRCm38394,413,244 - 94,432,650 (+)NCBI
MGSCv37394,217,240 - 94,235,421 (+)RGD
Celera395,858,144 - 95,876,325 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030252843   ⟹   XP_030108703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,320,552 - 94,342,161 (+)NCBI
GRCm38394,413,244 - 94,434,854 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954404
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39394,320,556 - 94,342,161 (+)NCBI
GRCm38394,413,247 - 94,432,975 (+)NCBI
Sequence:
RefSeq Acc Id: NP_082583   ⟸   NM_028307
- Peptide Label: isoform 1
- UniProtKB: Q80VL1 (UniProtKB/Swiss-Prot),   Q6PGG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108703   ⟸   XM_030252843
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001344641   ⟸   NM_001357712
- Peptide Label: isoform 1
- UniProtKB: Q80VL1 (UniProtKB/Swiss-Prot),   Q6PGG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344640   ⟸   NM_001357711
- Peptide Label: isoform 1
- UniProtKB: Q80VL1 (UniProtKB/Swiss-Prot),   Q6PGG8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344642   ⟸   NM_001357713
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JE08 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344643   ⟸   NM_001357714
- Peptide Label: isoform 3
- UniProtKB: A0A0G2JFP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000143135   ⟸   ENSMUST00000197495
RefSeq Acc Id: ENSMUSP00000142561   ⟸   ENSMUST00000197901
RefSeq Acc Id: ENSMUSP00000142779   ⟸   ENSMUST00000197876
RefSeq Acc Id: ENSMUSP00000041002   ⟸   ENSMUST00000045245
RefSeq Acc Id: ENSMUSP00000129635   ⟸   ENSMUST00000166032
RefSeq Acc Id: ENSMUSP00000143256   ⟸   ENSMUST00000196386
RefSeq Acc Id: ENSMUSP00000143102   ⟸   ENSMUST00000196606
RefSeq Acc Id: ENSMUSP00000142584   ⟸   ENSMUST00000200486
Protein Domains
K Homology   KH   Tudor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80VL1-F1-model_v2 AlphaFold Q80VL1 1-560 view protein structure

Promoters
RGD ID:6833377
Promoter ID:MM_KWN:35201
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:AK006651_1700040D17RIK,   NM_028307,   UC008QGC.1,   UC008QGD.1,   UC008QGE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36394,216,839 - 94,217,339 (-)MPROMDB
RGD ID:6881494
Promoter ID:EPDNEW_M4198
Type:initiation region
Name:Tdrkh_1
Description:Mus musculus tudor and KH domain containing protein , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38394,413,289 - 94,413,349EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919884 AgrOrtholog
Ensembl Genes ENSMUSG00000041912 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045245 ENTREZGENE
  ENSMUST00000045245.10 UniProtKB/Swiss-Prot
  ENSMUST00000166032 ENTREZGENE
  ENSMUST00000166032.8 UniProtKB/Swiss-Prot
  ENSMUST00000196386 ENTREZGENE
  ENSMUST00000196386.5 UniProtKB/TrEMBL
  ENSMUST00000196606.5 UniProtKB/TrEMBL
  ENSMUST00000197495.2 UniProtKB/TrEMBL
  ENSMUST00000197876.5 UniProtKB/TrEMBL
  ENSMUST00000197901 ENTREZGENE
  ENSMUST00000197901.5 UniProtKB/Swiss-Prot
  ENSMUST00000200486 ENTREZGENE
  ENSMUST00000200486.5 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KH-I_TDRKH_rpt1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH-I_TDRKH_rpt2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNase_OB-fold_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TDRD2-like_tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72634 UniProtKB/Swiss-Prot
MGD MGI:1919884 ENTREZGENE
NCBI Gene 72634 ENTREZGENE
PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/TrEMBL
  P-ELEMENT SOMATIC INHIBITOR, ISOFORM C UniProtKB/TrEMBL
  TUDOR AND KH DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tdrkh PhenoGen
PROSITE KH_TYPE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JE08 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JEH9_MOUSE UniProtKB/TrEMBL
  A0A0G2JFB2_MOUSE UniProtKB/TrEMBL
  A0A0G2JFE0_MOUSE UniProtKB/TrEMBL
  A0A0G2JFP5 ENTREZGENE, UniProtKB/TrEMBL
  Q6PGG8 ENTREZGENE, UniProtKB/TrEMBL
  Q80VL1 ENTREZGENE, UniProtKB/Swiss-Prot